Abstract
In the title compound, C12H13N, two methylene C atoms of the cyclohexene ring are disordered over two sites with occupancies of 0.591 (10) and 0.409 (10); both disorder components adopt half-chair conformations. The crystal structure is stabilized by intermolecular N—H⋯π and C—H⋯π interactions.
Related literature
For a related structure, see: Arulmozhi et al. (2008 ▶). For general background, see: Mi et al. (2003 ▶); Hewlins et al. (1984 ▶); Mohanakrishnan & Srinivasan (1995a
▶,b
▶); Kansal & Potier (1986 ▶); Phillipson & Zenk (1980 ▶); Saxton (1983 ▶); Abraham (1975 ▶).
Experimental
Crystal data
C12H13N
M r = 171.23
Orthorhombic,
a = 6.1067 (4) Å
b = 7.9488 (5) Å
c = 19.4512 (12) Å
V = 944.18 (10) Å3
Z = 4
Mo Kα radiation
μ = 0.07 mm−1
T = 293 (2) K
0.26 × 0.15 × 0.15 mm
Data collection
Bruker Kappa APEXII area-detector diffractometer
Absorption correction: none
13269 measured reflections
1777 independent reflections
1323 reflections with I > 2σ(I)
R int = 0.036
Refinement
R[F 2 > 2σ(F 2)] = 0.048
wR(F 2) = 0.123
S = 1.07
1777 reflections
137 parameters
15 restraints
H-atom parameters constrained
Δρmax = 0.14 e Å−3
Δρmin = −0.20 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038713/ci2708sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038713/ci2708Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1A⋯Cg2i | 0.86 | 2.62 | 3.327 (1) | 140 |
| C4—H4⋯Cg1i | 0.93 | 2.86 | 3.645 (1) | 143 |
| C12—H12B⋯Cg2ii | 0.97 | 2.83 | 3.577 (2) | 135 |
| C12—H12D⋯Cg2ii | 0.96 | 2.72 | 3.577 (2) | 149 |
Symmetry codes: (i)
; (ii)
.Cg1 and Cg2 are the centroids of the N1/C5–C8 and C1–C6 rings, respectively.
Acknowledgments
The authors are grateful to Dr J. Jothi Kumar, Principal of Presidency College (Autonomous), Chennai, for providing computer and internet facilities. Dr Babu Vargheese, SAIF, IIT-Madras, India, is thanked for his help with the data collection.
supplementary crystallographic information
Comment
Carbazole derivatives exhibit good charge transfer and hole transporting properties, which are being explored for a multitude of optoelectronic and photocatalytic applications, including organic light emitting diodes (OLEDs) (Mi et al., 2003). In carbazole derivatives, the preliminary study shows that the presence of oxygenated substituents increases their biological activity (Hewlins et al., 1984). The 2,3-disubstituted indoles have been used as bidentate synthons for the synthesis of various medicinally important carbazole alkaloids (Mohanakrishnan & Srinivasan, 1995a,b). Intercalation between the base pairs in DNA has been implicated for their anticancer activity. It was conceived that the benzo[b] carbazoles as isosteric analogs of pyrido[4,3-b]carbazoles, with oxygenated D-ring could mimic the anti-cancer activity of ellipticine. So it was of interest to study the anticancer activity of D-ring oxygenated benzo[b]carbazoles as it is believed that these molecules could form a stable intercalation complex with DNA (Kansal & Potier, 1986). Tetrahydrocarbazole derivatives are present in the framework of indole-type alkaloids of biological interest (Phillipson & Zenk, 1980; Saxton, 1983; Abraham, 1975). We report here the crystal structure of the title compound (Fig. 1).
Bond lengths are normal and are comparable to the corresponding values observed in 1-naphthyl-9H-carbazole-4-sulfonate (Arulmozhi et al., 2008). The dihedral angle between the C1–C6 and N1/C5—C8 rings is 0.6 (1)°. Both the major and minor conformers of the disordered cyclohexene ring adopt half-chair conformations.
The crystal structure is stabilized by intermolecular N—H···π and C–H···π interactions (Table 1).
