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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Aug 16;64(Pt 9):o1763. doi: 10.1107/S1600536808025300

4,4′-(Propane-1,3-di­yl)dipiperidinium sulfate monohydrate

E Yang a,*, Xu-Chun Song a, Rong-Qiang Zhuang b
PMCID: PMC2960564  PMID: 21201745

Abstract

In the title compound, C13H28N2 2+·SO4 2−·H2O, extensive hydrogen-bonding inter­actions between the protonated 4,4′-(propane-1,3-di­yl)dipiperidinium ions, the sulfate anions and the water mol­ecules lead to a three-dimensional pillared and layered structure with the 4,4′-(propane-1,3-di­yl)­dipiperidinium ions acting as the pillars.graphic file with name e-64-o1763-scheme1.jpg

Experimental

Crystal data

  • C13H28N2 2+·SO4 2−·H2O

  • M r = 326.45

  • Monoclinic, Inline graphic

  • a = 6.2019 (2) Å

  • b = 22.5110 (5) Å

  • c = 12.0052 (3) Å

  • β = 100.439 (2)°

  • V = 1648.32 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 293 (2) K

  • 0.22 × 0.14 × 0.09 mm

Data collection

  • Siemens SMART 1K CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.927, T max = 0.98

  • 13022 measured reflections

  • 2932 independent reflections

  • 2011 reflections with I > 2σ(I)

  • R int = 0.066

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.131

  • S = 1.03

  • 2932 reflections

  • 202 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.34 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Bergerhoff et al., 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808025300/fj2138sup1.cif

e-64-o1763-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808025300/fj2138Isup2.hkl

e-64-o1763-Isup2.hkl (143.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1WA⋯O4i 0.85 1.98 2.819 (3) 168
O1W—H1WB⋯O3ii 0.85 1.97 2.799 (3) 165
N1—H1NA⋯O4iii 0.94 (3) 2.09 (3) 2.904 (3) 144 (3)
N1—H1NB⋯O3iv 0.85 (3) 1.91 (3) 2.711 (3) 157 (3)
N2—H2NA⋯O1v 0.88 (3) 1.83 (3) 2.704 (3) 177 (3)
N2—H2NB⋯O4vi 0.92 (3) 2.02 (3) 2.845 (4) 149 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the Natural Science Foundation of Fujian Province (2006 F3042).

supplementary crystallographic information

Comment

The asymmetric unit of the title compound, (I), consists of one protonated 4,4'-(propane-1,3-diyl)dipiperidinium ion, one deprotonated sulfate anion and one water molecule (Figure 1). Both protonated N ends of the 4,4'-(propane-1,3-diyl)dipiperidinium ion form N—H···O hydrogen bonds with the sulfate anion, as well as the water molecules form O—H···O hydrogen bonds with the sulfate anion, which leads to the formation of two-dimensional hydrogen-bonding layer parallel to the ac plane (Table 1 & Figure 2). The resulting layers are further pillared by the 4,4'-(propane-1,3-diyl)dipiperidinium ions to complete the three-dimensional structure.

Experimental

A solution of 4,4-trimethylenedipiperidine (1 mmol), sulfuric acid (1 mmol) and H2O (10 ml) was slowly evaporated at room temperature, giving colorless single crystals suitable for X-ray analysis.

Refinement

The H atoms bonded to C and O atoms were placed at calculated positions, and refined with isotropic displacement parameters, using a riding model [C—H 0.93Å and Uiso(H) = 1.2Ueq(C); O—H 0.85Å and Uiso(H) = 1.5Ueq(C)]. The H atoms bonded to N atoms were refined freely.

Figures

Fig. 1.

Fig. 1.

A view of the title compound, showing 30% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The three-dimensional structure of the title compound, showing the hydrogen bonding interactions (dashed lines).

Crystal data

C13H28N22+·S1O42–·H2O F000 = 712
Mr = 326.45 Dx = 1.315 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 99 reflections
a = 6.2019 (2) Å θ = 2.0–25.1º
b = 22.5110 (5) Å µ = 0.22 mm1
c = 12.0052 (3) Å T = 293 (2) K
β = 100.439 (2)º Prism, colorless
V = 1648.32 (8) Å3 0.22 × 0.14 × 0.09 mm
Z = 4

Data collection

Siemens SMART 1K CCD area-detector diffractometer 2932 independent reflections
Radiation source: fine-focus sealed tube 2011 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.066
T = 293(2) K θmax = 25.1º
φ and ω scans θmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) h = −7→7
Tmin = 0.927, Tmax = 0.98 k = −26→26
13022 measured reflections l = −13→14

