Abstract
In the molecule of the title compound, [HgBr2(C10H9N3)], the HgII atom is four-coordinated in a distorted tetrahedral configuration by two N atoms from the chelating di-2-pyridylamine ligand and by two Br atoms. In the crystal structure, intermolecular N—H⋯Br hydrogen bonds link the molecules into centrosymmetric dimers. There are π–π contacts between the pyridine rings [centroid–centroid distances = 3.9662 (5) and 3.9321 (4) Å]. There also exists a C—H⋯π contact between the pyridine CH group and a pyridine ring.
Related literature
For related literature, see: Ahmadi et al. (2008 ▶); Kalateh et al. (2008 ▶); Khavasi et al. (2008 ▶); Tadayon Pour et al. (2008 ▶); Yousefi, Rashidi Vahid et al. (2008 ▶); Yousefi, Tadayon Pour et al. (2008 ▶). For related structures, see: Xie et al. (2004 ▶); Hughes et al. (1985 ▶).
Experimental
Crystal data
[HgBr2(C10H9N3)]
M r = 531.59
Triclinic,
a = 8.1284 (16) Å
b = 8.7645 (18) Å
c = 9.912 (2) Å
α = 113.45 (3)°
β = 98.41 (3)°
γ = 97.79 (3)°
V = 626.1 (3) Å3
Z = 2
Mo Kα radiation
μ = 18.65 mm−1
T = 120 (2) K
0.40 × 0.35 × 0.25 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: numerical (shape of crystal determined optically) (X-SHAPE and X-RED; Stoe & Cie, 2005 ▶)T min = 0.016, T max = 0.080
7839 measured reflections
3350 independent reflections
3234 reflections with I > 2σ(I)
R int = 0.087
Refinement
R[F 2 > 2σ(F 2)] = 0.053
wR(F 2) = 0.140
S = 1.15
3350 reflections
145 parameters
H-atom parameters constrained
Δρmax = 4.33 e Å−3
Δρmin = −6.54 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808038129/hk2575sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038129/hk2575Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Br1—Hg1 | 2.5106 (11) |
| Br2—Hg1 | 2.5549 (11) |
| N1—Hg1 | 2.301 (7) |
| N3—Hg1 | 2.350 (7) |
| N1—Hg1—N3 | 81.1 (2) |
| N1—Hg1—Br1 | 109.13 (17) |
| N3—Hg1—Br1 | 117.16 (17) |
| N1—Hg1—Br2 | 125.41 (17) |
| N3—Hg1—Br2 | 96.23 (18) |
| Br1—Hg1—Br2 | 119.68 (3) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2A⋯Br2i | 0.86 | 2.62 | 3.472 (3) | 170 |
| C2—H2⋯Cg3ii | 0.93 | 3.20 | 3.587 (3) | 107 |
Symmetry codes: (i)
; (ii)
. Cg3 is the centroid of the N3/C6–C10 ring.
Acknowledgments
We are grateful to the Islamic Azad University, Shahr-e-Rey Branch, for financial support.
supplementary crystallographic information
Comment
Recently, we reported the syntheses and crystal structures of [Hg(4,4'-dmbpy) I2], (II), (Yousefi, Tadayon Pour et al., 2008), [Hg(5,5'-dmbpy)I2], (III), (Tadayon Pour, et al., 2008), [Hg(dmphen)I2], (IV), (Yousefi, Rashidi Vahid et al., 2008), {[HgCl(dm4bt)]2(µ-Cl)2}, (V), (Khavasi et al., 2008), [Hg(6-mbpy)Cl2], (VI), (Ahmadi et al., 2008) and [{HgBr(4,4'-dmbpy)}2(µ-Br)2], (VII), (Kalateh et al., 2008) [where 4,4'-dmbpy is 4,4'-dimethyl-2,2'-bipyridine, 5,5'-dmbpy is 5,5'-dimethyl-2,2'- bipyridine, 6-mbpy is 6-methyl-2,2'-bipyridine, dmphen is 4,7-diphenyl-1,10- phenanthroline and dm4bt is 2,2'-dimethyl-4,4'-bithiazole]. There are two HgII complexes, with formula, [Hg(N—N)Br2], such as [Hg(TPA)Br2], (VIII), (Xie et al., 2004) and [Hg(TPD)Br2], (IX), (Hughes et al., 1985) [where TPA is tris(2-pyridyl)amine and TPD is N,N,N',N'-Tetramethyl-o-phenylenediamine] have been synthesized and characterized by single-crystal X-ray diffraction methods. We report herein the synthesis and crystal structure of the title compound, (I).
In the title compound, (Fig. 1), the HgII atom is four-coordinated in a distorted tetrahedral configuration by two N atoms from di-2-pyridylamine and two Br atoms. The Hg-Br and Hg-N bond lengths and angles (Table 1) are within normal ranges, as in (VIII).
