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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Aug 16;64(Pt 9):o1777. doi: 10.1107/S1600536808026044

N′-(2-Hydr­oxy-5-nitro­benzyl­idene)-2-(1H-indol-3-yl)acetohydrazide

Subramaniam Puvaneswary a, Hapipah M Ali a, Ward T Robinson a, Seik Weng Ng a,*
PMCID: PMC2960495  PMID: 21201757

Abstract

The mol­ecule of the title compound, C17H14N4O4, uses its amide –NH– group to form a hydrogen bond to the amido –C(=O)– group of an adjacent mol­ecule to furnish a linear chain structure. The hydr­oxy group forms an intra­molecular hydrogen bond; the indolyl –NH– unit does not engage in any strong hydrogen-bonding inter­actions.

Related literature

For similar compounds, see: Martin Reyes et al. (1986); Martin Zarza et al. (1989).graphic file with name e-64-o1777-scheme1.jpg

Experimental

Crystal data

  • C17H14N4O4

  • M r = 338.32

  • Orthorhombic, Inline graphic

  • a = 9.5387 (2) Å

  • b = 11.2724 (3) Å

  • c = 29.7796 (7) Å

  • V = 3202.0 (1) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 100 (2) K

  • 0.30 × 0.25 × 0.20 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: none

  • 47721 measured reflections

  • 3679 independent reflections

  • 2059 reflections with I > 2σ(I)

  • R int = 0.052

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.160

  • S = 1.02

  • 3679 reflections

  • 228 parameters

  • H-atom parameters constrained

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026044/bq2091sup1.cif

e-64-o1777-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026044/bq2091Isup2.hkl

e-64-o1777-Isup2.hkl (180.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1o⋯N2 0.84 1.85 2.583 (2) 146
N3—H3n⋯O4i 0.88 2.07 2.827 (2) 144

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the Science Fund (12–02-03–2031, 12–02-03–2051) and the University of Malaya (PJP) for supporting this study. We are grateful to the University of Malaya for the purchase of the diffractometer.

supplementary crystallographic information

Comment

There are many examples of Schiff bases derived from the condensation of salicylaldehyde and substituted salicyldehydes with hydrazides such as the ones reported by Martin Reyes et al. (1986) and Martin Zarza et al. (1989). The title compound (Fig. 1) is another example. The molecule uses its amido –NH– group to form a hydrogen bond to the amido –C(=O)– group of an adjacent molecule to furnish a linear chain structure.

Experimental

The Schiff base was prepared by refluxing a solution of indole-3-acetic acid hydrazide (0.34 g, 1.80 mmol) and 5-nitrosalicylaldehyde (0.30 g, 1.80 mmol) in acidified ethanol (25 ml) for 2 h. On cooling to room temperature, yellow crystals separated out.

Refinement

All H-atoms were placed in calculated positions (C—H 0.95, N—H 0.88, O–H 0.84 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2 to 1.5Ueq(C,N,O).

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot of (I) (Barbour, 2001) at the 50% probability level. Dashed line indicates H-bonding.

Crystal data

C17H14N4O4 F000 = 1408
Mr = 338.32 Dx = 1.404 Mg m3
Orthorhombic, Pbca Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 3679 reflections
a = 9.5387 (2) Å θ = 2.5–22.2º
b = 11.2724 (3) Å µ = 0.10 mm1
c = 29.7796 (7) Å T = 100 (2) K
V = 3202.0 (1) Å3 Irregular block, yellow
Z = 8 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEX diffractometer 2059 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.053
Monochromator: graphite θmax = 27.5º
T = 100(2) K θmin = 1.4º
ω scans h = −12→12
Absorption correction: None k = −14→13
47721 measured reflections l = −38→38
3679 independent reflections

Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.044   w = 1/[σ2(Fo2) + (0.0885P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.160 (Δ/σ)max = 0.001
S = 1.02 Δρmax = 0.18 e Å3
3679 reflections Δρmin = −0.21 e Å3
228 parameters Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.007 (1)
Secondary atom site location: difference Fourier map

