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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Nov 13;64(Pt 12):o2336. doi: 10.1107/S1600536808036301

3,4,5-Trimethoxy­benzohydrazidium chloride

Aamer Saeed a,*, Amara Mumtaz a, Hummera Rafique a, Kazuma Gotoh b, Hiroyuki Ishida b
PMCID: PMC2959913  PMID: 21581311

Abstract

The title compound, C10H15N2O4 +·Cl, was obtained as an unexpected by-product during the synthesis of 1-[2-(substituted ar­yl)]-3-methyl­pyrazol-5-ones. The hydrazide group is essentially planar, with an r.s.m. deviation of 0.020 (2) Å, and is oriented at a dihedral angle of 30.52 (3)° with respect to the benzene ring. In the crystal structure, the cations and anions are linked through N—H⋯O and N—H⋯Cl hydrogen bonds, forming a mol­ecular tape running along the b axis.

Related literature

For general background, see: Jin et al. (2006); Song et al. (2005); Yang et al. (2007). For a related structure, see: Zareef et al. (2006). For bond-length data, see: Allen et al. (1987).graphic file with name e-64-o2336-scheme1.jpg

Experimental

Crystal data

  • C10H15N2O4 +·Cl

  • M r = 262.69

  • Monoclinic, Inline graphic

  • a = 38.587 (3) Å

  • b = 4.8202 (3) Å

  • c = 13.5915 (10) Å

  • β = 108.459 (2)°

  • V = 2397.9 (3) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.32 mm−1

  • T = 223 (1) K

  • 0.29 × 0.28 × 0.05 mm

Data collection

  • Rigaku R-AXIS RAPIDII diffractometer

  • Absorption correction: numerical (ABSCOR; Higashi, 1999) T min = 0.930, T max = 0.984

  • 15536 measured reflections

  • 3483 independent reflections

  • 2987 reflections with I > 2σ(I)

  • R int = 0.035

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.111

  • S = 1.06

  • 3483 reflections

  • 158 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.51 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: PROCESS-AUTO (Rigaku/MSC, 2004); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: CrystalStructure and PLATON (Spek, 2003).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808036301/hk2567sup1.cif

e-64-o2336-sup1.cif (17.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808036301/hk2567Isup2.hkl

e-64-o2336-Isup2.hkl (170.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O4i 0.876 (19) 2.007 (19) 2.8200 (13) 154.0 (18)
N2—H2NA⋯Cl1ii 0.90 2.25 3.1169 (11) 162
N2—H2NB⋯Cl1 0.90 2.20 3.0937 (11) 171
N2—H2NC⋯Cl1iii 0.90 2.30 3.1724 (12) 164

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

supplementary crystallographic information

Comment

3,4,5-Trimethoxybenzohydrazide is an intermediate toward variety of hetero- cyclic systems. Thioether derivatives bearing 1,3,4-thiadiazole and 3,4,5-tri- methoxyphenyl moieties and N-substituted benzylidene-3,4,5-trimethoxybenzo- hydrazide and 3-acetyl-2-substituted phenyl-5-(3,4,5-trimethoxyphenyl)-2,3 -dihydro-1,3,4-oxadiazole derivatives were proved to have good anti-cancer and anti-tumor bioactivities (Song et al., 2005; Jin et al., 2006). 4-Alkyl(aryl)- thioquinazoline derivatives synthesized from gallic acid were highly effective against cancer cell lines (Yang et al., 2007). The title compound was obtained as an unexpected by-product during synthesis of 1-[2-(substituted aryl)]-3 -methylpyrazol-5-ones, and we report herein its crystal structure.

In the title compound (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges, and may be compared with the corresponding ones in 3,4,5-trimethoxybenzohydrazide hemihydrate (Zareef et al., 2006). The (N1/N2/O4/C7) plane is oriented with respect to ring A (C1-C6) at a dihedral angle of 30.52 (3)°, which is larger than the corresponding one [9.27 (10)°] in 3,4,5-trimethoxybenzohydrazide hemihydrate.

In the crystal structure, the molecules are linked through N-H···O and N-H···Cl hydrogen bonds, forming a molecular tape running along the b axis (Fig. 2). No significant interaction is observed between the tapes (Fig. 3).

Experimental

A mixture of 3,4,5-trimethoxybenzohydrazide (0.01 mol) and ethyl acetoacetate (0.01 mol) was refluxed in methanol (25 ml), containing concentrated hydrochloric acid (1 ml) for 8 h in a water-bath. The resulting solution was then concentrated and cooled at room temperature. The solid thus separated was washed with methanol, dried and recrystallized with acetone. Anal. calcd. for C10H15ClN2O4: C 45.72, H 5.76, N 10.66%; found: C 45.57, H 5.64, N 10.69%.