In the crystal structure, intermolecular N-H···Br hydrogen bonds link the molecules into centrosymmetric dimers (Fig. 2), in which they may be effective in the stabilization of the structure. The π-π contacts between the pyridine rings Cg2···Cg2i and Cg2···Cg3ii [symmetry codes: (i) x, -y, 2 - z, (ii) 1 - x,- y, 2 - z, where Cg2 and Cg3 are centroids of the rings A (N1/C1-C5) and B (N3/C6-C10), respectively] may further stabilize the structure, with centroid-centroid distances of 3.9662 (5) %A and 3.9321 (4) %A, respectively. There also exists a C—H···π contact (Table 1) between the pyridine CH group and pyridine ring.
Experimental
For the preparation of the title compound, (I), a solution of di-2-pyridylamine (0.25 g, 1.43 mmol) in methanol (20 ml) was added to a solution of HgBr2 (0.51 g, 1.43 mmol) in acetonitrile (20 ml) and the resulting colorless solution was stirred for 20 min at 313 K. This solution was left to evaporate slowly at room temperature. After one week, colorless prismatic crystals of the title compound were isolated (yield; 0.55 g, 72.3%).
Refinement
H atoms were positioned geometrically, with N-H = 0.86 Å (for NH) and C-H = 0.93 Å for aromatic H and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C,N). The highest and lowest peaks are located 0.69 Å and 0.78 Å from Hg1 atom, respectively.
Figures
Fig. 1.
The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Fig. 2.
A partial packing diagram of the title compound.
Crystal data
| [HgBr2(C10H9N3)] | Z = 2 |
| Mr = 531.59 | F000 = 480 |
| Triclinic, P1 | Dx = 2.820 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
| a = 8.1284 (16) Å | Cell parameters from 1657 reflections |
| b = 8.7645 (18) Å | θ = 2.3–29.2º |
| c = 9.912 (2) Å | µ = 18.65 mm−1 |
| α = 113.45 (3)º | T = 120 (2) K |
| β = 98.41 (3)º | Prism, colorless |
| γ = 97.79 (3)º | 0.40 × 0.35 × 0.25 mm |
| V = 626.1 (3) Å3 |
Data collection
| Bruker SMART CCD area-detector diffractometer | 3350 independent reflections |
| Radiation source: fine-focus sealed tube | 3234 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.087 |
| T = 120(2) K | θmax = 29.2º |
| φ and ω scans | θmin = 2.3º |
| Absorption correction: numerical(shape of crystal determined optically) | h = −11→11 |
| Tmin = 0.016, Tmax = 0.080 | k = −11→10 |
| 7839 measured reflections | l = −12→13 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.053 | H-atom parameters constrained |
| wR(F2) = 0.140 | w = 1/[σ2(Fo2) + (0.0882P)2 + 2.3955P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.15 | (Δ/σ)max = 0.059 |
| 3350 reflections | Δρmax = 4.33 e Å−3 |
| 145 parameters | Δρmin = −6.54 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Hg1 | 0.28140 (3) | 0.22806 (4) | 0.84793 (3) | 0.02226 (15) | |
| Br1 | 0.03376 (10) | 0.29535 (11) | 0.71493 (10) | 0.0259 (2) | |
| Br2 | 0.58403 (10) | 0.34148 (10) | 0.83842 (9) | 0.0219 (2) | |