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.76143 (16) 0.34962 (15) 0.66810 (5) 0.0747 (5)
H1O 0.7344 0.4058 0.6845 0.112*
O2 0.50825 (18) 0.27110 (16) 0.47819 (5) 0.0896 (6)
O3 0.36688 (19) 0.40496 (16) 0.50246 (5) 0.0853 (5)
O4 0.78329 (15) 0.61201 (15) 0.75230 (5) 0.0790 (5)
N1 0.4670 (2) 0.33901 (17) 0.50757 (6) 0.0647 (5)
N2 0.60812 (15) 0.52866 (14) 0.69094 (5) 0.0522 (4)
N3 0.56843 (16) 0.61209 (15) 0.72184 (5) 0.0543 (5)
H3N 0.4821 0.6397 0.7223 0.065*
N4 0.79603 (19) 0.75966 (17) 0.89103 (6) 0.0712 (5)
H4N 0.8598 0.7879 0.9095 0.085*
C1 0.6858 (2) 0.34823 (18) 0.63004 (7) 0.0563 (5)
C2 0.7229 (2) 0.26733 (18) 0.59698 (8) 0.0651 (6)
H2 0.7980 0.2137 0.6022 0.078*
C3 0.6523 (2) 0.26386 (18) 0.55689 (7) 0.0625 (6)
H3 0.6787 0.2090 0.5342 0.075*
C4 0.5426 (2) 0.34134 (17) 0.55005 (6) 0.0538 (5)
C5 0.5011 (2) 0.42048 (16) 0.58253 (6) 0.0511 (5)
H5 0.4237 0.4715 0.5772 0.061*
C6 0.57211 (19) 0.42584 (16) 0.62300 (6) 0.0473 (5)
C7 0.53086 (19) 0.51242 (17) 0.65658 (6) 0.0505 (5)
H7 0.4468 0.5567 0.6530 0.061*
C8 0.6644 (2) 0.65087 (18) 0.75150 (6) 0.0555 (5)
C9 0.6133 (2) 0.7485 (2) 0.78219 (6) 0.0643 (6)
H9A 0.6427 0.8262 0.7699 0.077*
H9B 0.5095 0.7472 0.7832 0.077*
C10 0.6695 (2) 0.73543 (17) 0.82885 (6) 0.0546 (5)
C11 0.7735 (2) 0.7979 (2) 0.84821 (7) 0.0684 (6)
H11 0.8242 0.8600 0.8340 0.082*
C12 0.62245 (19) 0.65262 (16) 0.86168 (7) 0.0514 (5)
C13 0.5173 (2) 0.56695 (18) 0.86298 (8) 0.0626 (6)
H13 0.4599 0.5530 0.8374 0.075*
C14 0.4978 (3) 0.50326 (19) 0.90151 (9) 0.0745 (7)
H14 0.4262 0.4447 0.9024 0.089*
C15 0.5803 (3) 0.5221 (2) 0.93952 (8) 0.0753 (7)
H15 0.5640 0.4760 0.9657 0.090*
C16 0.6847 (2) 0.6062 (2) 0.93974 (7) 0.0667 (6)
H16 0.7411 0.6194 0.9655 0.080*
C17 0.7037 (2) 0.67047 (18) 0.90073 (7) 0.0561 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0634 (10) 0.0901 (11) 0.0707 (10) 0.0201 (8) −0.0089 (8) 0.0030 (8)
O2 0.0991 (14) 0.1023 (13) 0.0672 (11) −0.0122 (10) 0.0139 (9) −0.0333 (10)
O3 0.0835 (12) 0.0954 (12) 0.0771 (11) 0.0045 (10) −0.0245 (9) −0.0215 (9)
O4 0.0393 (9) 0.1232 (13) 0.0745 (11) 0.0156 (8) −0.0106 (7) −0.0360 (9)
N1 0.0663 (12) 0.0712 (12) 0.0566 (11) −0.0201 (10) 0.0062 (9) −0.0134 (10)
N2 0.0406 (9) 0.0683 (10) 0.0477 (9) −0.0033 (8) 0.0012 (7) −0.0058 (8)
N3 0.0360 (8) 0.0762 (11) 0.0507 (10) 0.0042 (8) 0.0002 (7) −0.0134 (8)
N4 0.0664 (12) 0.0860 (13) 0.0612 (11) −0.0182 (10) −0.0085 (9) −0.0171 (10)
C1 0.0460 (11) 0.0607 (12) 0.0623 (13) −0.0011 (9) 0.0046 (10) 0.0044 (10)
C2 0.0548 (13) 0.0590 (13) 0.0814 (16) 0.0065 (10) 0.0103 (12) 0.0004 (11)
C3 0.0592 (14) 0.0557 (12) 0.0724 (15) −0.0079 (10) 0.0201 (12) −0.0112 (10)
C4 0.0512 (12) 0.0533 (11) 0.0568 (12) −0.0139 (9) 0.0058 (10) −0.0048 (9)
C5 0.0460 (11) 0.0536 (11) 0.0536 (11) −0.0039 (9) 0.0030 (8) −0.0029 (9)
C6 0.0409 (10) 0.0498 (10) 0.0513 (11) −0.0052 (8) 0.0050 (8) 0.0011 (9)
C7 0.0416 (11) 0.0583 (11) 0.0515 (11) −0.0014 (9) 0.0018 (9) −0.0006 (9)
C8 0.0428 (12) 0.0750 (13) 0.0488 (11) 0.0012 (10) −0.0009 (9) −0.0068 (10)
C9 0.0573 (13) 0.0742 (14) 0.0613 (13) 0.0078 (11) −0.0020 (10) −0.0119 (11)
C10 0.0496 (12) 0.0617 (12) 0.0524 (11) −0.0006 (9) 0.0004 (9) −0.0154 (9)
C11 0.0671 (15) 0.0730 (14) 0.0650 (14) −0.0150 (12) 0.0039 (11) −0.0092 (11)
C12 0.0443 (11) 0.0532 (11) 0.0568 (12) 0.0047 (9) 0.0009 (9) −0.0189 (9)
C13 0.0534 (13) 0.0564 (12) 0.0781 (15) −0.0004 (10) −0.0012 (11) −0.0154 (11)
C14 0.0665 (15) 0.0541 (12) 0.103 (2) −0.0025 (11) 0.0122 (14) −0.0064 (13)
C15 0.0858 (18) 0.0594 (13) 0.0808 (17) 0.0180 (13) 0.0207 (14) 0.0039 (12)
C16 0.0717 (15) 0.0718 (14) 0.0566 (13) 0.0192 (13) −0.0007 (11) −0.0090 (11)
C17 0.0523 (12) 0.0578 (12) 0.0583 (12) 0.0059 (10) 0.0013 (10) −0.0171 (10)

