Abstract
In the title compound, [Cd2(C12H6O4)2(C10H14N4)(H2O)]n, the coordination polyhedron around each CdII ion is a distorted CdNO5 octahedron. The water O atom has site symmetry 2 and the complete 1,1′-(butane-1,4-diyl)diimidazole (L) ligand is generated by inversion. The naphthalene-1,4-dicarboxylate and L ligands bridge the metal centres, forming a three-dimensional framework, which is consolidated by O—H⋯O hydrogen bonds.
Related literature
For background to metal–organic frameworks, see Ma et al. (2003 ▶); Yang et al. (2008 ▶).
Experimental
Crystal data
[Cd2(C12H6O4)2(C10H14N4)(H2O)]
M r = 861.40
Monoclinic,
a = 18.773 (2) Å
b = 14.9118 (19) Å
c = 14.2298 (18) Å
β = 127.3900 (10)°
V = 3165.0 (7) Å3
Z = 4
Mo Kα radiation
μ = 1.41 mm−1
T = 293 (2) K
0.33 × 0.27 × 0.22 mm
Data collection
Bruker APEX CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.691, T max = 0.732
8715 measured reflections
3102 independent reflections
2809 reflections with I > 2σ(I)
R int = 0.018
Refinement
R[F 2 > 2σ(F 2)] = 0.022
wR(F 2) = 0.056
S = 1.06
3102 reflections
226 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.47 e Å−3
Δρmin = −0.30 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037525/hb2837sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037525/hb2837Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected bond lengths (Å).
| Cd1—N1 | 2.264 (2) |
| Cd1—O2 | 2.2746 (17) |
| Cd1—O1i | 2.2344 (17) |
| Cd1—O4ii | 2.3096 (16) |
| Cd1—O4iii | 2.4847 (15) |
| Cd1—O1W | 2.2995 (14) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1W—HW11⋯O3iii | 0.76 (3) | 1.80 (3) | 2.549 (2) | 169 (3) |
Symmetry code: (iii)
.
Acknowledgments
The work was supported by the Program for Young Academic Backbone in Heilongjiang Provincial University (grant No. 1152G053)
supplementary crystallographic information
Comment
Currently, metal-organic frameworks are of great interest because of their interesting structures and potential applications. Up to now, some interesting interpenetrated or entangled metal-organic networks with bis(imidazole)-containing ligands have been documented (Yang et al., 2008). However, flexible ligands such as 1,1'-(butane-1,4-diyl)diimidazole (L) has not been well explored to date (Ma et al., 2003). In this work, we selected naphthalene-1,4-dicarboxylic acid (1,4-H2ndc) and L as linkers in combination with a source of cadmium ions, generating a new coordination polymer, [Cd2(1,4-ndc)2(L)(H2O)], (I), which is reported here.
In compound (I) each CdII atom is six-coordinated by one N atom from one L ligand, and five O atoms from four carboxylate oxygen atoms and one water molecule in a distorted octohedral coordination sphere (Fig. 1, Table 1). The water molecule O atom has site symmetry 2 and the L ligand is situated across an inversion centre. The two neighbouring CdII atoms are bridged by the carboxylate and water molecule to form a dimer. The dimers are further linked by the backbone of 1,4-ndc and L ligands to form a three-dimensional framework (Fig. 2). An O—H···O hydrogen bond (Table 2) helps to consolidate the packing.
Experimental
A mixture of 1,4-H2ndc (0.5 mmol), L (0.5 mmol), NaOH (1 mmol) and CdCl2.2.5H2O (0.5 mmol) was suspended in 14 ml of deionized water and sealed in a 20-ml Teflon-lined autoclave. Upon heating at 413 K for three days, the autoclave was slowly cooled to room temperature. The resulting colourless blocks of (I) were collected, washed with deionized water and dried.
Refinement
The C–bound H atoms were positioned geometrically (C—H = 0.93–0.96 Å) and refined as riding, with Uiso(H) = 1.2Ueq(carrier). The water H atom was located in a difference Fourier map and refined freely.
Figures
Fig. 1.
The asymmetric unit of (I), extended to show the Cd coordination sphere and the complete L ligand. Displacement ellipsoids are drawn at the 30% probability level and H atoms are omitted for clarity. Symmetry code: (i) 1-x, y, 0.5-z; (ii) x+0.5, y+0.5, z; (iii) 0.5-x, 0.5-y, -z; (iv) -x, y, -0.5-z.
