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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Aug 23;64(Pt 9):o1824. doi: 10.1107/S1600536808026846

N-Acetyl-2-hydroxy-N′-[methoxy(1-methylindol-2-yl)methyl]benzohydrazide

Wagee A Yehye a, Noorsaadah Abdul Rahman a, Azhar Ariffin a, Seik Weng Ng a,*
PMCID: PMC2960481  PMID: 21201799

Abstract

In the crystal structure of the title Schiff-base, C20H21N3O4, the amino group forms an N—H⋯O hydrogen bond to the acetyl group of an adjacent mol­ecule, forming a zigzag chain. The 2-hydr­oxy group is inter­nally hydrogen bonded to the amido group though an O—H⋯O hydrogen bond.

Related literature

For medicinal uses of the precursor Schiff base, see: Jin et al. (2006); Joshi et al. (2008); Szczepankiewicz et al. (2001).graphic file with name e-64-o1824-scheme1.jpg

Experimental

Crystal data

  • C20H21N3O4

  • M r = 367.40

  • Monoclinic, Inline graphic

  • a = 11.0075 (3) Å

  • b = 10.5197 (3) Å

  • c = 15.4479 (4) Å

  • β = 93.967 (2)°

  • V = 1784.51 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 100 (2) K

  • 0.20 × 0.15 × 0.10 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: none

  • 16316 measured reflections

  • 4072 independent reflections

  • 2646 reflections with I > 2σ(I)

  • R int = 0.065

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.120

  • S = 1.02

  • 4072 reflections

  • 255 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.26 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026846/tk2298sup1.cif

e-64-o1824-sup1.cif (20.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026846/tk2298Isup2.hkl

e-64-o1824-Isup2.hkl (199.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1o⋯O2 0.87 (1) 1.81 (2) 2.599 (2) 150 (3)
N1—H1n⋯O3i 0.85 (1) 2.01 (1) 2.812 (2) 157 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the University of Malaya for supporting this study (grant No. FS338/2008 A).

supplementary crystallographic information

Comment

The Schiff base, N'-[(1-methyl-1H-indol-2-yl)methylene]-2-hydroxybenzohydrazide, exhibits useful medicinal properties (Jin et al., 2006; Joshi et al., 2008; Szczepankiewicz et al., 2001). When dissolved in acetic anhydride, the compound undergoes a reaction to yield the title compound, (I), Fig. 1. Essentially, a mole of methyl acetate has been added across the carbon-nitrogen double-bond. In the crystal structure of (I), the amino group forms an N–H···O hydrogen bond to the acetyl group of an adjacent molecule to result in a zigzag chain that runs along the b-axis of the orthorhombic unit cell, Table 1. The 2-hydroxy group is internally hydrogen bonded to the amido group though an O–H···O hydrogen bond, Table 1.

Experimental

2-Hydroxybenzohydrazide was condensed with 1-methylindole-3-carboxaldehyde to yield the corresponding Schiff base. To N'-[(1-methyl-1H-indol-2-yl)methylene]-2-hydroxybenzohydrazide (0.88 g, 3 mmol) was added acetic anhydride (10 ml). The mixture was heated to 398–403 K until the reactants dissolved completely. After 2 h of heating, the mixture was cooled and then treated with ethyl acetate and saturated aqueous sodium bicarbonate. The organic layer was separated and dried over anhydrous sodium sulfate. The solvent was evaporated and the resulting solid was recrystallized from methanol to give (I) as colorless crystals.

Refinement

Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.98 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2–1.5U(C). The hydroxy- and ammonium H-atoms were located in a difference Fourier map, and were refined with a distance restraints O–H = N–H = 0.85±0.01 Å; their temperature factors were freely refined.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot (Barbour, 2001) of (I) drawn at the 70% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.