Experimental
A mixture of cyclohexanone (0.12 mol) and glacial acetic acid (40 ml) was heated and then redistilled phenylhydrazine (0.1 mol) was added dropwise for 30 min. The mixture was refluxed on a water bath for a further period of 30 min. The reaction mixture was poured into ice-cold water with continuous stirring and brown-coloured solid separated out. It was filtered, washed repeatedly with water and recrystallized from methanol in the presence of a little decolorized carbon to give the title compound. Single crystals suitable for X-ray diffraction were obtained by slow evaporation of a methanol solution.
Refinement
Atoms C10 and C11 of the cyclohexene ring are disordered over two positions (C10A/C10B and C11A/C11B) with refined occupancies of 0.591 (10) and 0.409 (10). The corresponding bond distances involving the disordered atoms were restrained to be equal. H atoms were positioned geometrically (C—H = 0.93Å and N—H = 0.86%A) and were treated as riding on their parent atoms, with Uiso(H)=1.2Ueq(C,N). In the absence of significant anomalous dispersion effects, Friedel pairs were merged before the final refinement.
Figures
Fig. 1.
The molecular structure of title compound, showing 30% probability displacement ellipsoids. Both disorder components are shown.
Crystal data
| C12H13N | F000 = 368 |
| Mr = 171.23 | Dx = 1.205 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 1778 reflections |
| a = 6.1067 (4) Å | θ = 2.1–31.1º |
| b = 7.9488 (5) Å | µ = 0.07 mm−1 |
| c = 19.4512 (12) Å | T = 293 (2) K |
| V = 944.18 (10) Å3 | Block, colourless |
| Z = 4 | 0.26 × 0.15 × 0.15 mm |
Data collection
| Bruker Kappa APEXII area-detector diffractometer | 1323 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.036 |
| Monochromator: graphite | θmax = 31.1º |
| T = 293(2) K | θmin = 2.1º |
| ω and φ scans | h = −8→8 |
| Absorption correction: none | k = −11→11 |
| 13269 measured reflections | l = −28→28 |
| 1777 independent reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.048 | H-atom parameters constrained |
| wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0603P)2 + 0.0496P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.07 | (Δ/σ)max = 0.001 |
| 1777 reflections | Δρmax = 0.14 e Å−3 |
| 137 parameters | Δρmin = −0.20 e Å−3 |
| 15 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| N1 | 0.7448 (2) | 0.5987 (2) | 0.95685 (8) | 0.0547 (4) | |
| H1A | 0.8656 | 0.6513 | 0.9495 | 0.066* | |
| C1 | 0.3210 (3) | 0.4486 (2) | 1.06567 (10) | 0.0557 (5) | |
| H1 | 0.1945 | 0.3846 | 1.0604 | 0.067* | |
| C2 | 0.3803 (4) | 0.5087 (3) | 1.12920 (10) | 0.0634 (5) | |