Geometric parameters (Å, °)

O1—C1 1.344 (2) C5—H5 0.9500
O1—H1O 0.8400 C6—C7 1.452 (3)
O2—N1 1.227 (2) C7—H7 0.9500
O3—N1 1.220 (2) C8—C9 1.512 (3)
O4—C8 1.216 (2) C9—C10 1.497 (3)
N1—C4 1.456 (3) C9—H9A 0.9900
N2—C7 1.274 (2) C9—H9B 0.9900
N2—N3 1.369 (2) C10—C11 1.347 (3)
N3—C8 1.345 (2) C10—C12 1.424 (3)
N3—H3N 0.8800 C11—H11 0.9500
N4—C11 1.363 (3) C12—C13 1.393 (3)
N4—C17 1.367 (3) C12—C17 1.412 (3)
N4—H4N 0.8800 C13—C14 1.366 (3)
C1—C2 1.388 (3) C13—H13 0.9500
C1—C6 1.409 (3) C14—C15 1.395 (3)
C2—C3 1.371 (3) C14—H14 0.9500
C2—H2 0.9500 C15—C16 1.375 (3)
C3—C4 1.378 (3) C15—H15 0.9500
C3—H3 0.9500 C16—C17 1.381 (3)
C4—C5 1.374 (3) C16—H16 0.9500
C5—C6 1.384 (3)
C1—O1—H1O 109.5 O4—C8—C9 123.48 (18)
O3—N1—O2 122.85 (19) N3—C8—C9 114.46 (18)
O3—N1—C4 119.01 (18) C10—C9—C8 111.95 (17)
O2—N1—C4 118.1 (2) C10—C9—H9A 109.2
C7—N2—N3 118.59 (16) C8—C9—H9A 109.2
C8—N3—N2 118.45 (16) C10—C9—H9B 109.2
C8—N3—H3N 120.8 C8—C9—H9B 109.2
N2—N3—H3N 120.8 H9A—C9—H9B 107.9
C11—N4—C17 109.21 (17) C11—C10—C12 106.33 (18)
C11—N4—H4N 125.4 C11—C10—C9 127.6 (2)
C17—N4—H4N 125.4 C12—C10—C9 126.11 (18)
O1—C1—C2 117.97 (19) C10—C11—N4 110.5 (2)
O1—C1—C6 122.12 (18) C10—C11—H11 124.7
C2—C1—C6 119.91 (19) N4—C11—H11 124.7
C3—C2—C1 120.8 (2) C13—C12—C17 118.12 (19)
C3—C2—H2 119.6 C13—C12—C10 134.45 (19)
C1—C2—H2 119.6 C17—C12—C10 107.40 (17)
C2—C3—C4 118.89 (19) C14—C13—C12 119.1 (2)
C2—C3—H3 120.6 C14—C13—H13 120.5
C4—C3—H3 120.6 C12—C13—H13 120.5
C5—C4—C3 121.73 (19) C13—C14—C15 121.7 (2)
C5—C4—N1 118.73 (19) C13—C14—H14 119.2
C3—C4—N1 119.54 (18) C15—C14—H14 119.2
C4—C5—C6 120.04 (18) C16—C15—C14 121.2 (2)
C4—C5—H5 120.0 C16—C15—H15 119.4
C6—C5—H5 120.0 C14—C15—H15 119.4
C5—C6—C1 118.63 (17) C15—C16—C17 116.9 (2)
C5—C6—C7 119.78 (17) C15—C16—H16 121.5
C1—C6—C7 121.58 (18) C17—C16—H16 121.5
N2—C7—C6 119.53 (17) N4—C17—C16 130.4 (2)
N2—C7—H7 120.2 N4—C17—C12 106.52 (18)
C6—C7—H7 120.2 C16—C17—C12 123.1 (2)
O4—C8—N3 122.03 (18)
C7—N2—N3—C8 −163.35 (18) N3—C8—C9—C10 142.14 (19)