Refinement

H1 atom (for NH) was located in difference synthesis and refined isotropically [N-H = 0.876 (19) Å and Uiso(H) = 0.039 (5) Å2]. The remaining H atoms were positioned geometrically, with N-H = 0.90 Å (for NH3) and C-H = 0.94 and 0.97 Å for aromatic and metyl H, respectively, and constrained to ride on their parent atoms with Uiso(H) = xUeq(C,N), where x = 1.2 for aromatic H and x = 1.5 for all other H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A partial packing diagram, showing the molecular tape running along the b axis. Hydrogen bonds are shown as dashed lines.

Fig. 3.

Fig. 3.

A crystal packing diagram, viewed along the b axis.

Crystal data

C10H15N2O4+·Cl F000 = 1104.00
Mr = 262.69 Dx = 1.455 Mg m3
Monoclinic, C2/c Mo Kα radiation λ = 0.71075 Å
Hall symbol: -C 2yc Cell parameters from 12804 reflections
a = 38.587 (3) Å θ = 3.0–30.0º
b = 4.8202 (3) Å µ = 0.32 mm1
c = 13.5915 (10) Å T = 223 (1) K
β = 108.459 (2)º Platelet, colorless
V = 2397.9 (3) Å3 0.29 × 0.28 × 0.05 mm
Z = 8

Data collection

Rigaku R-AXIS RAPIDII diffractometer 3483 independent reflections
Detector resolution: 10.00 pixels mm-1 2987 reflections with I > 2σ(I)
T = 223(2) K Rint = 0.035
ω scans θmax = 30.0º
Absorption correction: numerical(ABSCOR; Higashi, 1999) h = −54→50
Tmin = 0.930, Tmax = 0.984 k = −6→6
15536 measured reflections l = −19→19