| N1 | 0.2053 (9) | 0.1755 (9) | 1.0425 (8) | 0.0195 (12) | |
| N2 | 0.3018 (9) | −0.0818 (8) | 0.9915 (8) | 0.0190 (12) | |
| H2A | 0.3426 | −0.1362 | 1.0395 | 0.023* | |
| N3 | 0.3006 (9) | −0.0591 (8) | 0.7601 (8) | 0.0192 (12) | |
| C1 | 0.1347 (11) | 0.2988 (10) | 1.1369 (11) | 0.0239 (15) | |
| H1 | 0.1098 | 0.3845 | 1.1096 | 0.029* | |
| C2 | 0.0991 (11) | 0.3023 (11) | 1.2678 (11) | 0.0248 (16) | |
| H2 | 0.0516 | 0.3881 | 1.3288 | 0.030* | |
| C3 | 0.1363 (11) | 0.1728 (11) | 1.3080 (10) | 0.0247 (15) | |
| H3 | 0.1151 | 0.1727 | 1.3977 | 0.030* | |
| C4 | 0.2037 (11) | 0.0462 (11) | 1.2157 (10) | 0.0225 (14) | |
| H4 | 0.2279 | −0.0412 | 1.2407 | 0.027* | |
| C5 | 0.2355 (9) | 0.0519 (10) | 1.0815 (9) | 0.0178 (13) | |
| C6 | 0.3175 (9) | −0.1477 (10) | 0.8430 (9) | 0.0172 (13) | |
| C7 | 0.3535 (10) | −0.3113 (10) | 0.7834 (10) | 0.0215 (14) | |
| H7 | 0.3679 | −0.3693 | 0.8437 | 0.026* | |
| C8 | 0.3671 (11) | −0.3850 (11) | 0.6355 (10) | 0.0249 (15) | |
| H8 | 0.3886 | −0.4940 | 0.5944 | 0.030* | |
| C9 | 0.3485 (12) | −0.2952 (11) | 0.5481 (10) | 0.0262 (16) | |
| H9 | 0.3575 | −0.3414 | 0.4479 | 0.031* | |
| C10 | 0.3158 (11) | −0.1340 (12) | 0.6165 (10) | 0.0248 (16) | |
| H10 | 0.3034 | −0.0731 | 0.5587 | 0.030* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Hg1 | 0.0242 (2) | 0.0212 (2) | 0.0290 (2) | 0.00845 (13) | 0.00573 (13) | 0.01720 (14) |
| Br1 | 0.0239 (4) | 0.0253 (4) | 0.0341 (4) | 0.0070 (3) | 0.0012 (3) | 0.0194 (3) |
| Br2 | 0.0237 (4) | 0.0208 (4) | 0.0267 (4) | 0.0057 (3) | 0.0061 (3) | 0.0151 (3) |
| N1 | 0.023 (3) | 0.016 (3) | 0.019 (3) | 0.006 (2) | 0.001 (2) | 0.008 (2) |
| N2 | 0.026 (3) | 0.015 (3) | 0.022 (3) | 0.007 (2) | 0.004 (2) | 0.013 (2) |
| N3 | 0.024 (3) | 0.016 (3) | 0.018 (3) | 0.005 (2) | 0.002 (2) | 0.009 (2) |
| C1 | 0.025 (4) | 0.015 (3) | 0.032 (4) | 0.005 (3) | 0.003 (3) | 0.011 (3) |
| C2 | 0.024 (3) | 0.020 (3) | 0.030 (4) | 0.007 (3) | 0.007 (3) | 0.009 (3) |
| C3 | 0.029 (4) | 0.024 (4) | 0.022 (3) | 0.006 (3) | 0.009 (3) | 0.010 (3) |
| C4 | 0.026 (3) | 0.021 (3) | 0.024 (4) | 0.005 (3) | 0.003 (3) | 0.012 (3) |
| C5 | 0.014 (3) | 0.017 (3) | 0.020 (3) | 0.001 (2) | 0.002 (2) | 0.007 (3) |
| C6 | 0.013 (3) | 0.016 (3) | 0.020 (3) | −0.002 (2) | −0.002 (2) | 0.009 (3) |
| C7 | 0.024 (3) | 0.017 (3) | 0.024 (4) | 0.004 (3) | 0.004 (3) | 0.010 (3) |
| C8 | 0.027 (4) | 0.022 (4) | 0.023 (4) | 0.005 (3) | 0.002 (3) | 0.008 (3) |
| C9 | 0.037 (4) | 0.021 (4) | 0.017 (3) | 0.005 (3) | 0.003 (3) | 0.006 (3) |
| C10 | 0.030 (4) | 0.029 (4) | 0.020 (3) | 0.008 (3) | 0.004 (3) | 0.015 (3) |
Geometric parameters (Å, °)
| Br1—Hg1 | 2.5106 (11) | C5—N1 | 1.327 (10) |
| Br2—Hg1 | 2.5549 (11) | C5—N2 | 1.393 (10) |
| N1—Hg1 | 2.301 (7) | C6—N3 | 1.342 (10) |
| N2—H2A | 0.8600 | C6—N2 | 1.384 (10) |
| N3—Hg1 | 2.350 (7) | C6—C7 | 1.408 (11) |
| C1—C2 | 1.360 (13) | C7—C8 | 1.376 (12) |
