Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Nov 8;64(Pt 12):o2279. doi: 10.1107/S1600536808035496

Di-4-pyridyl sulfide–isophthalic acid (1/1)

Jian-Hua Qin a,*, Xiao-Dong Li a, Jian-Ge Wang a
PMCID: PMC2960055  PMID: 21581259

Abstract

In the heteromolecular title structure, C10H8N2S·C8H6O4, the two components are linked by O—H⋯N hydrogen bonds to form a one-dimensional chain. These chains are further inter­connected by weak inter­molecular C—H⋯O hydrogen bonds and weak C—H⋯π inter­actions to generate a three-dimensional supra­molecular structure.

Related literature

For C—H⋯O hydrogen bonds, see: Bhogala et al. (2005); Wang et al. (2008). For C—H⋯π inter­actions, see: Fun & Kia (2008).graphic file with name e-64-o2279-scheme1.jpg

Experimental

Crystal data

  • C10H8N2S·C8H6O4

  • M r = 354.37

  • Triclinic, Inline graphic

  • a = 6.618 (6) Å

  • b = 8.200 (7) Å

  • c = 16.013 (13) Å

  • α = 88.808 (11)°

  • β = 79.340 (11)°

  • γ = 79.275 (11)°

  • V = 839.0 (12) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 291 (2) K

  • 0.47 × 0.30 × 0.11 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1997) T min = 0.905, T max = 0.977

  • 6280 measured reflections

  • 3084 independent reflections

  • 1885 reflections with I > 2σ(I)

  • R int = 0.020

Refinement

  • R[F 2 > 2σ(F 2)] = 0.080

  • wR(F 2) = 0.269

  • S = 1.08

  • 3084 reflections

  • 228 parameters

  • H-atom parameters constrained

  • Δρmax = 1.05 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808035496/si2125sup1.cif

e-64-o2279-sup1.cif (17.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035496/si2125Isup2.hkl

e-64-o2279-Isup2.hkl (151.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C17—H17⋯O2i 0.93 2.45 3.334 (6) 159
C16—H16⋯O2ii 0.93 2.58 3.180 (6) 123
C13—H13⋯O4iii 0.93 2.31 3.141 (6) 148
C12—H12⋯Cg1iv 0.93 2.98 3.570 (6) 123
O3—H3D⋯N1v 0.82 1.83 2.634 (5) 164
O1—H1D⋯N2vi 0.82 1.84 2.662 (5) 179

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic. Cg1 is the centroid of the C2–C7 isophthalic acid ring.

Acknowledgments

The authors thank Luo Yang Normal University for supporting this work.

supplementary crystallographic information

Comment

The asymmetric unit consists of one 4,4'-dipyridyl sulfide molecule and one isophthalic acid molecule (Fig. 1). The hetero-molecularar components of (I) are linked by O—H···N hydrogen bonds to form a one-dimensional chain (Table 1 & Fig. 2). These chains interact with each other via weak intermolecular C—H···O hydrogen bonds and C—H···π interactions. Within the asymmetric unit, the atoms C13, C16 and C17 act as hydrogen-bond donors (Table 1). The bond lengths and angles of these three hydrogen bonds are comparable with literature data (Bhogala et al., 2005; Wang et al., 2008). These hydrogen bonds, albeit rather weak, link the chains into two-dimensional double layers structure, which are further connected by weak intermolecular C—H···π interactions (Table 1) to generate a three-dimensional supramolecular structure (Fig. 3).

Experimental

4,4'-dipyridyl sulfide (18.84 mg, 0.1 mmol), isophthalic acid (16.51 mg, 0.1 mmol), and NaOH (8.13 mg, 0.2 mmol) were added to a H2O solution (15 ml) in a Teflonlined stainless steel reactor. The mixture was heated at 473 K for 3 d, and then slowly cooled down to room temperature. Colorless crystals of the title compound were obtained.

Refinement

All hydrogen atoms were positioned geometrically and treated as riding, with C—H bonding lengths constrained to 0.93 (aromatic CH) and O—H bonding lengths constrained to 0.82 (OH), and with Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

A view of the hetero-molecular components of the title compound with the atom labelling scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

A view of the one-dimensional hydrogen-bond chain motif.

Fig. 3.

Fig. 3.

A view of the C—H···O hydrogen bond and the C—H···π interactions in the crystal structure of the title compound.