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111   w = 1/[σ2(Fo2) + (0.0672P)2 + 0.9082P] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max = 0.003
3483 reflections Δρmax = 0.51 e Å3
158 parameters Δρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.531194 (8) 0.74543 (6) 0.14789 (2) 0.02591 (11)
O1 0.29508 (2) −0.1702 (2) 0.04400 (7) 0.0261 (2)
O2 0.29359 (2) 0.12014 (18) 0.20875 (7) 0.02407 (19)
O3 0.35072 (3) 0.4308 (2) 0.31676 (7) 0.0301 (2)
O4 0.43237 (2) −0.16714 (18) 0.07270 (7) 0.02515 (19)
N1 0.44683 (3) 0.2704 (2) 0.12743 (9) 0.0220 (2)
N2 0.47777 (3) 0.24854 (19) 0.09232 (9) 0.0222 (2)
H2NA 0.4900 0.0916 0.1173 0.033*
H2NB 0.4925 0.3956 0.1150 0.033*
H2NC 0.4703 0.2446 0.0225 0.033*
C1 0.38998 (3) 0.0818 (2) 0.13600 (9) 0.0198 (2)
C2 0.35979 (3) −0.0716 (2) 0.07763 (9) 0.0207 (2)
H2 0.3616 −0.1909 0.0248 0.025*
C3 0.32687 (3) −0.0453 (2) 0.09891 (8) 0.0204 (2)
C4 0.32509 (3) 0.1212 (2) 0.18165 (9) 0.0209 (2)
C5 0.35556 (3) 0.2748 (2) 0.23870 (9) 0.0217 (2)
C6 0.38830 (3) 0.2592 (2) 0.21544 (9) 0.0212 (2)
H6 0.4087 0.3656 0.2524 0.025*
C7 0.42422 (3) 0.0465 (2) 0.10930 (8) 0.0189 (2)
C8 0.29543 (4) −0.3376 (3) −0.04212 (10) 0.0302 (3)
H8A 0.3035 −0.2270 −0.0904 0.045*
H8B 0.2710 −0.4073 −0.0767 0.045*
H8C 0.3120 −0.4923 −0.0179 0.045*
C9 0.27160 (4) 0.3649 (3) 0.17816 (11) 0.0297 (3)
H9A 0.2862 0.5274 0.2066 0.045*
H9B 0.2509 0.3552 0.2041 0.045*
H9C 0.2628 0.3775 0.1031 0.045*
C10 0.38005 (4) 0.6091 (3) 0.37142 (10) 0.0311 (3)
H10A 0.4011 0.4981 0.4084 0.047*
H10B 0.3726 0.7210 0.4205 0.047*
H10C 0.3864 0.7294 0.3225 0.047*
H1 0.4380 (5) 0.439 (4) 0.1231 (14) 0.039 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.02223 (16) 0.02581 (17) 0.02881 (17) −0.00046 (9) 0.00682 (12) −0.00128 (10)
O1 0.0225 (4) 0.0335 (5) 0.0239 (4) −0.0077 (3) 0.0095 (3) −0.0079 (4)
O2 0.0240 (4) 0.0253 (4) 0.0279 (4) −0.0016 (3) 0.0153 (3) 0.0007 (3)
O3 0.0292 (4) 0.0377 (5) 0.0280 (4) −0.0087 (4) 0.0158 (4) −0.0148 (4)
O4 0.0266 (4) 0.0200 (4) 0.0313 (5) −0.0006 (3) 0.0127 (4) −0.0037 (3)
N1 0.0220 (5) 0.0169 (5) 0.0317 (5) −0.0004 (3) 0.0149 (4) −0.0014 (4)
N2 0.0214 (5) 0.0202 (5) 0.0280 (5) −0.0019 (3) 0.0122 (4) −0.0009 (4)
C1 0.0209 (5) 0.0190 (5) 0.0213 (5) 0.0004 (4) 0.0092 (4) 0.0015 (4)
C2 0.0234 (5) 0.0199 (5) 0.0208 (5) −0.0012 (4) 0.0099 (4) −0.0010 (4)
C3 0.0218 (5) 0.0207 (5) 0.0195 (5) −0.0028 (4) 0.0074 (4) 0.0005 (4)
C4 0.0216 (5) 0.0228 (5) 0.0213 (5) −0.0010 (4) 0.0109 (4) 0.0008 (4)
C5 0.0246 (6) 0.0229 (5) 0.0199 (5) −0.0010 (4) 0.0103 (4) −0.0022 (4)
C6 0.0216 (5) 0.0215 (5) 0.0217 (5) −0.0025 (4) 0.0086 (4) −0.0020 (4)
C7 0.0202 (5) 0.0180 (5) 0.0186 (5) 0.0010 (4) 0.0062 (4) 0.0019 (4)
C8 0.0284 (6) 0.0371 (7) 0.0255 (6) −0.0072 (5) 0.0092 (5) −0.0091 (5)
C9 0.0275 (6) 0.0294 (6) 0.0358 (7) 0.0029 (5) 0.0152 (5) 0.0030 (5)
C10 0.0328 (6) 0.0344 (7) 0.0274 (6) −0.0074 (5) 0.0112 (5) −0.0118 (5)

Geometric parameters (Å, °)