| C1—N1 | 1.376 (11) | C7—H7 | 0.9300 |
| C1—H1 | 0.9300 | C8—C9 | 1.389 (13) |
| C2—C3 | 1.398 (13) | C8—H8 | 0.9300 |
| C2—H2 | 0.9300 | C9—C10 | 1.385 (12) |
| C3—C4 | 1.368 (12) | C9—H9 | 0.9300 |
| C3—H3 | 0.9300 | C10—N3 | 1.342 (11) |
| C4—C5 | 1.410 (11) | C10—H10 | 0.9300 |
| C4—H4 | 0.9300 | ||
| N1—Hg1—N3 | 81.1 (2) | C2—C3—H3 | 119.9 |
| N1—Hg1—Br1 | 109.13 (17) | C3—C4—C5 | 118.2 (8) |
| N3—Hg1—Br1 | 117.16 (17) | C3—C4—H4 | 120.9 |
| N1—Hg1—Br2 | 125.41 (17) | C5—C4—H4 | 120.9 |
| N3—Hg1—Br2 | 96.23 (18) | N1—C5—N2 | 121.7 (7) |
| Br1—Hg1—Br2 | 119.68 (3) | N1—C5—C4 | 122.9 (7) |
| C1—N1—Hg1 | 114.3 (5) | N2—C5—C4 | 115.4 (7) |
| C5—N1—Hg1 | 128.2 (6) | N3—C6—N2 | 121.6 (7) |
| C5—N1—C1 | 117.2 (7) | N3—C6—C7 | 121.6 (7) |
| C6—N2—C5 | 135.0 (7) | N2—C6—C7 | 116.9 (7) |
| C6—N2—H2A | 112.5 | C8—C7—C6 | 119.6 (8) |
| C5—N2—H2A | 112.5 | C8—C7—H7 | 120.2 |
| C6—N3—Hg1 | 126.5 (5) | C6—C7—H7 | 120.2 |
| C10—N3—Hg1 | 115.6 (6) | C7—C8—C9 | 119.4 (8) |
| C10—N3—C6 | 117.4 (7) | C7—C8—H8 | 120.3 |
| C2—C1—N1 | 123.6 (8) | C9—C8—H8 | 120.3 |
| C2—C1—H1 | 118.1 | C8—C9—C10 | 117.2 (8) |
| N1—C1—H1 | 118.3 | C8—C9—H9 | 121.4 |
| C1—C2—C3 | 117.9 (8) | C10—C9—H9 | 121.4 |
| C1—C2—H2 | 121.0 | N3—C10—C9 | 124.8 (8) |
| C3—C2—H2 | 121.1 | N3—C10—H10 | 117.5 |
| C4—C3—C2 | 120.2 (8) | C9—C10—H10 | 117.7 |
| C4—C3—H3 | 120.0 | ||
| C1—N1—Hg1—N3 | −166.6 (6) | C6—C7—C8—C9 | 1.3 (12) |
| C5—N1—Hg1—N3 | 20.2 (6) | C7—C8—C9—C10 | −0.3 (13) |
| C1—N1—Hg1—Br1 | −50.8 (6) | C8—C9—C10—N3 | −0.1 (14) |
| C5—N1—Hg1—Br1 | 136.0 (6) | N2—C5—N1—C1 | 178.0 (7) |
| C1—N1—Hg1—Br2 | 102.0 (5) | C4—C5—N1—C1 | −2.2 (11) |
| C5—N1—Hg1—Br2 | −71.1 (7) | N2—C5—N1—Hg1 | −9.0 (10) |
| C10—N3—Hg1—N1 | 168.0 (6) | C4—C5—N1—Hg1 | 170.8 (6) |
| C6—N3—Hg1—N1 | −20.2 (6) | C2—C1—N1—C5 | 1.8 (12) |
| C6—N3—Hg1—Br1 | −127.2 (6) | C2—C1—N1—Hg1 | −172.2 (7) |
| C10—N3—Hg1—Br1 | 61.0 (6) | N3—C6—N2—C5 | 16.3 (13) |
| C6—N3—Hg1—Br2 | 104.8 (6) | C7—C6—N2—C5 | −164.2 (8) |
| C10—N3—Hg1—Br2 | −67.0 (6) | N1—C5—N2—C6 | −16.8 (13) |
| N1—C1—C2—C3 | −0.2 (13) | C4—C5—N2—C6 | 163.3 (8) |
| C1—C2—C3—C4 | −1.0 (13) | C9—C10—N3—C6 | −0.4 (13) |
| C2—C3—C4—C5 | 0.6 (12) | C9—C10—N3—Hg1 | 172.2 (7) |
| C3—C4—C5—N1 | 1.0 (12) | N2—C6—N3—C10 | −179.2 (7) |
| C3—C4—C5—N2 | −179.1 (7) | C7—C6—N3—C10 | 1.4 (11) |
| N3—C6—C7—C8 | −1.8 (11) | N2—C6—N3—Hg1 | 9.2 (10) |
| N2—C6—C7—C8 | 178.7 (7) | C7—C6—N3—Hg1 | −170.3 (5) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2A···Br2i | 0.86 | 2.62 | 3.472 (3) | 170 |
| C2—H2···Cg3ii | 0.93 | 3.20 | 3.587 (3) | 107 |
Symmetry codes: (i) −x+1, −y, −z+2; (ii) −x+2, −y, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2575).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808038129/hk2575sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038129/hk2575Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