Crystal data

C10H8N2S·C8H6O4 Z = 2
Mr = 354.37 F000 = 368
Triclinic, P1 Dx = 1.403 Mg m3
a = 6.618 (6) Å Mo Kα radiation λ = 0.71073 Å
b = 8.200 (7) Å Cell parameters from 1298 reflections
c = 16.013 (13) Å θ = 2.9–21.2º
α = 88.808 (11)º µ = 0.22 mm1
β = 79.340 (11)º T = 291 (2) K
γ = 79.275 (11)º Block, colorless
V = 839.0 (12) Å3 0.47 × 0.30 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer 3084 independent reflections
Radiation source: fine-focus sealed tube 1885 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.020
T = 291(2) K θmax = 25.5º
φ and ω scans θmin = 2.5º
Absorption correction: multi-scan(SADABS; Bruker, 1997) h = −8→7
Tmin = 0.905, Tmax = 0.977 k = −9→9
6280 measured reflections l = −19→19

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.080 H-atom parameters constrained
wR(F2) = 0.269   w = 1/[σ2(Fo2) + (0.1354P)2 + 0.4871P] where P = (Fo2 + 2Fc2)/3
S = 1.08 (Δ/σ)max < 0.001
3084 reflections Δρmax = 1.05 e Å3
228 parameters Δρmin = −0.28 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.2928 (2) 0.9132 (2) 0.77591 (8) 0.1000 (6)
O1 0.9948 (5) 0.7101 (5) 0.0723 (2) 0.0868 (10)
H1D 0.9203 0.7396 0.0371 0.130*
O2 0.7255 (6) 0.5957 (5) 0.1306 (2) 0.0993 (12)
O3 0.7222 (6) 0.3409 (5) 0.4098 (2) 0.0958 (12)
H3D 0.6703 0.3073 0.4560 0.144*
O4 1.0069 (6) 0.2941 (6) 0.4653 (2) 0.1133 (14)
N1 0.5677 (7) 1.1790 (5) 0.5430 (2) 0.0733 (10)
N2 0.7476 (6) 0.8077 (5) 0.9602 (2) 0.0777 (11)
C1 0.8967 (7) 0.6270 (6) 0.1321 (3) 0.0716 (12)
C2 1.0110 (6) 0.5765 (5) 0.2024 (3) 0.0636 (10)
C3 1.2038 (7) 0.6166 (6) 0.2056 (3) 0.0724 (12)
H3 1.2694 0.6727 0.1605 0.087*
C4 1.2987 (7) 0.5754 (6) 0.2735 (3) 0.0833 (14)
H4 1.4264 0.6058 0.2751 0.100*
C5 1.2062 (7) 0.4887 (6) 0.3400 (3) 0.0772 (12)
H5 1.2721 0.4597 0.3861 0.093*
C6 1.0141 (6) 0.4447 (5) 0.3378 (3) 0.0639 (10)
C7 0.9189 (6) 0.4878 (5) 0.2695 (2) 0.0637 (10)
H7 0.7912 0.4574 0.2677 0.076*
C8 0.9164 (7) 0.3505 (6) 0.4099 (3) 0.0734 (12)
C9 0.6939 (8) 1.0749 (6) 0.5857 (3) 0.0761 (13)
H9 0.8376 1.0583 0.5661 0.091*
C10 0.6199 (8) 0.9931 (6) 0.6562 (3) 0.0750 (12)
H10 0.7120 0.9208 0.6834 0.090*
C11 0.4099 (7) 1.0177 (6) 0.6868 (3) 0.0691 (11)
C12 0.2817 (8) 1.1212 (6) 0.6439 (3) 0.0782 (13)