| H2 | 0.2921 | 0.4854 | 1.1670 | 0.076* | |
| C3 | 0.5689 (4) | 0.6033 (3) | 1.13826 (10) | 0.0619 (5) | |
| H3 | 0.6046 | 0.6419 | 1.1820 | 0.074* | |
| C4 | 0.7035 (3) | 0.6410 (2) | 1.08415 (10) | 0.0568 (5) | |
| H4 | 0.8298 | 0.7045 | 1.0904 | 0.068* | |
| C5 | 0.6448 (3) | 0.5811 (2) | 1.01954 (9) | 0.0457 (4) | |
| C6 | 0.4535 (3) | 0.4849 (2) | 1.00903 (9) | 0.0429 (4) | |
| C7 | 0.4433 (3) | 0.4464 (2) | 0.93742 (8) | 0.0429 (4) | |
| C8 | 0.6210 (3) | 0.5184 (2) | 0.90741 (9) | 0.0473 (4) | |
| C9 | 0.6730 (3) | 0.5153 (3) | 0.83301 (10) | 0.0668 (6) | |
| H9A | 0.8252 | 0.4841 | 0.8267 | 0.080* | 0.591 (10) |
| H9B | 0.6521 | 0.6267 | 0.8138 | 0.080* | 0.591 (10) |
| H9C | 0.7893 | 0.4371 | 0.8240 | 0.080* | 0.409 (10) |
| H9D | 0.7193 | 0.6249 | 0.8182 | 0.080* | 0.409 (10) |
| C10A | 0.5287 (9) | 0.3918 (9) | 0.7958 (4) | 0.0674 (15) | 0.591 (10) |
| H10A | 0.5876 | 0.2795 | 0.8019 | 0.101* | 0.591 (10) |
| H10B | 0.5318 | 0.4171 | 0.7470 | 0.101* | 0.591 (10) |
| C11A | 0.2927 (8) | 0.3943 (9) | 0.8204 (2) | 0.0638 (13) | 0.591 (10) |
| H11A | 0.2083 | 0.3133 | 0.7941 | 0.096* | 0.591 (10) |
| H11B | 0.2308 | 0.5049 | 0.8122 | 0.096* | 0.591 (10) |
| C10B | 0.4709 (17) | 0.4587 (13) | 0.7953 (5) | 0.076 (2) | 0.409 (10) |
| H10C | 0.3699 | 0.5527 | 0.7924 | 0.114* | 0.409 (10) |
| H10D | 0.5117 | 0.4282 | 0.7487 | 0.114* | 0.409 (10) |
| C11B | 0.3543 (15) | 0.3125 (11) | 0.8276 (3) | 0.0651 (19) | 0.409 (10) |
| H11C | 0.2313 | 0.2806 | 0.7989 | 0.098* | 0.409 (10) |
| H11D | 0.4534 | 0.2173 | 0.8300 | 0.098* | 0.409 (10) |
| C12 | 0.2741 (3) | 0.3519 (3) | 0.89757 (10) | 0.0579 (5) | |
| H12A | 0.1293 | 0.3817 | 0.9141 | 0.069* | 0.591 (10) |
| H12B | 0.2943 | 0.2320 | 0.9043 | 0.069* | 0.591 (10) |
| H12C | 0.1428 | 0.4179 | 0.8941 | 0.069* | 0.409 (10) |
| H12D | 0.2390 | 0.2494 | 0.9212 | 0.069* | 0.409 (10) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0455 (8) | 0.0620 (9) | 0.0565 (9) | −0.0161 (8) | 0.0044 (7) | 0.0019 (7) |
| C1 | 0.0518 (10) | 0.0556 (11) | 0.0597 (11) | −0.0079 (9) | 0.0078 (9) | 0.0039 (9) |
| C2 | 0.0707 (12) | 0.0693 (12) | 0.0502 (10) | 0.0015 (12) | 0.0120 (9) | 0.0040 (9) |
| C3 | 0.0752 (13) | 0.0599 (11) | 0.0507 (11) | 0.0054 (11) | −0.0054 (10) | −0.0048 (9) |
| C4 | 0.0577 (11) | 0.0495 (10) | 0.0631 (12) | −0.0038 (9) | −0.0095 (10) | −0.0022 (9) |
| C5 | 0.0447 (8) | 0.0402 (8) | 0.0522 (9) | −0.0020 (7) | −0.0005 (7) | 0.0042 (7) |
| C6 | 0.0425 (8) | 0.0374 (7) | 0.0488 (8) | 0.0012 (7) | 0.0007 (7) | 0.0036 (7) |
| C7 | 0.0422 (8) | 0.0379 (8) | 0.0487 (9) | 0.0013 (7) | −0.0007 (7) | 0.0010 (7) |
