Abstract
A new benzimidazole compound, C12H14N2O2, has been synthesized by the reaction of 2-methyl-1H-benzimidazole and ethyl 2-bromoacetate. In the crystal structure, weak intermolecular C—H⋯N hydrogen bonds link the molecules into chains. π⋯π Contacts (centroid⋯centroid distance = 3.713 Å) are observed. A C—H⋯π interaction is also present. The N—C—C—O torsion angle is 178.4 (2)°.
Related literature
For related literature, see: Aaker et al. (2005 ▶).
Experimental
Crystal data
C12H14N2O2
M r = 218.25
Monoclinic,
a = 10.854 (2) Å
b = 4.7959 (10) Å
c = 11.842 (2) Å
β = 111.42 (3)°
V = 573.9 (2) Å3
Z = 2
Mo Kα radiation
μ = 0.09 mm−1
T = 295 (2) K
0.2 × 0.1 × 0.1 mm
Data collection
Rigaku SCXmini diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.990, T max = 1.000 (expected range = 0.981–0.991)
5696 measured reflections
1323 independent reflections
1085 reflections with I > 2σ(I)
R int = 0.033
Refinement
R[F 2 > 2σ(F 2)] = 0.041
wR(F 2) = 0.089
S = 1.12
1323 reflections
145 parameters
2 restraints
H-atom parameters constrained
Δρmax = 0.10 e Å−3
Δρmin = −0.15 e Å−3
Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S160053680802672X/wn2276sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680802672X/wn2276Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C9—H9B⋯N1i | 0.97 | 2.61 | 3.532 (3) | 159 |
| C8—H8C⋯Cg1ii | 0.97 | 2.74 | 3.633 (5) | 155 |
Symmetry codes: (i)
; (ii)
. Cg1 is the centroid of the imidazole ring.
Acknowledgments
The authors are grateful to the Starter Fund of Southeast University for financial support to buy the X-ray diffractometer.
supplementary crystallographic information
Comment
The molecular structure of the title compound is shown in Fig. 1. The benzimidazole system is essentially planar, with a dihedral angle of 0.88 (14)° between the planes of the benzene and imidazole rings. The N2—C9—C10—O2 torsion angle is 178.4 (2)°.
In the crystal structure, molecules are connected by weak intermolecular C—H···N hydrogen bonds, forming a polymeric chain (see Table 1 and Fig. 2). A C—H···π contact (see Table 1, Cg1 is the centroid of the imidazole ring) and π···π stacking (centroid···centroid distance = 3.713 Å) between neighboring benzimidazoles further stabilize the structure.
Experimental
The synthesis of 2-methyl-1H-benzimidazole was reported previously (Aaker et al., 2005). Ethyl 2-bromoacetate (1.65 g, 10 mmol) was added to a solution of 2-methyl-1H-benzimidazole (1.32 g, 10 mmol) and NaH (0.6 g, 26 mmol) in THF (30 ml). After the mixture was stirred for 12 h at room temperature, the precipitate was filtered off and the solution was evaporated in vacuum. The crude product was then crystallized from ethanol. Single crystals suitable for X-ray analysis were obtained by slow evaporation of an ethanol solution.
Refinement
All H atoms were positioned geometrically and were allowed to ride on the atoms to which they are bonded. C—H = 0.93–0.97 Å; Uiso(H) = xUeq(C), where x = 1.5 for methyl and x = 1.2 for all other H atoms.
Figures
Fig. 1.
The molecular structure of the title compound, with the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
A view of the packing of the title compound, with pi···pi stacking along the b axis. Dashed lines indicate hydrogen bonds.
Crystal data
| C12H14N2O2 | F000 = 232 |
| Mr = 218.25 | Dx = 1.263 Mg m−3 |
| Monoclinic, Pn | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: P -2yac | Cell parameters from 6060 reflections |
| a = 10.854 (2) Å | θ = 6.4–55.1º |
| b = 4.7959 (10) Å | µ = 0.09 mm−1 |
| c = 11.842 (2) Å | T = 295 (2) K |
| β = 111.42 (3)º | Prism, colorless |
| V = 573.9 (2) Å3 | 0.2 × 0.1 × 0.1 mm |
| Z = 2 |
Data collection
| Rigaku SCXmini diffractometer | 1323 independent reflections |
| Radiation source: fine-focus sealed tube | 1085 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.033 |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5º |
| T = 294(2) K | θmin = 3.2º |
| CCD_Profile_fitting scans | h = −14→14 |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | k = −6→6 |
| Tmin = 0.990, Tmax = 1.000 | l = −15→15 |
| 5696 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
| wR(F2) = 0.090 | w = 1/[σ2(Fo2) + (0.0435P)2 + 0.018P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.12 | (Δ/σ)max < 0.001 |
| 1323 reflections | Δρmax = 0.10 e Å−3 |
| 145 parameters | Δρmin = −0.15 e Å−3 |
| 2 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O2 | 0.14135 (17) | 0.1457 (4) | 0.20123 (14) | 0.0515 (5) | |
| C5 | 0.1006 (3) | −0.1654 (5) | −0.2701 (2) | 0.0449 (6) | |
| C1 | 0.3029 (2) | −0.2567 (6) | −0.0948 (2) | 0.0471 (6) | |
| H1A | 0.3572 | −0.2219 | −0.0148 | 0.056* | |
| N2 | 0.12080 (19) | 0.0836 (4) | −0.10788 (17) | 0.0412 (5) | |
| C10 | 0.1019 (2) | 0.0363 (5) | 0.0906 (2) | 0.0413 (5) | |
| C9 | 0.1639 (2) | 0.1907 (6) | 0.0146 (2) | 0.0425 (6) | |
| H9A | 0.1409 | 0.3867 | 0.0121 | 0.051* | |
| H9B | 0.2594 | 0.1753 | 0.0518 | 0.051* | |
| N1 | −0.0107 (2) | 0.0004 (5) | −0.30007 (18) | 0.0497 (6) | |
| O1 | 0.0293 (2) | −0.1587 (4) | 0.05777 (18) | 0.0685 (6) | |
| C4 | 0.1383 (3) | −0.3615 (6) | −0.3381 (2) | 0.0576 (8) | |
| H4A | 0.0850 | −0.3960 | −0.4184 | 0.069* | |
| C6 | 0.1845 (2) | −0.1163 (5) | −0.1499 (2) | 0.0390 (6) | |
| C7 | 0.0038 (2) | 0.1447 (5) | −0.2017 (2) | 0.0454 (6) | |
| C2 | 0.3361 (3) | −0.4510 (7) | −0.1649 (2) | 0.0540 (7) | |
| H2A | 0.4147 | −0.5501 | −0.1311 | 0.065* | |
| C3 | 0.2550 (3) | −0.5027 (7) | −0.2850 (3) | 0.0596 (7) | |
| H3A | 0.2805 | −0.6350 | −0.3296 | 0.072* | |
| C12 | 0.1640 (3) | 0.1400 (8) | 0.4080 (3) | 0.0737 (10) | |
| H12A | 0.1322 | 0.0602 | 0.4666 | 0.111* | |
| H12B | 0.1510 | 0.3383 | 0.4051 | 0.111* | |
| H12C | 0.2565 | 0.0999 | 0.4306 | 0.111* | |
| C8 | −0.0919 (3) | 0.3503 (6) | −0.1883 (3) | 0.0598 (8) | |
| H8A | −0.1666 | 0.3635 | −0.2632 | 0.090* | |
| H8B | −0.0500 | 0.5293 | −0.1683 | 0.090* | |
| H8C | −0.1212 | 0.2914 | −0.1248 | 0.090* | |
| C11 | 0.0894 (3) | 0.0179 (7) | 0.2857 (3) | 0.0617 (8) | |
| H11A | 0.1016 | −0.1826 | 0.2873 | 0.074* | |
| H11B | −0.0044 | 0.0568 | 0.2617 | 0.074* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O2 | 0.0623 (12) | 0.0550 (11) | 0.0392 (10) | −0.0084 (9) | 0.0209 (9) | −0.0061 (8) |
| C5 | 0.0512 (15) | 0.0505 (15) | 0.0271 (11) | −0.0146 (12) | 0.0075 (11) | 0.0011 (11) |
| C1 | 0.0448 (14) | 0.0577 (16) | 0.0327 (12) | −0.0087 (12) | 0.0070 (10) | −0.0014 (12) |
| N2 | 0.0423 (11) | 0.0447 (12) | 0.0312 (10) | −0.0065 (9) | 0.0069 (8) | −0.0003 (9) |
| C10 | 0.0419 (13) | 0.0418 (13) | 0.0383 (13) | 0.0019 (11) | 0.0126 (10) | −0.0012 (11) |
| C9 | 0.0452 (14) | 0.0437 (15) | 0.0345 (12) | −0.0095 (11) | 0.0095 (10) | −0.0074 (10) |
| N1 | 0.0493 (12) | 0.0502 (13) | 0.0363 (12) | −0.0092 (11) | 0.0000 (9) | 0.0043 (10) |
| O1 | 0.0865 (15) | 0.0659 (14) | 0.0564 (12) | −0.0334 (12) | 0.0301 (11) | −0.0148 (10) |
| C4 | 0.0744 (19) | 0.0620 (18) | 0.0291 (13) | −0.0186 (16) | 0.0102 (13) | −0.0110 (13) |
| C6 | 0.0432 (13) | 0.0434 (14) | 0.0283 (12) | −0.0123 (11) | 0.0104 (10) | 0.0010 (10) |
| C7 | 0.0426 (14) | 0.0450 (14) | 0.0395 (14) | −0.0087 (12) | 0.0041 (11) | 0.0077 (11) |
| C2 | 0.0499 (15) | 0.0627 (19) | 0.0483 (17) | 0.0003 (14) | 0.0166 (13) | −0.0013 (14) |
| C3 | 0.0726 (19) | 0.0613 (18) | 0.0468 (17) | −0.0082 (15) | 0.0242 (15) | −0.0129 (14) |
| C12 | 0.083 (2) | 0.095 (3) | 0.0472 (17) | 0.0068 (19) | 0.0283 (16) | 0.0017 (17) |
| C8 | 0.0515 (16) | 0.0546 (16) | 0.0659 (19) | 0.0001 (14) | 0.0127 (14) | 0.0089 (14) |
| C11 | 0.0716 (19) | 0.073 (2) | 0.0508 (18) | −0.0011 (16) | 0.0346 (15) | −0.0009 (15) |
Geometric parameters (Å, °)
| O2—C10 | 1.329 (3) | C4—C3 | 1.370 (5) |
| O2—C11 | 1.451 (3) | C4—H4A | 0.9300 |
| C5—N1 | 1.380 (4) | C7—C8 | 1.482 (4) |
| C5—C4 | 1.393 (4) | C2—C3 | 1.395 (4) |
| C5—C6 | 1.401 (3) | C2—H2A | 0.9300 |
| C1—C2 | 1.380 (4) | C3—H3A | 0.9300 |
| C1—C6 | 1.385 (4) | C12—C11 | 1.497 (4) |
| C1—H1A | 0.9300 | C12—H12A | 0.9600 |
| N2—C6 | 1.376 (3) | C12—H12B | 0.9600 |
| N2—C7 | 1.379 (3) | C12—H12C | 0.9600 |
| N2—C9 | 1.446 (3) | C8—H8A | 0.9600 |
| C10—O1 | 1.193 (3) | C8—H8B | 0.9600 |
| C10—C9 | 1.502 (3) | C8—H8C | 0.9600 |
| C9—H9A | 0.9700 | C11—H11A | 0.9700 |
| C9—H9B | 0.9700 | C11—H11B | 0.9700 |
| N1—C7 | 1.315 (3) | ||
