Abstract
The title thiosemicarbazone derivative, C12H18N4S, features intramolecular N—H⋯N and C—H⋯S hydrogen bonds which generate S(5) ring motifs. The dihedral angle between the benzene ring and the thiourea unit is 6.30 (6)° indicating planarity in the molecule. Intermolecular N—H⋯S hydrogen bonds generate dimers with an R 2 2(8) ring motif. The methyl group of the N-ethyl residue is disordered and was refined with site occupancies of 0.521 (5) and 0.479 (5).
Related literature
For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures and applications see: Beraldo et al. (2001 ▶); Kayed et al. (2008 ▶); Valdes-Martinez et al. (1990 ▶).
Experimental
Crystal data
C12H18N4S
M r = 250.36
Monoclinic,
a = 9.3687 (2) Å
b = 14.1872 (3) Å
c = 10.2318 (2) Å
β = 96.699 (1)°
V = 1350.68 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.23 mm−1
T = 100 (1) K
0.59 × 0.36 × 0.22 mm
Data collection
Bruker SMART APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.879, T max = 0.953
30229 measured reflections
6825 independent reflections
5566 reflections with I > 2σ(I)
R int = 0.036
Refinement
R[F 2 > 2σ(F 2)] = 0.041
wR(F 2) = 0.119
S = 1.04
6825 reflections
176 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.74 e Å−3
Δρmin = −0.39 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037148/tk2323sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037148/tk2323Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H1N3⋯S1i | 0.891 (15) | 2.613 (15) | 3.4910 (7) | 168.8 (12) |
| N4—H1N4⋯N2 | 0.885 (14) | 2.193 (14) | 2.6140 (10) | 108.7 (11) |
| C9—H9B⋯S1 | 0.96 | 2.78 | 3.1225 (9) | 102 |
Symmetry code: (i)
.
Acknowledgments
We thank the Malysian Government and Universiti Sains Malaysia for Science Fund grant No. 1001/229/PKIMIA/811055
supplementary crystallographic information
Comment
Thiosemicarbazones have been a subject of extensive investigation (Kayed et al., 2008) because of their ability to coordinate metal ions and their wide range of chemical and biological activities (Valdes-Martinez et al., 1990 & Beraldo et al., 2001). We present herein the X-ray structure of the title thiosemicarbazone derivative, (I).
Compound (I), Fig. I, displays bond lengths and angles comparable to those in related structures (Beraldo et al., 2001; Kayed et al., 2008; Valdes-Martinez et al., 1990). Intramolecular N—H···N and C—H···S contacts generate S(5) ring motifs (Bernstein et al. 1995), Table 1. The dihedral angle between the phenyl ring and the thiourea unit is 6.30 (6)° which indicates the molecule is almost planar. Intermolecular N—H···S hydrogen bonds generate R22(8) ring motifs to link molecules into dimers, Fig. 2. The methyl group of the N-ethyl residue is disordered and was refined with site occupancies of 0.521 (5)/0.479 (5).
Experimental
To 4-ethyl-3-thiosemicarbazide (ca. 0.119 g, 1 mmol) dissolved in ethanol (10 ml) was added dropwise an ethanol solution (5 ml) of 4-dimethylaminobenzaldehyde (0.149 g, 1 mmol) with continuous stirring. The solution was heated on a water bath for few minutes until the solution became clear. After cooling to room temperature, yellow crystals of (I) appeared.
Refinement
The N-bound H atoms were located from a difference Fourier map and refined freely. The remaining H were placed in their calculated positions in the riding model approximation with C–H 0.93–0.96 Å, and with U(H) set to 1.2–1.5 times Ueq(C). The presence of large peaks in the difference Fourier map near to the methyl group of (I) was suspected to be due to positional disorder of this fragment. The refined ratio of the site occupancy factors for the disorder parts were calculated to be 0.521 (5)/0.479 (5).
Figures
Fig. 1.
The molecular structure of (I), showing 50% probability displacement ellipsoids and the atomic numbering. The intramolecular contacts are shown as dashed lines.
Fig. 2.