H12 0.1377 1.1399 0.6631 0.094*
C13 0.3637 (8) 1.1986 (6) 0.5722 (3) 0.0795 (13)
H13 0.2728 1.2673 0.5429 0.095*
C14 0.6067 (8) 0.9811 (6) 0.8561 (3) 0.0833 (14)
H14 0.6056 1.0787 0.8254 0.100*
C15 0.7391 (8) 0.9425 (6) 0.9127 (3) 0.0842 (15)
H15 0.8286 1.0150 0.9182 0.101*
C16 0.6162 (10) 0.7091 (7) 0.9505 (3) 0.0917 (16)
H16 0.6169 0.6143 0.9834 0.110*
C17 0.4795 (8) 0.7377 (6) 0.8952 (3) 0.0855 (15)
H17 0.3896 0.6644 0.8916 0.103*
C18 0.4760 (7) 0.8763 (6) 0.8449 (3) 0.0716 (12)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0992 (10) 0.1442 (14) 0.0722 (9) −0.0626 (10) −0.0181 (7) 0.0271 (8)
O1 0.091 (2) 0.117 (3) 0.0667 (19) −0.058 (2) −0.0187 (16) 0.0361 (18)
O2 0.097 (2) 0.150 (3) 0.076 (2) −0.074 (2) −0.0345 (18) 0.054 (2)
O3 0.093 (2) 0.138 (3) 0.074 (2) −0.057 (2) −0.0301 (18) 0.053 (2)
O4 0.085 (2) 0.152 (4) 0.103 (3) −0.016 (2) −0.032 (2) 0.068 (3)
N1 0.095 (3) 0.077 (2) 0.0527 (19) −0.028 (2) −0.0184 (19) 0.0174 (17)
N2 0.099 (3) 0.088 (3) 0.056 (2) −0.045 (2) −0.0143 (19) 0.0178 (19)
C1 0.074 (3) 0.094 (3) 0.056 (2) −0.043 (2) −0.010 (2) 0.018 (2)
C2 0.062 (2) 0.071 (3) 0.059 (2) −0.021 (2) −0.0061 (19) 0.0076 (19)
C3 0.069 (3) 0.084 (3) 0.070 (3) −0.035 (2) −0.007 (2) 0.011 (2)
C4 0.063 (3) 0.100 (4) 0.092 (3) −0.031 (3) −0.013 (2) 0.011 (3)
C5 0.069 (3) 0.089 (3) 0.074 (3) −0.010 (2) −0.020 (2) 0.010 (2)
C6 0.061 (2) 0.067 (3) 0.063 (2) −0.0106 (19) −0.0114 (19) 0.010 (2)
C7 0.061 (2) 0.073 (3) 0.060 (2) −0.023 (2) −0.0099 (19) 0.012 (2)
C8 0.072 (3) 0.082 (3) 0.063 (3) −0.008 (2) −0.012 (2) 0.017 (2)
C9 0.076 (3) 0.091 (3) 0.058 (2) −0.016 (2) −0.005 (2) 0.016 (2)
C10 0.082 (3) 0.080 (3) 0.057 (2) −0.007 (2) −0.008 (2) 0.019 (2)
C11 0.079 (3) 0.076 (3) 0.058 (2) −0.025 (2) −0.014 (2) 0.003 (2)
C12 0.071 (3) 0.092 (3) 0.072 (3) −0.019 (2) −0.010 (2) −0.001 (2)
C13 0.084 (3) 0.084 (3) 0.077 (3) −0.017 (3) −0.033 (3) 0.012 (3)
C14 0.107 (4) 0.085 (3) 0.072 (3) −0.043 (3) −0.027 (3) 0.024 (2)
C15 0.108 (4) 0.096 (3) 0.063 (3) −0.056 (3) −0.017 (3) 0.021 (2)
C16 0.136 (5) 0.087 (3) 0.068 (3) −0.058 (3) −0.024 (3) 0.022 (2)
C17 0.111 (4) 0.093 (3) 0.068 (3) −0.059 (3) −0.019 (3) 0.008 (3)
C18 0.083 (3) 0.086 (3) 0.049 (2) −0.033 (2) −0.002 (2) 0.005 (2)