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.131   w = 1/[σ2(Fo2) + (0.0635P)2 + 0.5599P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
2932 reflections Δρmax = 0.34 e Å3
202 parameters Δρmin = −0.39 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.28582 (11) 0.18642 (3) 0.35885 (6) 0.0255 (2)
O1W 0.7186 (3) −0.20465 (10) 0.15532 (19) 0.0458 (6)
H1WA 0.6074 −0.2274 0.1421 0.069*
H1WB 0.8181 −0.2279 0.1410 0.069*
O1 0.2335 (3) 0.19986 (9) 0.23718 (16) 0.0346 (5)
O2 0.2510 (4) 0.12374 (10) 0.38116 (19) 0.0489 (6)
O3 0.5164 (3) 0.20349 (10) 0.40084 (18) 0.0431 (6)
O4 0.1467 (3) 0.22203 (10) 0.42124 (19) 0.0493 (7)
N1 0.1395 (4) −0.13893 (12) 0.4911 (2) 0.0310 (6)
H1NA 0.026 (5) −0.1498 (14) 0.529 (3) 0.046*
H1NB 0.258 (6) −0.1500 (14) 0.533 (3) 0.046*
N2 0.8705 (4) 0.19250 (11) 0.0746 (2) 0.0279 (6)
H2NA 0.986 (5) 0.1962 (14) 0.128 (3) 0.042*
H2NB 0.851 (5) 0.2258 (14) 0.029 (3) 0.042*
C1 0.1335 (5) −0.07379 (13) 0.4752 (3) 0.0328 (7)
H1A 0.1482 −0.0545 0.5484 0.039*
H1B −0.0068 −0.0624 0.4306 0.039*
C2 0.3159 (5) −0.05304 (13) 0.4160 (2) 0.0279 (7)
H2A 0.4555 −0.0589 0.4661 0.033*
H2B 0.2987 −0.0108 0.4007 0.033*
C3 0.3192 (4) −0.08591 (12) 0.3044 (2) 0.0249 (6)
H3A 0.1859 −0.0756 0.2507 0.030*
C4 0.3183 (5) −0.15306 (12) 0.3261 (2) 0.0300 (7)
H4A 0.3080 −0.1739 0.2546 0.036*
H4B 0.4554 −0.1643 0.3739 0.036*
C5 0.1292 (5) −0.17174 (14) 0.3825 (2) 0.0351 (8)
H5A −0.0087 −0.1634 0.3326 0.042*
H5B 0.1369 −0.2141 0.3972 0.042*
C6 0.5170 (5) −0.06873 (12) 0.2525 (2) 0.0297 (7)
H6A 0.5259 −0.0957 0.1905 0.036*
H6B 0.6483 −0.0743 0.3092 0.036*
C7 0.5158 (4) −0.00503 (12) 0.2080 (3) 0.0296 (7)
H7A 0.3918 −0.0001 0.1466 0.036*
H7B 0.4964 0.0222 0.2681 0.036*
C8 0.7255 (5) 0.01124 (13) 0.1655 (3) 0.0315 (7)
H8A 0.8465 0.0112 0.2293 0.038*
H8B 0.7549 −0.0191 0.1129 0.038*
C9 0.6696 (5) 0.18163 (13) 0.1245 (3) 0.0298 (7)
H9A 0.5413 0.1820 0.0647 0.036*
H9B 0.6536 0.2132 0.1774 0.036*
C10 0.6836 (4) 0.12266 (12) 0.1851 (2) 0.0269 (7)
H10A 0.5494 0.1160 0.2141 0.032*