Fig. 2.
View of the three-dimensional framework of (I).
Crystal data
| [Cd2(C12H6O4)2(C10H14N4)(H2O)] | F000 = 1712 |
| Mr = 861.40 | Dx = 1.808 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 3102 reflections |
| a = 18.773 (2) Å | θ = 1.1–26.0º |
| b = 14.9118 (19) Å | µ = 1.41 mm−1 |
| c = 14.2298 (18) Å | T = 293 (2) K |
| β = 127.3900 (10)º | Block, colorless |
| V = 3165.0 (7) Å3 | 0.33 × 0.27 × 0.22 mm |
| Z = 4 |
Data collection
| Bruker APEX CCD diffractometer | 3102 independent reflections |
| Radiation source: fine-focus sealed tube | 2809 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.018 |
| T = 293(2) K | θmax = 26.0º |
| ω scans | θmin = 1.9º |
| Absorption correction: multi-scan(SADABS; Bruker, 1998) | h = −16→23 |
| Tmin = 0.691, Tmax = 0.732 | k = −18→17 |
| 8715 measured reflections | l = −16→17 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.056 | w = 1/[σ2(Fo2) + (0.0287P)2 + 3.5082P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.07 | (Δ/σ)max = 0.001 |
| 3102 reflections | Δρmax = 0.47 e Å−3 |
| 226 parameters | Δρmin = −0.30 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.37567 (16) | 0.35138 (16) | 0.1979 (2) | 0.0297 (5) | |
| C2 | 0.30731 (16) | 0.28246 (16) | 0.1737 (2) | 0.0280 (5) | |
| C3 | 0.21801 (17) | 0.30336 (18) | 0.0966 (2) | 0.0359 (6) | |
| H3 | 0.2005 | 0.3550 | 0.0509 | 0.043* | |
| C4 | 0.15233 (17) | 0.24857 (19) | 0.0850 (2) | 0.0374 (6) | |
| H4 | 0.0922 | 0.2646 | 0.0328 | 0.045* | |
| C5 | 0.17624 (16) | 0.17188 (17) | 0.1500 (2) | 0.0305 (5) | |
| C6 | 0.10956 (17) | 0.12334 (17) | 0.1573 (2) | 0.0333 (6) | |
| C7 | 0.26737 (17) | 0.14297 (16) | 0.2231 (2) | 0.0300 (5) | |
| C8 | 0.33359 (16) | 0.19901 (16) | 0.2353 (2) | 0.0288 (5) | |
| C9 | 0.42311 (18) | 0.16783 (19) | 0.3048 (2) | 0.0422 (6) | |
| H9 | 0.4676 | 0.2031 | 0.3133 | 0.051* | |
| C10 | 0.4447 (2) | 0.0865 (2) | 0.3594 (3) | 0.0579 (9) | |
| H10 | 0.5038 | 0.0670 | 0.4048 | 0.069* | |
| C11 | 0.3796 (3) | 0.0319 (2) | 0.3485 (3) | 0.0549 (9) | |
| H11 | 0.3957 | −0.0234 | 0.3864 | 0.066* | |
| C12 | 0.2933 (2) | 0.05926 (19) | 0.2830 (3) | 0.0432 (7) | |
| H12 | 0.2505 | 0.0229 | 0.2771 | 0.052* | |
| C13 | 0.26154 (18) | 0.5557 (2) | −0.0295 (3) | 0.0433 (7) | |
| H13 | 0.2482 | 0.5072 | −0.0015 | 0.052* | |
| C14 | 0.32799 (18) | 0.64237 (19) | −0.0731 (2) | 0.0404 (6) | |
| H14 | 0.3701 | 0.6657 | −0.0810 | 0.048* | |
| C15 | 0.2503 (2) | 0.6826 (2) | −0.1106 (3) | 0.0471 (7) | |