Unit cell contents for the major component of (I), viewed down the b-axis showing dimers linked by R22(8) ring motifs. Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
| C12H18N4S | F000 = 536 |
| Mr = 250.36 | Dx = 1.231 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 9949 reflections |
| a = 9.3687 (2) Å | θ = 2.5–39.5º |
| b = 14.1872 (3) Å | µ = 0.23 mm−1 |
| c = 10.2318 (2) Å | T = 100 (1) K |
| β = 96.699 (1)º | Block, yellow |
| V = 1350.68 (5) Å3 | 0.59 × 0.36 × 0.22 mm |
| Z = 4 |
Data collection
| Bruker SMART APEXII CCD area-detector diffractometer | 6825 independent reflections |
| Radiation source: fine-focus sealed tube | 5566 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.036 |
| T = 100(1) K | θmax = 37.0º |
| φ and ω scans | θmin = 2.2º |
| Absorption correction: multi-scan(SADABS; Bruker, 2005) | h = −15→13 |
| Tmin = 0.879, Tmax = 0.953 | k = −24→20 |
| 30229 measured reflections | l = −15→17 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.119 | w = 1/[σ2(Fo2) + (0.0651P)2 + 0.2126P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max = 0.001 |
| 6825 reflections | Δρmax = 0.74 e Å−3 |
| 176 parameters | Δρmin = −0.39 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| S1 | 0.16244 (2) | 0.114147 (15) | −0.039117 (18) | 0.01984 (6) | |
| N1 | −0.30894 (9) | 0.10562 (6) | 0.82869 (8) | 0.02457 (15) | |
| N2 | −0.01025 (7) | 0.10572 (5) | 0.29168 (6) | 0.01690 (12) | |
| N3 | 0.02454 (7) | 0.08428 (5) | 0.16770 (6) | 0.01731 (12) | |
| N4 | 0.18487 (7) | 0.20579 (5) | 0.19197 (7) | 0.01837 (12) | |
| C1 | −0.09174 (8) | 0.13272 (6) | 0.55310 (7) | 0.01760 (13) | |
| H1A | −0.0138 | 0.1680 | 0.5323 | 0.021* | |
| C2 | −0.14161 (8) | 0.14561 (6) | 0.67363 (7) | 0.01834 (13) | |
| H2A | −0.0977 | 0.1900 | 0.7319 | 0.022* | |
| C3 | −0.25861 (8) | 0.09230 (6) | 0.70986 (7) | 0.01732 (13) | |
| C4 | −0.32165 (9) | 0.02550 (6) | 0.61854 (8) | 0.01997 (14) | |
| H4A | −0.3979 | −0.0113 | 0.6396 | 0.024* | |
| C5 | −0.27073 (9) | 0.01429 (6) | 0.49756 (8) | 0.01935 (14) | |
| H5A | −0.3142 | −0.0300 | 0.4388 | 0.023* | |
| C6 | −0.15624 (8) | 0.06743 (5) | 0.46132 (7) | 0.01601 (12) | |
| C7 | −0.10836 (8) | 0.05380 (6) | 0.33282 (7) | 0.01745 (13) | |
| H7A | −0.1498 | 0.0062 | 0.2786 | 0.021* | |
| C8 | 0.12430 (8) | 0.13664 (6) | 0.11598 (7) | 0.01551 (12) | |
| C9 | 0.29288 (10) | 0.27026 (6) | 0.15428 (9) | 0.02484 (16) | |
| H9A | 0.2867 | 0.3279 | 0.2024 | 0.030* | 0.521 (5) |
| H9B | 0.2702 | 0.2848 | 0.0626 | 0.030* | 0.521 (5) |
| H9C | 0.2877 | 0.3291 | 0.1999 | 0.030* | 0.479 (5) |
| H9D | 0.2767 | 0.2823 | 0.0614 | 0.030* | 0.479 (5) |
| C10A | 0.4427 (11) | 0.2356 (8) | 0.1674 (8) | 0.0361 (12) | 0.521 (5) |
| H10A | 0.5045 | 0.2841 | 0.1403 | 0.054* | 0.521 (5) |
| H10B | 0.4486 | 0.1810 | 0.1128 | 0.054* | 0.521 (5) |
| H10C | 0.4724 | 0.2192 | 0.2575 | 0.054* | 0.521 (5) |
| C10B | 0.4457 (14) | 0.2268 (10) | 0.1992 (9) | 0.0394 (15) | 0.479 (5) |
| H10D | 0.4558 | 0.2160 | 0.2925 | 0.059* | 0.479 (5) |
| H10E | 0.5188 | 0.2698 | 0.1782 | 0.059* | 0.479 (5) |
| H10F | 0.4554 | 0.1681 | 0.1544 | 0.059* | 0.479 (5) |
| C11 | −0.43497 (11) | 0.05588 (7) | 0.86103 (10) | 0.02942 (19) | |
| H11A | −0.5107 | 0.0619 | 0.7898 | 0.044* | |
| H11B | −0.4657 | 0.0823 | 0.9395 | 0.044* | |
| H11C | −0.4121 | −0.0096 | 0.8753 | 0.044* | |
| C12 | −0.24779 (10) | 0.17816 (8) | 0.91858 (9) | 0.02932 (19) | |
| H12A | −0.1452 | 0.1710 | 0.9325 | 0.044* | |
| H12B | −0.2864 | 0.1722 | 1.0011 | 0.044* | |
| H12C | −0.2713 | 0.2392 | 0.8815 | 0.044* | |
| H1N4 | 0.1570 (14) | 0.2111 (10) | 0.2711 (14) | 0.032 (3)* | |
| H1N3 | −0.0171 (15) | 0.0353 (11) | 0.1243 (14) | 0.035 (4)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.02294 (10) | 0.02210 (11) | 0.01529 (9) | −0.00401 (7) | 0.00569 (6) | −0.00261 (6) |
| N1 | 0.0315 (4) | 0.0243 (4) | 0.0202 (3) | −0.0016 (3) | 0.0121 (3) | −0.0011 (2) |
| N2 | 0.0198 (3) | 0.0176 (3) | 0.0137 (2) | −0.0005 (2) | 0.0038 (2) | −0.0006 (2) |
| N3 | 0.0206 (3) | 0.0178 (3) | 0.0141 (2) | −0.0036 (2) | 0.0043 (2) | −0.0018 (2) |
| N4 | 0.0212 (3) | 0.0178 (3) | 0.0166 (3) | −0.0039 (2) | 0.0044 (2) | −0.0022 (2) |
| C1 | 0.0179 (3) | 0.0185 (3) | 0.0166 (3) | −0.0026 (2) | 0.0028 (2) | −0.0005 (2) |
| C2 | 0.0199 (3) | 0.0199 (3) | 0.0152 (3) | −0.0015 (3) | 0.0024 (2) | −0.0015 (2) |
| C3 | 0.0205 (3) | 0.0157 (3) | 0.0166 (3) | 0.0026 (2) | 0.0057 (2) | 0.0018 (2) |
| C4 | 0.0215 (3) | 0.0171 (3) | 0.0226 (3) | −0.0025 (3) | 0.0082 (3) | −0.0007 (3) |
| C5 | 0.0213 (3) | 0.0167 (3) | 0.0208 (3) | −0.0040 (2) | 0.0060 (2) | −0.0031 (2) |
| C6 | 0.0181 (3) | 0.0149 (3) | 0.0153 (3) | −0.0008 (2) | 0.0032 (2) | −0.0001 (2) |
| C7 | 0.0199 (3) | 0.0168 (3) | 0.0160 (3) | −0.0013 (2) | 0.0034 (2) | −0.0013 (2) |
| C8 | 0.0162 (3) | 0.0156 (3) | 0.0148 (3) | 0.0000 (2) | 0.0017 (2) | 0.0010 (2) |