Crystal data

C20H21N3O4 F000 = 776
Mr = 367.40 Dx = 1.367 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 1739 reflections
a = 11.0075 (3) Å θ = 2.2–21.4º
b = 10.5197 (3) Å µ = 0.10 mm1
c = 15.4479 (4) Å T = 100 (2) K
β = 93.967 (2)º Block, colorless
V = 1784.51 (8) Å3 0.20 × 0.15 × 0.10 mm
Z = 4

Data collection

Bruker SMART APEX diffractometer 2646 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.065
Monochromator: graphite θmax = 27.5º
T = 100(2) K θmin = 2.2º
ω scans h = −14→14
Absorption correction: None k = −13→13
16316 measured reflections l = −20→20
4072 independent reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.120   w = 1/[σ2(Fo2) + (0.0466P)2 + 0.3679P] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max = 0.001
4072 reflections Δρmax = 0.26 e Å3
255 parameters Δρmin = −0.26 e Å3
2 restraints Extinction correction: none
Primary atom site location: structure-invariant direct methods

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.75833 (13) 0.62701 (15) 0.28349 (10) 0.0328 (4)
H1O 0.717 (2) 0.5560 (16) 0.2811 (18) 0.069 (10)*
O2 0.57533 (11) 0.47150 (13) 0.28757 (9) 0.0266 (3)
O3 0.27682 (12) 0.25872 (13) 0.22300 (9) 0.0279 (3)
O4 0.41144 (11) 0.35118 (13) 0.43051 (8) 0.0257 (3)
N1 0.38731 (14) 0.55433 (15) 0.29735 (10) 0.0197 (4)
H1N 0.3430 (17) 0.6189 (15) 0.3061 (14) 0.037 (6)*
N2 0.33109 (13) 0.43653 (14) 0.29605 (10) 0.0188 (3)
N3 0.12618 (13) 0.52539 (15) 0.40494 (10) 0.0205 (4)
C1 0.68446 (17) 0.7144 (2) 0.31706 (12) 0.0262 (5)
C2 0.73287 (19) 0.8337 (2) 0.33795 (14) 0.0315 (5)
H2 0.8144 0.8530 0.3262 0.038*
C3 0.6634 (2) 0.9230 (2) 0.37533 (14) 0.0354 (5)
H3 0.6972 1.0042 0.3892 0.042*
C4 0.54370 (19) 0.8971 (2) 0.39356 (13) 0.0308 (5)
H4 0.4966 0.9592 0.4209 0.037*
C5 0.49478 (18) 0.78036 (18) 0.37132 (12) 0.0249 (4)
H5 0.4132 0.7621 0.3837 0.030*
C6 0.56213 (17) 0.68846 (18) 0.33118 (12) 0.0225 (4)
C7 0.51091 (17) 0.56257 (18) 0.30497 (11) 0.0207 (4)
C8 0.31298 (16) 0.36884 (19) 0.22067 (12) 0.0221 (4)
C9 0.33655 (19) 0.4356 (2) 0.13833 (13) 0.0294 (5)
H9A 0.3008 0.3867 0.0889 0.044*
H9B 0.4246 0.4435 0.1337 0.044*
H9C 0.2997 0.5204 0.1383 0.044*
C10 0.30451 (16) 0.38509 (18) 0.38166 (12) 0.0212 (4)
H10 0.2504 0.3091 0.3736 0.025*
C11 0.24263 (16) 0.48432 (18) 0.43178 (12) 0.0208 (4)
C12 0.28551 (17) 0.55066 (18) 0.50327 (12) 0.0227 (4)
H12 0.3624 0.5400 0.5343 0.027*
C13 0.19310 (17) 0.63891 (18) 0.52267 (12) 0.0222 (4)
C14 0.18300 (18) 0.73351 (19) 0.58605 (12) 0.0261 (5)
H14 0.2474 0.7477 0.6291 0.031*
C15 0.07752 (18) 0.8057 (2) 0.58468 (13) 0.0282 (5)
H15 0.0704 0.8708 0.6267 0.034*
C16 −0.01854 (18) 0.7841 (2) 0.52232 (13) 0.0295 (5)
H16 −0.0899 0.8348 0.5230 0.035*
C17 −0.01235 (17) 0.6909 (2) 0.45972 (13) 0.0260 (5)
H17 −0.0785 0.6754 0.4182 0.031*
C18 0.09490 (16) 0.62076 (18) 0.46006 (12) 0.0220 (4)
C19 0.05096 (17) 0.4838 (2) 0.32897 (12) 0.0269 (5)
H19A −0.0351 0.4872 0.3415 0.040*
H19B 0.0726 0.3963 0.3144 0.040*
H19C 0.0647 0.5397 0.2799 0.040*
C20 0.4677 (2) 0.24041 (19) 0.39780 (14) 0.0313 (5)
H20A 0.5395 0.2183 0.4358 0.047*
H20B 0.4924 0.2574 0.3392 0.047*
H20C 0.4097 0.1696 0.3960 0.047*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0245 (7) 0.0335 (9) 0.0408 (9) −0.0008 (7) 0.0048 (6) 0.0009 (7)
O2 0.0224 (7) 0.0240 (8) 0.0339 (8) 0.0036 (6) 0.0054 (6) −0.0027 (6)
O3 0.0311 (8) 0.0184 (8) 0.0342 (8) −0.0058 (6) 0.0016 (6) −0.0067 (6)
O4 0.0282 (7) 0.0211 (8) 0.0272 (7) 0.0051 (6) −0.0028 (6) −0.0001 (6)
N1 0.0201 (8) 0.0107 (8) 0.0284 (9) −0.0007 (7) 0.0024 (7) −0.0012 (7)
N2 0.0219 (8) 0.0112 (8) 0.0235 (8) −0.0031 (6) 0.0023 (6) −0.0011 (7)
N3 0.0213 (8) 0.0190 (9) 0.0213 (8) −0.0025 (7) 0.0010 (6) −0.0028 (7)
C1 0.0270 (10) 0.0277 (12) 0.0236 (10) −0.0010 (9) −0.0011 (8) 0.0057 (9)
C2 0.0291 (11) 0.0302 (12) 0.0345 (12) −0.0109 (10) −0.0027 (9) 0.0081 (10)
C3 0.0452 (13) 0.0230 (12) 0.0364 (12) −0.0101 (10) −0.0088 (10) 0.0048 (10)
C4 0.0420 (13) 0.0197 (11) 0.0297 (11) −0.0021 (9) −0.0028 (10) −0.0017 (9)
C5 0.0296 (10) 0.0209 (11) 0.0239 (10) −0.0027 (9) −0.0014 (8) 0.0013 (9)
C6 0.0252 (10) 0.0184 (10) 0.0236 (10) −0.0025 (8) 0.0000 (8) 0.0049 (8)
C7 0.0243 (10) 0.0205 (10) 0.0172 (9) −0.0013 (8) 0.0020 (7) 0.0030 (8)
C8 0.0194 (9) 0.0207 (11) 0.0259 (10) 0.0033 (8) 0.0002 (8) −0.0026 (8)
C9 0.0338 (11) 0.0306 (12) 0.0241 (10) −0.0007 (10) 0.0028 (9) −0.0032 (9)
C10 0.0228 (9) 0.0176 (10) 0.0232 (10) −0.0010 (8) 0.0007 (8) 0.0005 (8)
C11 0.0222 (9) 0.0175 (10) 0.0228 (9) −0.0016 (8) 0.0022 (8) 0.0017 (8)
C12 0.0238 (10) 0.0231 (11) 0.0213 (9) 0.0003 (8) 0.0008 (8) 0.0007 (8)
C13 0.0251 (10) 0.0199 (10) 0.0218 (10) −0.0024 (8) 0.0036 (8) 0.0030 (8)
C14 0.0304 (11) 0.0268 (12) 0.0216 (10) −0.0033 (9) 0.0043 (8) −0.0024 (9)
C15 0.0356 (11) 0.0238 (11) 0.0263 (10) 0.0006 (9) 0.0090 (9) −0.0047 (9)
C16 0.0282 (11) 0.0289 (12) 0.0326 (11) 0.0042 (9) 0.0101 (9) 0.0009 (10)
C17 0.0229 (10) 0.0266 (11) 0.0286 (11) −0.0011 (8) 0.0036 (8) 0.0012 (9)
C18 0.0236 (9) 0.0193 (10) 0.0236 (10) −0.0040 (8) 0.0059 (8) 0.0000 (8)
C19 0.0247 (10) 0.0279 (12) 0.0274 (11) −0.0023 (9) −0.0028 (8) −0.0050 (9)
C20 0.0367 (12) 0.0185 (11) 0.0378 (12) 0.0085 (9) −0.0026 (10) 0.0007 (9)