| H15 | 0.2295 | 0.7378 | −0.1484 | 0.056* | |
| C16 | 0.1209 (2) | 0.6416 (3) | −0.1088 (3) | 0.0654 (10) | |
| H16A | 0.1215 | 0.6989 | −0.0761 | 0.078* | |
| H16B | 0.1111 | 0.5954 | −0.0697 | 0.078* | |
| C17 | 0.04549 (17) | 0.6405 (2) | −0.2362 (3) | 0.0479 (7) | |
| H17A | 0.0508 | 0.5876 | −0.2712 | 0.057* | |
| H17B | 0.0502 | 0.6926 | −0.2729 | 0.057* | |
| N1 | 0.33508 (13) | 0.56210 (15) | −0.02170 (18) | 0.0332 (5) | |
| N2 | 0.20866 (14) | 0.62697 (18) | −0.0825 (2) | 0.0440 (6) | |
| O1 | 0.43795 (13) | 0.36693 (13) | 0.30491 (17) | 0.0455 (5) | |
| O2 | 0.36314 (12) | 0.38808 (13) | 0.11038 (17) | 0.0438 (5) | |
| O1W | 0.5000 | 0.55213 (17) | 0.2500 | 0.0267 (5) | |
| O3 | 0.11724 (18) | 0.13705 (18) | 0.2487 (2) | 0.0756 (9) | |
| O4 | 0.05171 (10) | 0.07264 (11) | 0.07468 (14) | 0.0285 (4) | |
| Cd1 | 0.453957 (10) | 0.468475 (11) | 0.086231 (14) | 0.02277 (7) | |
| HW11 | 0.5363 (19) | 0.581 (2) | 0.257 (3) | 0.047 (9)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0285 (13) | 0.0274 (13) | 0.0399 (14) | −0.0057 (10) | 0.0242 (12) | −0.0041 (10) |
| C2 | 0.0297 (13) | 0.0301 (13) | 0.0297 (12) | −0.0090 (10) | 0.0210 (11) | −0.0043 (9) |
| C3 | 0.0322 (14) | 0.0360 (14) | 0.0372 (14) | −0.0070 (11) | 0.0199 (12) | 0.0061 (11) |
| C4 | 0.0224 (13) | 0.0495 (16) | 0.0335 (13) | −0.0073 (11) | 0.0135 (11) | 0.0031 (12) |
| C5 | 0.0330 (14) | 0.0352 (14) | 0.0277 (12) | −0.0151 (11) | 0.0207 (11) | −0.0086 (10) |
| C6 | 0.0349 (14) | 0.0362 (14) | 0.0367 (13) | −0.0151 (11) | 0.0258 (12) | −0.0083 (11) |
| C7 | 0.0383 (14) | 0.0263 (12) | 0.0321 (12) | −0.0085 (10) | 0.0248 (12) | −0.0065 (9) |
| C8 | 0.0326 (13) | 0.0286 (13) | 0.0275 (12) | −0.0062 (10) | 0.0194 (11) | −0.0049 (9) |
| C9 | 0.0309 (14) | 0.0451 (16) | 0.0473 (16) | −0.0033 (12) | 0.0220 (13) | −0.0020 (13) |
| C10 | 0.0466 (19) | 0.055 (2) | 0.059 (2) | 0.0159 (16) | 0.0252 (17) | 0.0103 (16) |
| C11 | 0.071 (2) | 0.0382 (17) | 0.057 (2) | 0.0114 (15) | 0.0393 (19) | 0.0134 (14) |
| C12 | 0.0588 (19) | 0.0316 (14) | 0.0473 (16) | −0.0070 (13) | 0.0363 (16) | −0.0002 (12) |
| C13 | 0.0273 (14) | 0.0576 (18) | 0.0448 (16) | 0.0071 (13) | 0.0219 (13) | 0.0155 (14) |
| C14 | 0.0337 (15) | 0.0472 (17) | 0.0424 (15) | 0.0055 (12) | 0.0242 (13) | 0.0125 (12) |
| C15 | 0.0421 (17) | 0.0460 (17) | 0.0500 (17) | 0.0172 (13) | 0.0264 (14) | 0.0216 (13) |
| C16 | 0.0298 (16) | 0.113 (3) | 0.0529 (19) | 0.0232 (18) | 0.0248 (15) | 0.010 (2) |
| C17 | 0.0267 (15) | 0.0587 (19) | 0.0532 (18) | −0.0054 (13) | 0.0216 (14) | −0.0030 (14) |
| N1 | 0.0226 (10) | 0.0413 (12) | 0.0333 (11) | 0.0050 (9) | 0.0157 (9) | 0.0085 (9) |
| N2 | 0.0240 (11) | 0.0664 (17) | 0.0381 (12) | 0.0166 (11) | 0.0169 (10) | 0.0157 (11) |
| O1 | 0.0446 (12) | 0.0513 (12) | 0.0427 (11) | −0.0287 (9) | 0.0276 (10) | −0.0154 (9) |
| O2 | 0.0366 (11) | 0.0469 (12) | 0.0466 (11) | −0.0093 (8) | 0.0245 (9) | 0.0115 (9) |
| O1W | 0.0269 (14) | 0.0260 (13) | 0.0350 (13) | 0.000 | 0.0227 (12) | 0.000 |
| O3 | 0.0944 (19) | 0.103 (2) | 0.0678 (15) | −0.0748 (16) | 0.0690 (15) | −0.0539 (14) |
| O4 | 0.0261 (9) | 0.0332 (9) | 0.0295 (8) | −0.0109 (7) | 0.0185 (7) | −0.0068 (7) |
| Cd1 | 0.01994 (10) | 0.02484 (11) | 0.02462 (10) | 0.00131 (6) | 0.01409 (8) | 0.00274 (6) |
Geometric parameters (Å, °)
| C1—O2 | 1.245 (3) | C13—H13 | 0.9300 |
| C1—O1 | 1.256 (3) | C14—C15 | 1.351 (4) |
| C1—C2 | 1.511 (3) | C14—N1 | 1.366 (3) |
| C2—C3 | 1.370 (3) | C14—H14 | 0.9300 |
| C2—C8 | 1.427 (3) | C15—N2 | 1.357 (4) |
| C3—C4 | 1.403 (3) | C15—H15 | 0.9300 |
| C3—H3 | 0.9300 | C16—N2 | 1.468 (3) |
| C4—C5 | 1.364 (4) | C16—C17 | 1.474 (4) |
| C4—H4 | 0.9300 | C16—H16A | 0.9700 |
| C5—C7 | 1.426 (4) | C16—H16B | 0.9700 |
| C5—C6 | 1.503 (3) | C17—C17i | 1.502 (5) |
| C6—O3 | 1.236 (3) | C17—H17A | 0.9700 |
| C6—O4 | 1.258 (3) | C17—H17B | 0.9700 |
| C7—C8 | 1.418 (3) | O1—Cd1ii | 2.2344 (17) |
| C7—C12 | 1.421 (4) | O1W—Cd1ii | 2.2995 (14) |
| C8—C9 | 1.414 (4) | O1W—HW11 | 0.76 (3) |
| C9—C10 | 1.363 (4) | O4—Cd1iii | 2.3096 (16) |
| C9—H9 | 0.9300 | O4—Cd1iv | 2.4848 (15) |
| C10—C11 | 1.396 (5) | Cd1—N1 | 2.264 (2) |
| C10—H10 | 0.9300 | Cd1—O2 | 2.2746 (17) |
| C11—C12 | 1.351 (5) | Cd1—O1ii | 2.2344 (17) |
| C11—H11 | 0.9300 | Cd1—O4iii | 2.3096 (16) |
| C12—H12 | 0.9300 | Cd1—O4v | 2.4847 (15) |
| C13—N1 | 1.319 (3) | Cd1—O1W | 2.2995 (14) |
| C13—N2 | 1.332 (4) | ||
| O2—C1—O1 | 127.1 (2) | C14—C15—H15 | 126.6 |
| O2—C1—C2 | 116.9 (2) | N2—C15—H15 | 126.6 |
| O1—C1—C2 | 116.1 (2) | N2—C16—C17 | 113.7 (3) |
| C3—C2—C8 | 119.3 (2) | N2—C16—H16A | 108.8 |
| C3—C2—C1 | 119.0 (2) | C17—C16—H16A | 108.8 |
| C8—C2—C1 | 121.6 (2) | N2—C16—H16B | 108.8 |
| C2—C3—C4 | 121.5 (2) | C17—C16—H16B | 108.8 |
| C2—C3—H3 | 119.3 | H16A—C16—H16B | 107.7 |
| C4—C3—H3 | 119.3 | C16—C17—C17i | 114.3 (3) |
| C5—C4—C3 | 120.3 (2) | C16—C17—H17A | 108.7 |
| C5—C4—H4 | 119.8 | C17i—C17—H17A | 108.7 |