| C9 | 0.0294 (4) | 0.0199 (4) | 0.0269 (4) | −0.0092 (3) | 0.0107 (3) | −0.0057 (3) |
| C10A | 0.0211 (12) | 0.032 (2) | 0.057 (3) | −0.0087 (13) | 0.011 (2) | −0.015 (2) |
| C10B | 0.0265 (14) | 0.036 (2) | 0.057 (4) | −0.0113 (14) | 0.009 (3) | −0.011 (3) |
| C11 | 0.0374 (5) | 0.0252 (4) | 0.0291 (4) | −0.0005 (4) | 0.0190 (4) | 0.0033 (3) |
| C12 | 0.0275 (4) | 0.0409 (6) | 0.0199 (3) | 0.0028 (4) | 0.0037 (3) | −0.0083 (3) |
Geometric parameters (Å, °)
| S1—C8 | 1.6971 (7) | C6—C7 | 1.4508 (10) |
| N1—C3 | 1.3675 (10) | C7—H7A | 0.9300 |
| N1—C11 | 1.4466 (12) | C9—C10A | 1.479 (10) |
| N1—C12 | 1.4528 (13) | C9—C10B | 1.577 (13) |
| N2—C7 | 1.2864 (10) | C9—H9A | 0.9600 |
| N2—N3 | 1.3800 (9) | C9—H9B | 0.9600 |
| N3—C8 | 1.3494 (10) | C9—H9C | 0.9600 |
| N3—H1N3 | 0.890 (15) | C9—H9D | 0.9600 |
| N4—C8 | 1.3365 (10) | C10A—H10A | 0.9600 |
| N4—C9 | 1.4492 (11) | C10A—H10B | 0.9600 |
| N4—H1N4 | 0.883 (14) | C10A—H10C | 0.9600 |
| C1—C2 | 1.3810 (10) | C10B—H10D | 0.9600 |
| C1—C6 | 1.4045 (11) | C10B—H10E | 0.9600 |
| C1—H1A | 0.9300 | C10B—H10F | 0.9600 |
| C2—C3 | 1.4162 (11) | C11—H11A | 0.9600 |
| C2—H2A | 0.9300 | C11—H11B | 0.9600 |
| C3—C4 | 1.4111 (12) | C11—H11C | 0.9600 |
| C4—C5 | 1.3867 (11) | C12—H12A | 0.9600 |
| C4—H4A | 0.9300 | C12—H12B | 0.9600 |
| C5—C6 | 1.3961 (11) | C12—H12C | 0.9600 |
| C5—H5A | 0.9300 | ||
| C3—N1—C11 | 120.75 (8) | C10A—C9—H9A | 110.5 |
| C3—N1—C12 | 120.62 (8) | C10B—C9—H9A | 106.9 |
| C11—N1—C12 | 118.22 (7) | N4—C9—H9B | 108.3 |
| C7—N2—N3 | 115.40 (7) | C10A—C9—H9B | 105.1 |
| C8—N3—N2 | 119.20 (7) | C10B—C9—H9B | 117.3 |
| C8—N3—H1N3 | 121.2 (9) | H9A—C9—H9B | 107.4 |
| N2—N3—H1N3 | 119.6 (9) | N4—C9—H9C | 110.0 |
| C8—N4—C9 | 124.80 (7) | C10A—C9—H9C | 110.3 |
| C8—N4—H1N4 | 116.4 (9) | C10B—C9—H9C | 107.1 |
| C9—N4—H1N4 | 118.7 (9) | H9B—C9—H9C | 105.7 |
| C2—C1—C6 | 121.36 (7) | N4—C9—H9D | 110.0 |
| C2—C1—H1A | 119.3 | C10A—C9—H9D | 100.8 |
| C6—C1—H1A | 119.3 | C10B—C9—H9D | 113.0 |
| C1—C2—C3 | 121.05 (7) | H9A—C9—H9D | 110.1 |
| C1—C2—H2A | 119.5 | H9C—C9—H9D | 108.4 |
| C3—C2—H2A | 119.5 | C9—C10A—H10A | 109.5 |
| N1—C3—C4 | 121.35 (7) | C9—C10A—H10B | 109.5 |
| N1—C3—C2 | 121.11 (7) | C9—C10A—H10C | 109.5 |
| C4—C3—C2 | 117.53 (7) | C9—C10B—H10D | 109.5 |
| C5—C4—C3 | 120.47 (7) | C9—C10B—H10E | 109.5 |
| C5—C4—H4A | 119.8 | H10D—C10B—H10E | 109.5 |