| C8 | 0.0440 (8) | 0.0468 (9) | 0.0511 (9) | 0.0018 (8) | 0.0023 (7) | 0.0017 (8) |
| C9 | 0.0601 (11) | 0.0876 (15) | 0.0526 (10) | −0.0017 (12) | 0.0084 (9) | 0.0054 (11) |
| C10A | 0.061 (3) | 0.082 (4) | 0.059 (2) | 0.010 (3) | 0.004 (2) | −0.007 (3) |
| C11A | 0.057 (2) | 0.076 (3) | 0.058 (2) | 0.003 (2) | −0.0071 (18) | −0.010 (2) |
| C10B | 0.084 (6) | 0.097 (6) | 0.046 (3) | 0.009 (5) | −0.008 (4) | −0.005 (4) |
| C11B | 0.071 (4) | 0.067 (4) | 0.057 (3) | 0.003 (4) | −0.011 (3) | −0.018 (3) |
| C12 | 0.0515 (10) | 0.0590 (11) | 0.0632 (11) | −0.0084 (9) | −0.0038 (9) | −0.0028 (9) |
Geometric parameters (Å, °)
| N1—C5 | 1.371 (2) | C9—H9B | 0.97 |
| N1—C8 | 1.379 (2) | C9—H9C | 0.96 |
| N1—H1A | 0.86 | C9—H9D | 0.96 |
| C1—C2 | 1.374 (3) | C10A—C11A | 1.519 (7) |
| C1—C6 | 1.397 (2) | C10A—H10A | 0.97 |
| C1—H1 | 0.93 | C10A—H10B | 0.97 |
| C2—C3 | 1.387 (3) | C11A—C12 | 1.542 (5) |
| C2—H2 | 0.93 | C11A—H11A | 0.97 |
| C3—C4 | 1.369 (3) | C11A—H11B | 0.97 |
| C3—H3 | 0.93 | C10B—C11B | 1.501 (10) |
| C4—C5 | 1.391 (3) | C10B—H10C | 0.97 |
| C4—H4 | 0.93 | C10B—H10D | 0.97 |
| C5—C6 | 1.411 (2) | C11B—C12 | 1.480 (6) |
| C6—C7 | 1.427 (2) | C11B—H11C | 0.97 |
| C7—C8 | 1.359 (2) | C11B—H11D | 0.97 |
| C7—C12 | 1.494 (2) | C12—H12A | 0.97 |
| C8—C9 | 1.482 (3) | C12—H12B | 0.97 |
| C9—C10B | 1.505 (9) | C12—H12C | 0.96 |
| C9—C10A | 1.505 (6) | C12—H12D | 0.96 |
| C9—H9A | 0.97 | ||
| C5—N1—C8 | 109.19 (14) | H9C—C9—H9D | 108.3 |
| C5—N1—H1A | 125.4 | C9—C10A—C11A | 113.3 (5) |
| C8—N1—H1A | 125.4 | C9—C10A—H10A | 108.9 |
| C2—C1—C6 | 118.99 (18) | C11A—C10A—H10A | 108.9 |
| C2—C1—H1 | 120.5 | C9—C10A—H10B | 108.9 |
| C6—C1—H1 | 120.5 | C11A—C10A—H10B | 108.9 |
| C1—C2—C3 | 121.49 (19) | H10A—C10A—H10B | 107.7 |
| C1—C2—H2 | 119.3 | C10A—C11A—C12 | 112.0 (5) |
| C3—C2—H2 | 119.3 | C10A—C11A—H11A | 109.2 |
| C4—C3—C2 | 121.30 (18) | C12—C11A—H11A | 109.2 |
| C4—C3—H3 | 119.3 | C10A—C11A—H11B | 109.2 |
| C2—C3—H3 | 119.3 | C12—C11A—H11B | 109.2 |
| C3—C4—C5 | 117.72 (18) | H11A—C11A—H11B | 107.9 |
| C3—C4—H4 | 121.1 | C11B—C10B—C9 | 114.6 (7) |
| C5—C4—H4 | 121.1 | C11B—C10B—H10C | 108.6 |
| N1—C5—C4 | 130.84 (17) | C9—C10B—H10C | 108.6 |
| N1—C5—C6 | 107.17 (15) | C11B—C10B—H10D | 108.6 |
| C4—C5—C6 | 121.99 (17) | C9—C10B—H10D | 108.6 |
| C1—C6—C5 | 118.50 (16) | H10C—C10B—H10D | 107.6 |
| C1—C6—C7 | 134.42 (16) | C12—C11B—C10B | 112.2 (7) |
| C5—C6—C7 | 107.08 (15) | C12—C11B—H11C | 109.2 |
| C8—C7—C6 | 107.10 (14) | C10B—C11B—H11C | 109.2 |
| C8—C7—C12 | 122.77 (16) | C12—C11B—H11D | 109.2 |
| C6—C7—C12 | 130.10 (15) | C10B—C11B—H11D | 109.2 |
| C7—C8—N1 | 109.45 (15) | H11C—C11B—H11D | 107.9 |