Geometric parameters (Å, °)

S1—C18 1.767 (5) C5—H5 0.9300
S1—C11 1.776 (5) C6—C7 1.369 (6)
O1—C1 1.308 (5) C6—C8 1.490 (6)
O1—H1D 0.8200 C7—H7 0.9300
O2—C1 1.212 (5) C9—C10 1.361 (6)
O3—C8 1.302 (6) C9—H9 0.9300
O3—H3D 0.8200 C10—C11 1.364 (6)
O4—C8 1.198 (5) C10—H10 0.9300
N1—C13 1.325 (6) C11—C12 1.356 (6)
N1—C9 1.347 (6) C12—C13 1.373 (7)
N2—C16 1.323 (6) C12—H12 0.9300
N2—C15 1.327 (6) C13—H13 0.9300
C1—C2 1.480 (6) C14—C18 1.364 (6)
C2—C3 1.385 (6) C14—C15 1.367 (7)
C2—C7 1.394 (5) C14—H14 0.9300
C3—C4 1.360 (6) C15—H15 0.9300
C3—H3 0.9300 C16—C17 1.366 (7)
C4—C5 1.380 (6) C16—H16 0.9300
C4—H4 0.9300 C17—C18 1.379 (6)
C5—C6 1.391 (6) C17—H17 0.9300
C18—S1—C11 106.3 (2) N1—C9—H9 118.6
C1—O1—H1D 109.5 C10—C9—H9 118.6
C8—O3—H3D 109.5 C9—C10—C11 119.6 (4)
C13—N1—C9 117.0 (4) C9—C10—H10 120.2
C16—N2—C15 115.8 (4) C11—C10—H10 120.2
O2—C1—O1 122.8 (4) C12—C11—C10 118.0 (4)
O2—C1—C2 122.8 (4) C12—C11—S1 117.9 (4)
O1—C1—C2 114.3 (4) C10—C11—S1 124.0 (4)
C3—C2—C7 118.4 (4) C11—C12—C13 120.2 (4)
C3—C2—C1 122.9 (4) C11—C12—H12 119.9
C7—C2—C1 118.7 (4) C13—C12—H12 119.9
C4—C3—C2 121.1 (4) N1—C13—C12 122.4 (4)
C4—C3—H3 119.5 N1—C13—H13 118.8
C2—C3—H3 119.5 C12—C13—H13 118.8
C3—C4—C5 120.3 (4) C18—C14—C15 119.8 (4)
C3—C4—H4 119.9 C18—C14—H14 120.1
C5—C4—H4 119.9 C15—C14—H14 120.1
C4—C5—C6 119.8 (4) N2—C15—C14 123.9 (4)
C4—C5—H5 120.1 N2—C15—H15 118.1
C6—C5—H5 120.1 C14—C15—H15 118.1
C7—C6—C5 119.6 (4) N2—C16—C17 124.2 (4)
C7—C6—C8 121.2 (4) N2—C16—H16 117.9
C5—C6—C8 119.2 (4) C17—C16—H16 117.9
C6—C7—C2 120.9 (4) C16—C17—C18 119.3 (4)
C6—C7—H7 119.6 C16—C17—H17 120.3
C2—C7—H7 119.6 C18—C17—H17 120.3
O4—C8—O3 122.8 (4) C14—C18—C17 116.9 (4)
O4—C8—C6 122.5 (4) C14—C18—S1 124.6 (4)
O3—C8—C6 114.7 (4) C17—C18—S1 118.4 (4)
N1—C9—C10 122.8 (4)
O2—C1—C2—C3 −178.0 (5) N1—C9—C10—C11 −1.0 (8)
O1—C1—C2—C3 1.2 (7) C9—C10—C11—C12 1.5 (7)
O2—C1—C2—C7 0.6 (7) C9—C10—C11—S1 177.7 (4)
O1—C1—C2—C7 179.8 (4) C18—S1—C11—C12 −152.0 (4)
C7—C2—C3—C4 −2.1 (7) C18—S1—C11—C10 31.8 (5)
C1—C2—C3—C4 176.5 (4) C10—C11—C12—C13 −0.4 (7)
C2—C3—C4—C5 1.6 (8) S1—C11—C12—C13 −176.8 (4)
C3—C4—C5—C6 −0.6 (8) C9—N1—C13—C12 1.9 (7)
C4—C5—C6—C7 0.1 (7) C11—C12—C13—N1 −1.4 (8)
C4—C5—C6—C8 179.8 (4) C16—N2—C15—C14 −0.5 (8)
C5—C6—C7—C2 −0.6 (7) C18—C14—C15—N2 −1.3 (8)
C8—C6—C7—C2 179.7 (4) C15—N2—C16—C17 0.9 (8)
C3—C2—C7—C6 1.6 (6) N2—C16—C17—C18 0.7 (9)
C1—C2—C7—C6 −177.0 (4) C15—C14—C18—C17 2.7 (8)
C7—C6—C8—O4 170.8 (5) C15—C14—C18—S1 178.4 (4)
C5—C6—C8—O4 −8.8 (7) C16—C17—C18—C14 −2.4 (8)
C7—C6—C8—O3 −12.1 (6) C16—C17—C18—S1 −178.4 (4)
C5—C6—C8—O3 168.3 (4) C11—S1—C18—C14 34.9 (5)
C13—N1—C9—C10 −0.7 (7) C11—S1—C18—C17 −149.5 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C17—H17···O2i 0.93 2.45 3.334 (6) 159
C16—H16···O2ii 0.93 2.58 3.180 (6) 123
C13—H13···O4iii 0.93 2.31 3.141 (6) 148
C12—H12···Cg1iv 0.93 2.98 3.570 (6) 123
O3—H3D···N1v 0.82 1.83 2.634 (5) 164
O1—H1D···N2vi 0.82 1.84 2.662 (5) 179

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y, z+1; (iii) x−1, y+1, z; (iv) −x+1, −y+2, −z+1; (v) x, y−1, z; (vi) x, y, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SI2125).

References

  1. Bhogala, B. R., Basavoju, S. & Nangia, A. (2005). Cryst. Growth Des.5, 1683–1686.
  2. Bruker (1997). SMART, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Fun, H.-K. & Kia, R. (2008). Acta Cryst. E64, m1116–m1117. [DOI] [PMC free article] [PubMed]
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Wang, Y.-T., Tang, G.-M., Zhang, Y.-C. & Wan, W.-Z. (2008). Acta Cryst. E64, o1753. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808035496/si2125sup1.cif

e-64-o2279-sup1.cif (17.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035496/si2125Isup2.hkl

e-64-o2279-Isup2.hkl (151.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES