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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jan 23;64(Pt 2):o499. doi: 10.1107/S1600536808001888

(E)-2-Meth­oxy-6-[(5-methyl­isoxazol-3-yl)imino­meth­yl]phenol

Ren-Gao Zhao a,*, Jie Lu b, Ji-Kun Li a
PMCID: PMC2960214  PMID: 21201520

Abstract

In the title mol­ecule, C12H12N2O3, the benzene and isoxazole rings form a dihedral angle of 5.9 (6)°. The hydr­oxy group is involved in an intra­molecular O—H⋯N hydrogen bond [O⋯N = 2.616 (5) Å], resulting in approximate planarity of the mol­ecular skeleton. In the crystal structure, mol­ecules related by translation along the c axis are stacked into columns, the shortest inter­molecular C⋯C distance being 3.298 (6) Å.

Related literature

For related crystal structures, see Li et al. (2007). For general background, see Garnovskii et al. (1993).graphic file with name e-64-0o499-scheme1.jpg

Experimental

Crystal data

  • C12H12N2O3

  • M r = 232.24

  • Orthorhombic, Inline graphic

  • a = 22.254 (5) Å

  • b = 10.178 (5) Å

  • c = 4.836 (2) Å

  • V = 1095.4 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 273 (2) K

  • 0.12 × 0.10 × 0.08 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.988, T max = 0.992

  • 3720 measured reflections

  • 1079 independent reflections

  • 651 reflections with I > 2σ(I)

  • R int = 0.069

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.122

  • S = 1.02

  • 1079 reflections

  • 156 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SMART; data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808001888/cv2374sup1.cif

e-64-0o499-sup1.cif (16.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001888/cv2374Isup2.hkl

e-64-0o499-Isup2.hkl (53.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯N1 0.82 1.89 2.616 (5) 147

Acknowledgments

The authors thank the Postgraduate Foundation of Taishan University for financial support (grant No. Y06-2-12).

supplementary crystallographic information

Comment

Recently, a number of Schiff-bases have been investigated in terms of their crystallography and coordination chemistry (Garnovskii et al., 1993). In continuation of our studies of Schiff-bases, we report here the synthesis and crystal structure of the title compound, (I).

In (I) (Fig. 1), the geometric parameters are in good agreement with those found in 2,4-di-tert-butyl-6-(4-chlorophenyliminomethyl)phenol (Li et al., 2007). The benzene and the isoxazole rings make a dihedral angle of 5.9 (6)°. The hydroxy group is involved in intramolecular O—H···N hydrogen bond (Table 2). In the crystal, the molecules related by translation along c axis are stacked into columns with the shortest intermolecular C···C distance of 3.298 (6) Å (Table 1), suggesting an existence of π···π interactions.

Experimental

The title compound was synthesized by the reaction of 2-hydroxy-3-methoxybenzaldehyde (0.152 g, 1 mmol) and 5-methylisoxazol-3-amine (0.098 g, 1 mmol) in ethanol solution and stirred under reflux conditions (353 K) for 6 h. When cooled to room temperature the solution was filtered and after a week orange crystals suitable for X-ray diffraction study were obtained. Yield, 0.186 g, 80%. m.p. 365–367 K.

Analysis found: C 61.98, H 5.25, N 12.04%; C12H12N2O3 requires: C 62.02, H 5.21, N 12.06%.

Refinement

The H atoms were geometrically positioned (C—H 0.93–0.96 Å, O—H = 0.82 Å) and refined in a riding-model approximation with Uiso(H) = 1.2Ueq(C-aromatic) and Uiso(H) = 1.5Ueq(C-methyl and O). Due to the absence of any significant anomalous scatterers in the molecule, the 758 Friedel pairs were merged before the final refinement.

Figures

Fig. 1.

Fig. 1.

The molecular structure showing 30% probability displacement ellipsoids and the atom-numbering scheme.

Crystal data

C12H12N2O3 F000 = 488
Mr = 232.24 Dx = 1.408 Mg m3Dm = 1.408 Mg m3Dm measured by not measured
Orthorhombic, Pna21 Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 401 reflections
a = 22.254 (5) Å θ = 2.7–18.4º
b = 10.178 (5) Å µ = 0.10 mm1
c = 4.836 (2) Å T = 273 (2) K
V = 1095.4 (8) Å3 Block, orange
Z = 4 0.12 × 0.10 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer 1079 independent reflections
Radiation source: sealed tube 651 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.069
T = 273(2) K θmax = 25.1º
φ and ω scans θmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) h = −26→12
Tmin = 0.988, Tmax = 0.992 k = −11→10
3720 measured reflections l = −5→5

Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.050   w = 1/[σ2(Fo2) + (0.052P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.122 (Δ/σ)max < 0.001
S = 1.02 Δρmax = 0.24 e Å3
1079 reflections Δρmin = −0.19 e Å3
156 parameters Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.009 (3)
Secondary atom site location: difference Fourier map

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.38927 (16) 0.1624 (3) 0.1475 (8) 0.0589 (12)
H1 0.3605 0.1711 0.0433 0.088*
O2 0.47481 (17) 0.1609 (3) 0.5178 (8) 0.0642 (12)
O3 0.19927 (17) 0.2331 (3) −0.6386 (9) 0.0630 (12)
N1 0.30586 (18) 0.2894 (4) −0.1253 (10) 0.0435 (11)
N2 0.2451 (2) 0.1937 (4) −0.4528 (11) 0.0600 (14)
C1 0.3990 (2) 0.2760 (5) 0.2836 (10) 0.0439 (14)
C2 0.4440 (2) 0.2775 (5) 0.4844 (12) 0.0493 (15)
C3 0.4554 (2) 0.3904 (5) 0.6332 (11) 0.0507 (14)
H3 0.4856 0.3913 0.7660 0.061*
C4 0.4214 (2) 0.5035 (5) 0.5842 (12) 0.0521 (15)
H4 0.4286 0.5792 0.6867 0.062*
C5 0.3773 (2) 0.5031 (5) 0.3843 (12) 0.0488 (13)
H5 0.3551 0.5790 0.3520 0.059*
C6 0.3655 (2) 0.3901 (5) 0.2295 (10) 0.0408 (13)
C7 0.5192 (3) 0.1552 (6) 0.7308 (13) 0.0709 (19)
H7A 0.5505 0.2174 0.6920 0.106*
H7B 0.5359 0.0683 0.7384 0.106*
H7C 0.5009 0.1760 0.9054 0.106*
C8 0.3197 (2) 0.3922 (5) 0.0215 (11) 0.0448 (13)
H8 0.2990 0.4702 −0.0098 0.054*
C9 0.2608 (2) 0.3021 (5) −0.3245 (11) 0.0457 (14)
C10 0.2266 (2) 0.4109 (5) −0.4155 (12) 0.0512 (15)
H10 0.2295 0.4971 −0.3536 0.061*
C11 0.1892 (2) 0.3643 (5) −0.6087 (11) 0.0464 (14)
C12 0.1426 (2) 0.4195 (6) −0.7923 (12) 0.0658 (18)
H12A 0.1372 0.3628 −0.9489 0.099*
H12B 0.1548 0.5050 −0.8544 0.099*
H12C 0.1054 0.4266 −0.6928 0.099*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.069 (3) 0.040 (2) 0.068 (3) 0.0036 (19) −0.016 (2) −0.009 (2)
O2 0.068 (3) 0.056 (2) 0.069 (3) 0.016 (2) −0.019 (2) −0.004 (2)
O3 0.070 (3) 0.049 (2) 0.070 (3) −0.006 (2) −0.013 (2) −0.007 (2)
N1 0.045 (3) 0.036 (2) 0.049 (2) −0.002 (2) −0.002 (2) −0.003 (2)
N2 0.068 (3) 0.041 (3) 0.071 (3) −0.009 (2) −0.027 (3) 0.002 (3)
C1 0.046 (3) 0.041 (3) 0.045 (3) −0.009 (3) −0.004 (3) 0.000 (3)
C2 0.049 (4) 0.044 (3) 0.056 (4) 0.003 (3) 0.007 (3) −0.001 (3)
C3 0.048 (3) 0.055 (3) 0.049 (3) −0.003 (3) −0.002 (3) −0.005 (3)
C4 0.060 (4) 0.044 (3) 0.052 (3) −0.009 (3) 0.006 (3) −0.002 (3)
C5 0.056 (3) 0.036 (3) 0.055 (3) −0.001 (3) 0.000 (4) −0.004 (3)
C6 0.041 (3) 0.034 (3) 0.047 (3) 0.002 (3) 0.003 (3) 0.001 (2)
C7 0.069 (4) 0.078 (4) 0.065 (4) 0.027 (3) −0.011 (4) −0.002 (4)
C8 0.042 (3) 0.038 (3) 0.055 (3) 0.004 (3) 0.004 (3) 0.000 (3)
C9 0.050 (4) 0.038 (3) 0.049 (3) −0.007 (3) 0.008 (3) −0.003 (3)
C10 0.056 (4) 0.039 (3) 0.059 (4) 0.007 (3) −0.003 (3) −0.007 (3)
C11 0.047 (4) 0.045 (3) 0.048 (3) −0.001 (3) 0.007 (3) −0.006 (3)
C12 0.064 (4) 0.073 (4) 0.061 (4) 0.008 (3) −0.011 (4) −0.005 (4)

Geometric parameters (Å, °)

O1—C1 1.348 (5) C4—H4 0.9300
O1—H1 0.8200 C5—C6 1.397 (7)
O2—C2 1.379 (6) C5—H5 0.9300
O2—C7 1.428 (6) C6—C8 1.433 (7)
O3—C11 1.362 (6) C7—H7A 0.9600
O3—N2 1.417 (6) C7—H7B 0.9600
N1—C8 1.301 (6) C7—H7C 0.9600
N1—C9 1.397 (7) C8—H8 0.9300
N2—C9 1.313 (5) C9—C10 1.413 (6)
C1—C2 1.395 (7) C10—C11 1.338 (7)
C1—C6 1.405 (7) C10—H10 0.9300
C2—C3 1.379 (7) C11—C12 1.477 (7)
C3—C4 1.397 (7) C12—H12A 0.9600
C3—H3 0.9300 C12—H12B 0.9600
C4—C5 1.377 (7) C12—H12C 0.9600
C4···C8i 3.298 (6) C6···C9i 3.299 (6)
C1—O1—H1 109.5 O2—C7—H7B 109.5
C2—O2—C7 117.5 (4) H7A—C7—H7B 109.5
C11—O3—N2 109.2 (4) O2—C7—H7C 109.5
C8—N1—C9 118.2 (4) H7A—C7—H7C 109.5
C9—N2—O3 104.7 (4) H7B—C7—H7C 109.5
O1—C1—C2 117.7 (5) N1—C8—C6 122.6 (5)
O1—C1—C6 122.2 (5) N1—C8—H8 118.7
C2—C1—C6 120.1 (5) C6—C8—H8 118.7
O2—C2—C3 124.4 (5) N2—C9—N1 116.0 (5)
O2—C2—C1 115.4 (5) N2—C9—C10 111.6 (5)
C3—C2—C1 120.2 (5) N1—C9—C10 132.3 (5)
C2—C3—C4 119.9 (5) C11—C10—C9 106.0 (5)
C2—C3—H3 120.0 C11—C10—H10 127.0
C4—C3—H3 120.0 C9—C10—H10 127.0
C5—C4—C3 120.1 (5) C10—C11—O3 108.6 (5)
C5—C4—H4 119.9 C10—C11—C12 136.3 (5)
C3—C4—H4 119.9 O3—C11—C12 115.1 (5)
C4—C5—C6 120.8 (5) C11—C12—H12A 109.5
C4—C5—H5 119.6 C11—C12—H12B 109.5
C6—C5—H5 119.6 H12A—C12—H12B 109.5
C5—C6—C1 118.8 (5) C11—C12—H12C 109.5
C5—C6—C8 119.8 (5) H12A—C12—H12C 109.5
C1—C6—C8 121.4 (5) H12B—C12—H12C 109.5
O2—C7—H7A 109.5
C11—O3—N2—C9 −0.8 (5) O1—C1—C6—C8 −1.2 (7)
C7—O2—C2—C3 3.5 (8) C2—C1—C6—C8 179.0 (4)
C7—O2—C2—C1 −176.8 (4) C9—N1—C8—C6 −179.5 (4)
O1—C1—C2—O2 1.2 (7) C5—C6—C8—N1 −178.6 (5)
C6—C1—C2—O2 −179.0 (5) C1—C6—C8—N1 1.0 (7)
O1—C1—C2—C3 −179.0 (5) O3—N2—C9—N1 179.6 (4)
C6—C1—C2—C3 0.8 (7) O3—N2—C9—C10 0.8 (6)
O2—C2—C3—C4 −179.8 (5) C8—N1—C9—N2 −175.0 (5)
C1—C2—C3—C4 0.5 (8) C8—N1—C9—C10 3.5 (8)
C2—C3—C4—C5 −1.1 (8) N2—C9—C10—C11 −0.5 (6)
C3—C4—C5—C6 0.5 (8) N1—C9—C10—C11 −179.0 (5)
C4—C5—C6—C1 0.8 (7) C9—C10—C11—O3 −0.1 (5)
C4—C5—C6—C8 −179.6 (4) C9—C10—C11—C12 −178.7 (6)
O1—C1—C6—C5 178.4 (5) N2—O3—C11—C10 0.6 (5)
C2—C1—C6—C5 −1.4 (7) N2—O3—C11—C12 179.5 (4)

Symmetry codes: (i) x, y, z+1.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1···N1 0.82 1.89 2.616 (5) 147

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2374).

References

  1. Garnovskii, A. D., Nivorozhkin, A. L. & Minkin, V. I. (1993). Coord. Chem. Rev.126, 1–69.
  2. Li, J., Zhao, R. & Ma, C. (2007). Acta Cryst. E63, o4923.
  3. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808001888/cv2374sup1.cif

e-64-0o499-sup1.cif (16.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001888/cv2374Isup2.hkl

e-64-0o499-Isup2.hkl (53.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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