O1—C1—C2—C3 −178.10 (19) C8—C9—C10—C11 103.7 (2)
C6—C1—C2—C3 1.7 (3) C8—C9—C10—C12 −76.0 (3)
C1—C2—C3—C4 −0.7 (3) C12—C10—C11—N4 0.4 (2)
C2—C3—C4—C5 −0.9 (3) C9—C10—C11—N4 −179.39 (19)
C2—C3—C4—N1 179.78 (17) C17—N4—C11—C10 −0.8 (2)
O3—N1—C4—C5 −1.9 (3) C11—C10—C12—C13 177.9 (2)
O2—N1—C4—C5 177.32 (17) C9—C10—C12—C13 −2.4 (3)
O3—N1—C4—C3 177.38 (18) C11—C10—C12—C17 0.1 (2)
O2—N1—C4—C3 −3.4 (3) C9—C10—C12—C17 179.90 (18)
C3—C4—C5—C6 1.6 (3) C17—C12—C13—C14 −0.6 (3)
N1—C4—C5—C6 −179.14 (16) C10—C12—C13—C14 −178.1 (2)
C4—C5—C6—C1 −0.5 (3) C12—C13—C14—C15 0.1 (3)
C4—C5—C6—C7 177.88 (16) C13—C14—C15—C16 0.2 (3)
O1—C1—C6—C5 178.74 (17) C14—C15—C16—C17 −0.1 (3)
C2—C1—C6—C5 −1.0 (3) C11—N4—C17—C16 −178.7 (2)
O1—C1—C6—C7 0.3 (3) C11—N4—C17—C12 0.8 (2)
C2—C1—C6—C7 −179.43 (17) C15—C16—C17—N4 179.0 (2)
N3—N2—C7—C6 178.97 (15) C15—C16—C17—C12 −0.4 (3)
C5—C6—C7—N2 −170.09 (17) C13—C12—C17—N4 −178.75 (16)
C1—C6—C7—N2 8.3 (3) C10—C12—C17—N4 −0.6 (2)
N2—N3—C8—O4 −1.8 (3) C13—C12—C17—C16 0.8 (3)
N2—N3—C8—C9 176.17 (17) C10—C12—C17—C16 178.93 (18)
O4—C8—C9—C10 −39.9 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1o···N2 0.84 1.85 2.583 (2) 146
N3—H3n···O4i 0.88 2.07 2.827 (2) 144
N4—H4n···O2ii 0.88 2.49 3.216 (2) 140

Symmetry codes: (i) x−1/2, y, −z+3/2; (ii) −x+3/2, −y+1, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2091).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Martin Reyes, M. G., Gili, P., Zarza, P. M., Medina Ortega, A. & Diaz Gonzalez, M. C. (1986). Inorg. Chim. Acta, 116, 153–156.
  4. Martin Zarza, P., Gili, P., Mederos, A. & Medina, A. (1989). Thermochim. Acta, 156, 231–238.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Westrip, S. P. (2008). publCIF In preparation.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026044/bq2091sup1.cif

e-64-o1777-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026044/bq2091Isup2.hkl

e-64-o1777-Isup2.hkl (180.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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