| C10—O2—C11 | 116.5 (2) | N1—C7—C8 | 125.7 (2) |
| N1—C5—C4 | 130.8 (2) | N2—C7—C8 | 122.1 (2) |
| N1—C5—C6 | 110.3 (2) | C1—C2—C3 | 121.8 (3) |
| C4—C5—C6 | 118.8 (3) | C1—C2—H2A | 119.1 |
| C2—C1—C6 | 116.5 (2) | C3—C2—H2A | 119.1 |
| C2—C1—H1A | 121.7 | C4—C3—C2 | 120.9 (3) |
| C6—C1—H1A | 121.7 | C4—C3—H3A | 119.5 |
| C6—N2—C7 | 107.06 (19) | C2—C3—H3A | 119.5 |
| C6—N2—C9 | 126.07 (19) | C11—C12—H12A | 109.5 |
| C7—N2—C9 | 126.7 (2) | C11—C12—H12B | 109.5 |
| O1—C10—O2 | 124.6 (2) | H12A—C12—H12B | 109.5 |
| O1—C10—C9 | 125.3 (2) | C11—C12—H12C | 109.5 |
| O2—C10—C9 | 110.04 (19) | H12A—C12—H12C | 109.5 |
| N2—C9—C10 | 112.00 (19) | H12B—C12—H12C | 109.5 |
| N2—C9—H9A | 109.2 | C7—C8—H8A | 109.5 |
| C10—C9—H9A | 109.2 | C7—C8—H8B | 109.5 |
| N2—C9—H9B | 109.2 | H8A—C8—H8B | 109.5 |
| C10—C9—H9B | 109.2 | C7—C8—H8C | 109.5 |
| H9A—C9—H9B | 107.9 | H8A—C8—H8C | 109.5 |
| C7—N1—C5 | 105.4 (2) | H8B—C8—H8C | 109.5 |
| C3—C4—C5 | 119.0 (3) | O2—C11—C12 | 107.0 (3) |
| C3—C4—H4A | 120.5 | O2—C11—H11A | 110.3 |
| C5—C4—H4A | 120.5 | C12—C11—H11A | 110.3 |
| N2—C6—C1 | 132.1 (2) | O2—C11—H11B | 110.3 |
| N2—C6—C5 | 105.0 (2) | C12—C11—H11B | 110.3 |
| C1—C6—C5 | 122.9 (2) | H11A—C11—H11B | 108.6 |
| N1—C7—N2 | 112.2 (2) | ||
| C11—O2—C10—O1 | −1.1 (4) | C2—C1—C6—C5 | 0.2 (3) |
| C11—O2—C10—C9 | 180.0 (2) | N1—C5—C6—N2 | 0.1 (3) |
| C6—N2—C9—C10 | −93.6 (3) | C4—C5—C6—N2 | −179.8 (2) |
| C7—N2—C9—C10 | 80.8 (3) | N1—C5—C6—C1 | 179.1 (2) |
| O1—C10—C9—N2 | 2.6 (4) | C4—C5—C6—C1 | −0.8 (4) |
| O2—C10—C9—N2 | −178.4 (2) | C5—N1—C7—N2 | 0.6 (3) |
| C4—C5—N1—C7 | 179.5 (3) | C5—N1—C7—C8 | −179.1 (2) |
| C6—C5—N1—C7 | −0.4 (3) | C6—N2—C7—N1 | −0.6 (3) |
| N1—C5—C4—C3 | −179.0 (3) | C9—N2—C7—N1 | −175.9 (2) |
| C6—C5—C4—C3 | 0.9 (4) | C6—N2—C7—C8 | 179.1 (2) |
| C7—N2—C6—C1 | −178.6 (3) | C9—N2—C7—C8 | 3.9 (4) |
| C9—N2—C6—C1 | −3.3 (4) | C6—C1—C2—C3 | 0.2 (4) |
| C7—N2—C6—C5 | 0.3 (2) | C5—C4—C3—C2 | −0.5 (4) |
| C9—N2—C6—C5 | 175.6 (2) | C1—C2—C3—C4 | −0.1 (4) |
| C2—C1—C6—N2 | 179.0 (3) | C10—O2—C11—C12 | 170.5 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C9—H9B···N1i | 0.97 | 2.61 | 3.532 (3) | 159 |
| C8—H8C···Cg1ii | 0.97 | 2.74 | 3.633 (5) | 155 |
Symmetry codes: (i) x+1/2, −y, z+1/2; (ii) x, y−1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: WN2276).
References
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S160053680802672X/wn2276sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680802672X/wn2276Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