Geometric parameters (Å, °)

O1—C1 1.354 (2) C8—C9 1.491 (3)
O1—H1O 0.871 (10) C9—H9A 0.9800
O2—C7 1.233 (2) C9—H9B 0.9800
O3—C8 1.226 (2) C9—H9C 0.9800
O4—C10 1.400 (2) C10—C11 1.492 (3)
O4—C20 1.428 (2) C10—H10 1.0000
N1—C7 1.360 (2) C11—C12 1.363 (3)
N1—N2 1.385 (2) C12—C13 1.424 (3)
N1—H1N 0.852 (9) C12—H12 0.9500
N2—C8 1.368 (2) C13—C14 1.406 (3)
N2—C10 1.477 (2) C13—C18 1.413 (3)
N3—C18 1.375 (2) C14—C15 1.387 (3)
N3—C11 1.389 (2) C14—H14 0.9500
N3—C19 1.456 (2) C15—C16 1.399 (3)
C1—C2 1.393 (3) C15—H15 0.9500
C1—C6 1.406 (3) C16—C17 1.382 (3)
C2—C3 1.365 (3) C16—H16 0.9500
C2—H2 0.9500 C17—C18 1.392 (3)
C3—C4 1.393 (3) C17—H17 0.9500
C3—H3 0.9500 C19—H19A 0.9800
C4—C5 1.375 (3) C19—H19B 0.9800
C4—H4 0.9500 C19—H19C 0.9800
C5—C6 1.390 (3) C20—H20A 0.9800
C5—H5 0.9500 C20—H20B 0.9800
C6—C7 1.485 (3) C20—H20C 0.9800
C1—O1—H1O 106.0 (19) O4—C10—C11 107.19 (14)
C10—O4—C20 112.71 (14) N2—C10—C11 109.52 (15)
C7—N1—N2 120.11 (16) O4—C10—H10 109.6
C7—N1—H1N 121.0 (15) N2—C10—H10 109.6
N2—N1—H1N 117.1 (15) C11—C10—H10 109.6
C8—N2—N1 121.13 (15) C12—C11—N3 110.09 (17)
C8—N2—C10 123.05 (15) C12—C11—C10 129.33 (17)
N1—N2—C10 115.52 (14) N3—C11—C10 120.52 (16)
C18—N3—C11 107.92 (15) C11—C12—C13 106.97 (16)
C18—N3—C19 124.45 (16) C11—C12—H12 126.5
C11—N3—C19 127.50 (16) C13—C12—H12 126.5
O1—C1—C2 118.06 (18) C14—C13—C18 118.61 (18)
O1—C1—C6 122.32 (18) C14—C13—C12 134.43 (18)
C2—C1—C6 119.6 (2) C18—C13—C12 106.95 (17)
C3—C2—C1 120.1 (2) C15—C14—C13 118.93 (18)
C3—C2—H2 119.9 C15—C14—H14 120.5
C1—C2—H2 119.9 C13—C14—H14 120.5
C2—C3—C4 121.1 (2) C14—C15—C16 120.91 (19)
C2—C3—H3 119.4 C14—C15—H15 119.5
C4—C3—H3 119.4 C16—C15—H15 119.5
C5—C4—C3 118.9 (2) C17—C16—C15 121.71 (19)
C5—C4—H4 120.5 C17—C16—H16 119.1
C3—C4—H4 120.5 C15—C16—H16 119.1
C4—C5—C6 121.40 (19) C16—C17—C18 117.16 (18)
C4—C5—H5 119.3 C16—C17—H17 121.4
C6—C5—H5 119.3 C18—C17—H17 121.4
C5—C6—C1 118.71 (18) N3—C18—C17 129.29 (17)
C5—C6—C7 122.54 (17) N3—C18—C13 108.07 (16)
C1—C6—C7 118.73 (18) C17—C18—C13 122.64 (18)
O2—C7—N1 121.25 (17) N3—C19—H19A 109.5
O2—C7—C6 122.64 (17) N3—C19—H19B 109.5
N1—C7—C6 116.05 (17) H19A—C19—H19B 109.5
O3—C8—N2 119.69 (18) N3—C19—H19C 109.5