| C3—C4—H4 | 119.8 | C16—C17—H17B | 108.7 |
| C4—C5—C7 | 120.2 (2) | C17i—C17—H17B | 108.7 |
| C4—C5—C6 | 120.4 (2) | H17A—C17—H17B | 107.6 |
| C7—C5—C6 | 119.0 (2) | C13—N1—C14 | 105.2 (2) |
| O3—C6—O4 | 124.4 (2) | C13—N1—Cd1 | 124.23 (18) |
| O3—C6—C5 | 115.0 (2) | C14—N1—Cd1 | 129.70 (17) |
| O4—C6—C5 | 120.5 (2) | C13—N2—C15 | 106.8 (2) |
| C8—C7—C12 | 119.2 (2) | C13—N2—C16 | 126.7 (3) |
| C8—C7—C5 | 119.0 (2) | C15—N2—C16 | 126.4 (3) |
| C12—C7—C5 | 121.7 (2) | C1—O1—Cd1ii | 138.66 (17) |
| C9—C8—C7 | 118.2 (2) | C1—O2—Cd1 | 132.78 (16) |
| C9—C8—C2 | 122.5 (2) | Cd1—O1W—Cd1ii | 114.29 (11) |
| C7—C8—C2 | 119.2 (2) | Cd1—O1W—HW11 | 101 (2) |
| C10—C9—C8 | 120.5 (3) | Cd1ii—O1W—HW11 | 115 (2) |
| C10—C9—H9 | 119.8 | C6—O4—Cd1iii | 125.42 (15) |
| C8—C9—H9 | 119.8 | C6—O4—Cd1iv | 124.57 (15) |
| C9—C10—C11 | 121.3 (3) | Cd1iii—O4—Cd1iv | 107.96 (6) |
| C9—C10—H10 | 119.4 | O1ii—Cd1—N1 | 173.89 (7) |
| C11—C10—H10 | 119.4 | O1ii—Cd1—O2 | 89.23 (7) |
| C12—C11—C10 | 120.1 (3) | N1—Cd1—O2 | 84.66 (7) |
| C12—C11—H11 | 119.9 | O1ii—Cd1—O1W | 92.34 (7) |
| C10—C11—H11 | 119.9 | N1—Cd1—O1W | 87.83 (7) |
| C11—C12—C7 | 120.7 (3) | O2—Cd1—O1W | 89.30 (6) |
| C11—C12—H12 | 119.7 | O1ii—Cd1—O4iii | 89.03 (6) |
| C7—C12—H12 | 119.7 | N1—Cd1—O4iii | 93.33 (7) |
| N1—C13—N2 | 111.8 (3) | O2—Cd1—O4iii | 114.98 (7) |
| N1—C13—H13 | 124.1 | O1W—Cd1—O4iii | 155.70 (5) |
| N2—C13—H13 | 124.1 | O1ii—Cd1—O4v | 94.20 (7) |
| C15—C14—N1 | 109.4 (2) | N1—Cd1—O4v | 91.89 (7) |
| C15—C14—H14 | 125.3 | O2—Cd1—O4v | 172.29 (6) |
| N1—C14—H14 | 125.3 | O1W—Cd1—O4v | 83.67 (5) |
| C14—C15—N2 | 106.8 (2) | O4iii—Cd1—O4v | 72.04 (6) |
Symmetry codes: (i) −x, y, −z−1/2; (ii) −x+1, y, −z+1/2; (iii) −x+1/2, −y+1/2, −z; (iv) x−1/2, y−1/2, z; (v) x+1/2, y+1/2, z.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1W—HW11···O3v | 0.76 (3) | 1.80 (3) | 2.549 (2) | 169 (3) |
Symmetry codes: (v) x+1/2, y+1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB2837).
References
- Bruker (1998). SMART, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Ma, J.-F., Yang, J., Zheng, G.-L., Li, L. & Liu, J.-F. (2003). Inorg. Chem.42, 7531–7534. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Yang, J., Ma, J.-F., Batten, S. R. & Su, Z.-M. (2008). Chem. Commun pp. 2233–2235. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037525/hb2837sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037525/hb2837Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