| C7—C8—C9 | 125.70 (17) | C11B—C12—C7 | 110.8 (3) |
| N1—C8—C9 | 124.85 (17) | C7—C12—C11A | 110.1 (2) |
| C8—C9—C10B | 107.8 (4) | C11B—C12—H12A | 131.1 |
| C8—C9—C10A | 110.8 (3) | C7—C12—H12A | 109.6 |
| C8—C9—H9A | 109.5 | C11A—C12—H12A | 109.6 |
| C10B—C9—H9A | 130.4 | C11B—C12—H12B | 82.7 |
| C10A—C9—H9A | 109.5 | C7—C12—H12B | 109.6 |
| C8—C9—H9B | 109.5 | C11A—C12—H12B | 109.6 |
| C10B—C9—H9B | 88.7 | H12A—C12—H12B | 108.1 |
| C10A—C9—H9B | 109.5 | C11B—C12—H12C | 109.1 |
| H9A—C9—H9B | 108.1 | C7—C12—H12C | 109.8 |
| C8—C9—H9C | 110.3 | C11A—C12—H12C | 82.8 |
| C10B—C9—H9C | 109.0 | H12B—C12—H12C | 130.7 |
| C10A—C9—H9C | 85.6 | C11B—C12—H12D | 109.5 |
| H9B—C9—H9C | 128.2 | C7—C12—H12D | 109.4 |
| C8—C9—H9D | 109.9 | C11A—C12—H12D | 131.9 |
| C10B—C9—H9D | 111.5 | H12A—C12—H12D | 81.1 |
| C10A—C9—H9D | 128.3 | H12C—C12—H12D | 108.1 |
| H9A—C9—H9D | 84.9 | ||
| C6—C1—C2—C3 | −0.4 (3) | C5—N1—C8—C7 | −1.0 (2) |
| C1—C2—C3—C4 | 0.1 (3) | C5—N1—C8—C9 | 177.78 (18) |
| C2—C3—C4—C5 | 0.0 (3) | C7—C8—C9—C10B | 14.1 (5) |
| C8—N1—C5—C4 | −178.92 (19) | N1—C8—C9—C10B | −164.5 (5) |
| C8—N1—C5—C6 | 0.7 (2) | C7—C8—C9—C10A | −11.7 (4) |
| C3—C4—C5—N1 | 179.77 (19) | N1—C8—C9—C10A | 169.7 (3) |
| C3—C4—C5—C6 | 0.2 (3) | C8—C9—C10A—C11A | 40.6 (8) |
| C2—C1—C6—C5 | 0.6 (3) | C10B—C9—C10A—C11A | −46.8 (11) |
| C2—C1—C6—C7 | −179.34 (19) | C9—C10A—C11A—C12 | −59.6 (9) |
| N1—C5—C6—C1 | 179.87 (15) | C8—C9—C10B—C11B | −43.8 (11) |
| C4—C5—C6—C1 | −0.4 (3) | C10A—C9—C10B—C11B | 57.5 (12) |
| N1—C5—C6—C7 | −0.20 (18) | C9—C10B—C11B—C12 | 61.8 (14) |
| C4—C5—C6—C7 | 179.48 (17) | C10B—C11B—C12—C7 | −42.9 (10) |
| C1—C6—C7—C8 | 179.52 (19) | C10B—C11B—C12—C11A | 51.4 (8) |
| C5—C6—C7—C8 | −0.39 (18) | C8—C7—C12—C11B | 14.2 (5) |
| C1—C6—C7—C12 | 1.6 (3) | C6—C7—C12—C11B | −168.1 (5) |
| C5—C6—C7—C12 | −178.35 (17) | C8—C7—C12—C11A | −17.0 (4) |
| C6—C7—C8—N1 | 0.84 (19) | C6—C7—C12—C11A | 160.7 (3) |
| C12—C7—C8—N1 | 178.98 (16) | C10A—C11A—C12—C11B | −51.7 (7) |
| C6—C7—C8—C9 | −177.92 (18) | C10A—C11A—C12—C7 | 45.1 (7) |
| C12—C7—C8—C9 | 0.2 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···Cg2i | 0.86 | 2.62 | 3.327 (1) | 140 |
| C4—H4···Cg1i | 0.93 | 2.86 | 3.645 (1) | 143 |
| C12—H12B···Cg2ii | 0.97 | 2.83 | 3.577 (2) | 135 |
| C12—H12D···Cg2ii | 0.96 | 2.72 | 3.577 (2) | 149 |
Symmetry codes: (i) x+1/2, −y+3/2, −z+2; (ii) x−1/2, −y+1/2, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI2708).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038713/ci2708sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038713/ci2708Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