O3—C8—C9 123.09 (18) H19A—C19—H19C 109.5
N2—C8—C9 117.21 (17) H19B—C19—H19C 109.5
C8—C9—H9A 109.5 O4—C20—H20A 109.5
C8—C9—H9B 109.5 O4—C20—H20B 109.5
H9A—C9—H9B 109.5 H20A—C20—H20B 109.5
C8—C9—H9C 109.5 O4—C20—H20C 109.5
H9A—C9—H9C 109.5 H20A—C20—H20C 109.5
H9B—C9—H9C 109.5 H20B—C20—H20C 109.5
O4—C10—N2 111.40 (15)
C7—N1—N2—C8 −84.8 (2) N1—N2—C10—C11 48.99 (19)
C7—N1—N2—C10 89.2 (2) C18—N3—C11—C12 0.6 (2)
O1—C1—C2—C3 −177.23 (18) C19—N3—C11—C12 176.65 (18)
C6—C1—C2—C3 2.8 (3) C18—N3—C11—C10 −176.91 (16)
C1—C2—C3—C4 0.2 (3) C19—N3—C11—C10 −0.9 (3)
C2—C3—C4—C5 −1.6 (3) O4—C10—C11—C12 11.2 (3)
C3—C4—C5—C6 −0.1 (3) N2—C10—C11—C12 −109.8 (2)
C4—C5—C6—C1 3.0 (3) O4—C10—C11—N3 −171.84 (16)
C4—C5—C6—C7 −178.81 (18) N2—C10—C11—N3 67.2 (2)
O1—C1—C6—C5 175.68 (17) N3—C11—C12—C13 −0.6 (2)
C2—C1—C6—C5 −4.3 (3) C10—C11—C12—C13 176.68 (18)
O1—C1—C6—C7 −2.6 (3) C11—C12—C13—C14 −178.7 (2)
C2—C1—C6—C7 177.42 (17) C11—C12—C13—C18 0.3 (2)
N2—N1—C7—O2 19.8 (3) C18—C13—C14—C15 −0.2 (3)
N2—N1—C7—C6 −162.92 (15) C12—C13—C14—C15 178.6 (2)
C5—C6—C7—O2 −163.41 (18) C13—C14—C15—C16 1.0 (3)
C1—C6—C7—O2 14.8 (3) C14—C15—C16—C17 −0.2 (3)
C5—C6—C7—N1 19.4 (3) C15—C16—C17—C18 −1.3 (3)
C1—C6—C7—N1 −162.41 (17) C11—N3—C18—C17 −179.76 (19)
N1—N2—C8—O3 171.07 (16) C19—N3—C18—C17 4.0 (3)
C10—N2—C8—O3 −2.5 (3) C11—N3—C18—C13 −0.4 (2)
N1—N2—C8—C9 −10.1 (2) C19—N3—C18—C13 −176.59 (17)
C10—N2—C8—C9 176.32 (16) C16—C17—C18—N3 −178.60 (19)
C20—O4—C10—N2 −71.2 (2) C16—C17—C18—C13 2.1 (3)
C20—O4—C10—C11 168.97 (15) C14—C13—C18—N3 179.21 (16)
C8—N2—C10—O4 104.46 (19) C12—C13—C18—N3 0.1 (2)
N1—N2—C10—O4 −69.42 (19) C14—C13—C18—C17 −1.4 (3)
C8—N2—C10—C11 −137.13 (17) C12—C13—C18—C17 179.47 (18)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1o···O2 0.87 (1) 1.81 (2) 2.599 (2) 150 (3)
N1—H1n···O3i 0.85 (1) 2.01 (1) 2.812 (2) 157 (2)

Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2298).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026846/tk2298sup1.cif

e-64-o1824-sup1.cif (20.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026846/tk2298Isup2.hkl

e-64-o1824-Isup2.hkl (199.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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