| C3—C4—H4A | 119.8 | C9—C10B—H10F | 109.5 |
| C4—C5—C6 | 122.02 (7) | H10D—C10B—H10F | 109.5 |
| C4—C5—H5A | 119.0 | H10E—C10B—H10F | 109.5 |
| C6—C5—H5A | 119.0 | N1—C11—H11A | 109.5 |
| C5—C6—C1 | 117.54 (7) | N1—C11—H11B | 109.5 |
| C5—C6—C7 | 119.81 (7) | H11A—C11—H11B | 109.5 |
| C1—C6—C7 | 122.65 (7) | N1—C11—H11C | 109.5 |
| N2—C7—C6 | 121.90 (7) | H11A—C11—H11C | 109.5 |
| N2—C7—H7A | 119.1 | H11B—C11—H11C | 109.5 |
| C6—C7—H7A | 119.1 | N1—C12—H12A | 109.5 |
| N4—C8—N3 | 116.26 (6) | N1—C12—H12B | 109.5 |
| N4—C8—S1 | 124.10 (6) | H12A—C12—H12B | 109.5 |
| N3—C8—S1 | 119.62 (6) | N1—C12—H12C | 109.5 |
| N4—C9—C10A | 116.8 (4) | H12A—C12—H12C | 109.5 |
| N4—C9—C10B | 108.3 (4) | H12B—C12—H12C | 109.5 |
| N4—C9—H9A | 108.4 | ||
| C7—N2—N3—C8 | 178.60 (7) | C4—C5—C6—C7 | −179.19 (8) |
| C6—C1—C2—C3 | 0.93 (12) | C2—C1—C6—C5 | −1.47 (12) |
| C11—N1—C3—C4 | −4.17 (13) | C2—C1—C6—C7 | 178.59 (8) |
| C12—N1—C3—C4 | −176.68 (8) | N3—N2—C7—C6 | 179.78 (7) |
| C11—N1—C3—C2 | 175.45 (8) | C5—C6—C7—N2 | 174.99 (8) |
| C12—N1—C3—C2 | 2.93 (13) | C1—C6—C7—N2 | −5.08 (12) |
| C1—C2—C3—N1 | −179.39 (8) | C9—N4—C8—N3 | −179.39 (8) |
| C1—C2—C3—C4 | 0.24 (12) | C9—N4—C8—S1 | −1.06 (12) |
| N1—C3—C4—C5 | 178.80 (8) | N2—N3—C8—N4 | 1.21 (11) |
| C2—C3—C4—C5 | −0.82 (12) | N2—N3—C8—S1 | −177.20 (5) |
| C3—C4—C5—C6 | 0.26 (13) | C8—N4—C9—C10A | −81.0 (4) |
| C4—C5—C6—C1 | 0.88 (12) | C8—N4—C9—C10B | −90.9 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H1N3···S1i | 0.891 (15) | 2.613 (15) | 3.4910 (7) | 168.8 (12) |
| N4—H1N4···N2 | 0.885 (14) | 2.193 (14) | 2.6140 (10) | 108.7 (11) |
| C9—H9B···S1 | 0.96 | 2.78 | 3.1225 (9) | 102 |
Symmetry codes: (i) −x, −y, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2323).
References
- Beraldo, H., Lima, R., Teixeira, L. R., Moura, A. A. & West, D. X. (2001). J. Mol. Struct.559, 99–106.
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl.34, 1555–1573.
- Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Kayed, S. F., Farina, Y., Baba, I. & Simpson, J. (2008). Acta Cryst. E64, o824–o825. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
- Valdes-Martinez, J., Toscano, R. A., Salcedo, R., Cea-Olivarres, R. & Melendez, A. (1990). Monatsh. Chem.121, 641–647.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037148/tk2323sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037148/tk2323Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