H10B 0.8042 0.1236 0.2491 0.032*
C11 0.7181 (4) 0.07147 (12) 0.1069 (2) 0.0264 (7)
H11A 0.5943 0.0712 0.0433 0.032*
C12 0.9259 (5) 0.08438 (13) 0.0598 (3) 0.0332 (7)
H12A 1.0508 0.0844 0.1215 0.040*
H12B 0.9479 0.0530 0.0076 0.040*
C13 0.9149 (5) 0.14331 (13) −0.0008 (3) 0.0346 (8)
H13A 1.0528 0.1506 −0.0258 0.042*
H13B 0.7997 0.1420 −0.0673 0.042*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0231 (4) 0.0290 (4) 0.0237 (4) −0.0011 (3) 0.0024 (3) −0.0009 (3)
O1W 0.0439 (13) 0.0327 (13) 0.0623 (16) 0.0011 (10) 0.0131 (12) −0.0080 (11)
O1 0.0342 (11) 0.0457 (14) 0.0209 (12) 0.0003 (9) −0.0027 (9) 0.0051 (9)
O2 0.0630 (16) 0.0310 (14) 0.0508 (16) −0.0044 (11) 0.0049 (12) 0.0120 (11)
O3 0.0239 (11) 0.0606 (15) 0.0401 (14) −0.0115 (10) −0.0070 (10) 0.0122 (11)
O4 0.0416 (13) 0.0637 (17) 0.0469 (15) 0.0067 (12) 0.0196 (11) −0.0167 (12)
N1 0.0267 (13) 0.0376 (16) 0.0275 (16) −0.0033 (11) 0.0019 (12) 0.0095 (12)
N2 0.0327 (14) 0.0249 (15) 0.0230 (14) −0.0041 (11) −0.0036 (11) 0.0046 (11)
C1 0.0350 (16) 0.0349 (19) 0.0274 (17) 0.0063 (14) 0.0028 (13) −0.0008 (14)
C2 0.0298 (15) 0.0218 (16) 0.0298 (17) −0.0013 (12) −0.0008 (13) −0.0008 (13)
C3 0.0267 (14) 0.0203 (15) 0.0258 (16) −0.0005 (12) −0.0008 (12) 0.0047 (12)
C4 0.0401 (17) 0.0219 (17) 0.0266 (17) −0.0035 (13) 0.0022 (14) −0.0004 (13)
C5 0.0396 (18) 0.0320 (18) 0.0291 (18) −0.0142 (14) −0.0058 (14) 0.0019 (14)
C6 0.0318 (16) 0.0244 (17) 0.0326 (18) 0.0010 (12) 0.0047 (13) 0.0020 (13)
C7 0.0324 (15) 0.0227 (16) 0.0357 (18) 0.0010 (12) 0.0110 (13) 0.0020 (13)
C8 0.0347 (16) 0.0229 (17) 0.0379 (19) 0.0002 (13) 0.0094 (14) −0.0012 (13)
C9 0.0325 (16) 0.0251 (17) 0.0317 (18) 0.0027 (12) 0.0051 (13) 0.0021 (13)
C10 0.0300 (15) 0.0235 (17) 0.0286 (17) 0.0016 (12) 0.0093 (13) 0.0005 (13)
C11 0.0272 (15) 0.0248 (17) 0.0275 (17) 0.0003 (12) 0.0058 (13) 0.0011 (12)
C12 0.0407 (17) 0.0243 (17) 0.0398 (19) −0.0020 (13) 0.0206 (15) −0.0047 (14)
C13 0.0391 (17) 0.0342 (19) 0.0324 (19) −0.0038 (14) 0.0114 (15) −0.0033 (14)