O1—C3 1.3581 (14) C2—C3 1.3950 (15)
O1—C8 1.4251 (15) C2—H2 0.9400
O2—C4 1.3771 (13) C3—C4 1.4009 (15)
O2—C9 1.4356 (16) C4—C5 1.3982 (16)
O3—C5 1.3605 (14) C5—C6 1.3981 (16)
O3—C10 1.4280 (15) C6—H6 0.9400
O4—C7 1.2271 (14) C8—H8A 0.9700
N1—C7 1.3602 (14) C8—H8B 0.9700
N1—N2 1.4230 (13) C8—H8C 0.9700
N1—H1 0.876 (19) C9—H9A 0.9700
N2—H2NA 0.9000 C9—H9B 0.9700
N2—H2NB 0.9000 C9—H9C 0.9700
N2—H2NC 0.9000 C10—H10A 0.9700
C1—C6 1.3947 (15) C10—H10B 0.9700
C1—C2 1.3958 (15) C10—H10C 0.9700
C1—C7 1.4867 (15)
C3—O1—C8 117.43 (9) C4—C5—C6 120.52 (10)
C4—O2—C9 114.20 (9) C1—C6—C5 118.34 (10)
C5—O3—C10 117.16 (9) C1—C6—H6 120.8
C7—N1—N2 116.00 (9) C5—C6—H6 120.8
C7—N1—H1 120.7 (11) O4—C7—N1 120.50 (10)
N2—N1—H1 113.3 (11) O4—C7—C1 123.82 (10)
N1—N2—H2NA 109.5 N1—C7—C1 115.68 (10)
N1—N2—H2NB 109.5 O1—C8—H8A 109.5
H2NA—N2—H2NB 109.5 O1—C8—H8B 109.5
N1—N2—H2NC 109.5 H8A—C8—H8B 109.5
H2NA—N2—H2NC 109.5 O1—C8—H8C 109.5
H2NB—N2—H2NC 109.5 H8A—C8—H8C 109.5
C6—C1—C2 121.99 (10) H8B—C8—H8C 109.5
C6—C1—C7 121.46 (10) O2—C9—H9A 109.5
C2—C1—C7 116.55 (10) O2—C9—H9B 109.5
C3—C2—C1 119.01 (10) H9A—C9—H9B 109.5
C3—C2—H2 120.5 O2—C9—H9C 109.5
C1—C2—H2 120.5 H9A—C9—H9C 109.5
O1—C3—C2 124.68 (10) H9B—C9—H9C 109.5
O1—C3—C4 115.46 (10) O3—C10—H10A 109.5
C2—C3—C4 119.86 (10) O3—C10—H10B 109.5
O2—C4—C5 120.82 (10) H10A—C10—H10B 109.5
O2—C4—C3 118.97 (10) O3—C10—H10C 109.5
C5—C4—C3 120.13 (10) H10A—C10—H10C 109.5
O3—C5—C4 115.21 (10) H10B—C10—H10C 109.5
O3—C5—C6 124.26 (11)
C6—C1—C2—C3 0.46 (17) O2—C4—C5—O3 −3.67 (16)
C7—C1—C2—C3 −179.61 (10) C3—C4—C5—O3 179.53 (10)
C8—O1—C3—C2 −0.71 (17) O2—C4—C5—C6 175.34 (10)
C8—O1—C3—C4 178.87 (11) C3—C4—C5—C6 −1.46 (17)
C1—C2—C3—O1 175.98 (10) C2—C1—C6—C5 2.13 (17)
C1—C2—C3—C4 −3.58 (16) C7—C1—C6—C5 −177.79 (10)
C9—O2—C4—C5 77.58 (14) O3—C5—C6—C1 177.30 (11)
C9—O2—C4—C3 −105.59 (12) C4—C5—C6—C1 −1.62 (17)
O1—C3—C4—O2 7.64 (15) N2—N1—C7—O4 5.88 (16)
C2—C3—C4—O2 −172.76 (10) N2—N1—C7—C1 −173.78 (10)
O1—C3—C4—C5 −175.50 (10) C6—C1—C7—O4 150.77 (11)
C2—C3—C4—C5 4.09 (17) C2—C1—C7—O4 −29.15 (16)
C10—O3—C5—C4 −174.81 (11) C6—C1—C7—N1 −29.58 (15)
C10—O3—C5—C6 6.22 (18) C2—C1—C7—N1 150.50 (11)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1···O4i 0.876 (19) 2.007 (19) 2.8200 (13) 154.0 (18)
N2—H2NA···Cl1ii 0.90 2.25 3.1169 (11) 162
N2—H2NB···Cl1 0.90 2.20 3.0937 (11) 171
N2—H2NC···Cl1iii 0.90 2.30 3.1724 (12) 164

Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z; (iii) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2567).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  3. Higashi, T. (1999). ABSCOR Rigaku Corporation, Tokyo, Japan.
  4. Jin, L.-H., Chen, J., Song, B.-A., Chen, Z., Yang, S., Li, Q.-Z., Hu, D.-Y. & Xu, R.-Q. (2006). Bioorg. Med. Chem. Lett 16, 5036–5041. [DOI] [PubMed]
  5. Rigaku/MSC (2004). CrystalStructure and PROCESS-AUTO Rigaku/MSC, The Woodlands, Texas, USA.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Song, B.-A., Chen, C.-J., Yang, S., Jin, L.-H., Xue, W., Zhang, S.-M., Zou, Z.-H., Hu, D.-Y. & Liu, G. (2005). Huaxue Xuebao, 63, 1720–1725.
  8. Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
  9. Yang, S., Li, Z., Jin, L., Song, B., Liu, G., Chen, J., Chen, Z., Hu, D., Xue, W. & Xu, R. (2007). Bioorg. Med. Chem. Lett 17, 2193–2196. [DOI] [PubMed]
  10. Zareef, M., Iqbal, R., Qadeer, G., Arfan, M. & Lu, X.-M. (2006). Acta Cryst. E62, o3259–o3261.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808036301/hk2567sup1.cif

e-64-o2336-sup1.cif (17.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808036301/hk2567Isup2.hkl

e-64-o2336-Isup2.hkl (170.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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