Geometric parameters (Å, °)

S1—O2 1.459 (2) C4—H4B 0.9700
S1—O1 1.469 (2) C5—H5A 0.9700
S1—O4 1.477 (2) C5—H5B 0.9700
S1—O3 1.478 (2) C6—C7 1.530 (4)
O1W—H1WA 0.8501 C6—H6A 0.9700
O1W—H1WB 0.8500 C6—H6B 0.9700
N1—C1 1.478 (4) C7—C8 1.525 (4)
N1—C5 1.489 (4) C7—H7A 0.9700
N1—H1NA 0.94 (3) C7—H7B 0.9700
N1—H1NB 0.85 (3) C8—C11 1.524 (4)
N2—C13 1.488 (4) C8—H8A 0.9700
N2—C9 1.497 (4) C8—H8B 0.9700
N2—H2NA 0.88 (3) C9—C10 1.509 (4)
N2—H2NB 0.92 (3) C9—H9A 0.9700
C1—C2 1.515 (4) C9—H9B 0.9700
C1—H1A 0.9700 C10—C11 1.526 (4)
C1—H1B 0.9700 C10—H10A 0.9700
C2—C3 1.534 (4) C10—H10B 0.9700
C2—H2A 0.9700 C11—C12 1.527 (4)
C2—H2B 0.9700 C11—H11A 0.9800
C3—C6 1.523 (4) C12—C13 1.509 (4)
C3—C4 1.534 (4) C12—H12A 0.9700
C3—H3A 0.9800 C12—H12B 0.9700
C4—C5 1.516 (4) C13—H13A 0.9700
C4—H4A 0.9700 C13—H13B 0.9700
O2—S1—O1 111.60 (13) C3—C6—C7 115.3 (2)
O2—S1—O4 108.18 (14) C3—C6—H6A 108.4
O1—S1—O4 110.38 (13) C7—C6—H6A 108.4
O2—S1—O3 110.79 (13) C3—C6—H6B 108.4
O1—S1—O3 108.13 (12) C7—C6—H6B 108.4
O4—S1—O3 107.69 (14) H6A—C6—H6B 107.5
H1WA—O1W—H1WB 100.7 C8—C7—C6 113.0 (2)
C1—N1—C5 112.5 (2) C8—C7—H7A 109.0
C1—N1—H1NA 108.6 (19) C6—C7—H7A 109.0
C5—N1—H1NA 112.1 (19) C8—C7—H7B 109.0
C1—N1—H1NB 111 (2) C6—C7—H7B 109.0
C5—N1—H1NB 106 (2) H7A—C7—H7B 107.8
H1NA—N1—H1NB 107 (3) C11—C8—C7 114.3 (2)
C13—N2—C9 112.4 (2) C11—C8—H8A 108.7
C13—N2—H2NA 108 (2) C7—C8—H8A 108.7
C9—N2—H2NA 110 (2) C11—C8—H8B 108.7
C13—N2—H2NB 105.2 (19) C7—C8—H8B 108.7
C9—N2—H2NB 109.9 (19) H8A—C8—H8B 107.6
H2NA—N2—H2NB 111 (3) N2—C9—C10 110.9 (2)
N1—C1—C2 111.3 (2) N2—C9—H9A 109.4
N1—C1—H1A 109.4 C10—C9—H9A 109.4
C2—C1—H1A 109.4 N2—C9—H9B 109.4
N1—C1—H1B 109.4 C10—C9—H9B 109.4
C2—C1—H1B 109.4 H9A—C9—H9B 108.0
H1A—C1—H1B 108.0 C9—C10—C11 111.7 (2)
C1—C2—C3 113.0 (2) C9—C10—H10A 109.3
C1—C2—H2A 109.0 C11—C10—H10A 109.3
C3—C2—H2A 109.0 C9—C10—H10B 109.3
C1—C2—H2B 109.0 C11—C10—H10B 109.3
C3—C2—H2B 109.0 H10A—C10—H10B 107.9
H2A—C2—H2B 107.8 C8—C11—C10 112.6 (2)
C6—C3—C2 112.0 (2) C8—C11—C12 112.5 (2)
C6—C3—C4 110.4 (2) C10—C11—C12 107.8 (2)
C2—C3—C4 109.0 (2) C8—C11—H11A 107.9
C6—C3—H3A 108.5 C10—C11—H11A 107.9
C2—C3—H3A 108.5 C12—C11—H11A 107.9
C4—C3—H3A 108.5 C13—C12—C11 112.3 (2)
C5—C4—C3 112.1 (2) C13—C12—H12A 109.2
C5—C4—H4A 109.2 C11—C12—H12A 109.2
C3—C4—H4A 109.2 C13—C12—H12B 109.2
C5—C4—H4B 109.2 C11—C12—H12B 109.2
C3—C4—H4B 109.2 H12A—C12—H12B 107.9
H4A—C4—H4B 107.9 N2—C13—C12 111.0 (2)
N1—C5—C4 109.9 (2) N2—C13—H13A 109.4
N1—C5—H5A 109.7 C12—C13—H13A 109.4
C4—C5—H5A 109.7 N2—C13—H13B 109.4
N1—C5—H5B 109.7 C12—C13—H13B 109.4
C4—C5—H5B 109.7 H13A—C13—H13B 108.0
H5A—C5—H5B 108.2

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1W—H1WA···O4i 0.85 1.98 2.819 (3) 168
O1W—H1WB···O3ii 0.85 1.97 2.799 (3) 165
N1—H1NA···O4iii 0.94 (3) 2.09 (3) 2.904 (3) 144 (3)
N1—H1NB···O3iv 0.85 (3) 1.91 (3) 2.711 (3) 157 (3)
N2—H2NA···O1v 0.88 (3) 1.83 (3) 2.704 (3) 177 (3)
N2—H2NB···O4vi 0.92 (3) 2.02 (3) 2.845 (4) 149 (3)

Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) −x+3/2, y−1/2, −z+1/2; (iii) −x, −y, −z+1; (iv) −x+1, −y, −z+1; (v) x+1, y, z; (vi) x+1/2, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FJ2138).

References

  1. Bergerhoff, G., Berndt, M. & Brandenburg, K. (1999). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808025300/fj2138sup1.cif

e-64-o1763-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808025300/fj2138Isup2.hkl

e-64-o1763-Isup2.hkl (143.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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