Abstract
In the title compound, C18H17BrN2O2, which is a potential human immunodeficiency virus type 1 (HIV-1) non-nucleoside reverse transcriptase inhibitor, the pyrrolidine ring exhibits an envelope conformation. In the crystal structure, intermolecular N—H⋯O hydrogen bonds [N⋯O = 2.861 (3) Å] link the molecules into centrosymmetric dimers.
Related literature
For related crystal structures, see: Karapetyan et al. (2002 ▶); Tamazyan et al. (2002 ▶, 2007 ▶). For details of the synthesis, see: Martirosyan et al. (2000 ▶, 2004 ▶). For potential pharmacological applications, see: De Clercq (1996 ▶).
Experimental
Crystal data
C18H17BrN2O2
M r = 373.25
Monoclinic,
a = 9.5707 (19) Å
b = 13.738 (3) Å
c = 13.302 (3) Å
β = 96.99 (2)°
V = 1736.0 (6) Å3
Z = 4
Mo Kα radiation
μ = 2.38 mm−1
T = 260 (2) K
0.14 mm (radius)
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: for a sphere (SHELXTL; Sheldrick, 2008 ▶) T min = 0.612, T max = 0.617
8356 measured reflections
4180 independent reflections
2941 reflections with I > 2σ(I)
R int = 0.050
3 standard reflections frequency: 180 min intensity decay: none
Refinement
R[F 2 > 2σ(F 2)] = 0.046
wR(F 2) = 0.118
S = 1.02
4180 reflections
216 parameters
10 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.87 e Å−3
Δρmin = −0.89 e Å−3
Data collection: DATACOL in CAD-4 (Enraf–Nonius, 1988 ▶); cell refinement: LS in CAD-4; data reduction: HELENA (Spek, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808003954/cv2386sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003954/cv2386Isup2.hkl
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N7—H7b⋯O16 | 0.83 (2) | 1.95 (3) | 2.726 (3) | 155 (3) |
N7—H7a⋯O8i | 0.86 (3) | 2.00 (3) | 2.861 (3) | 176 (3) |
Symmetry code: (i) .
Acknowledgments
This work was supported by the Armenian Science and Education Foundation (ANSEF) (grant No. PS-chemorg-907).
supplementary crystallographic information
Comment
The title compound, (I), belongs to a family of non-nucleoside reverse transcriptase inhibitors (NNRTIs), which exhibit potential HIV-1 RT inhibition properties (De Clercq, 1996).
In (I) (Fig. 1), all bond lengths and angles are in good agreement with those observed in the related compounds (Karapetyan et al., 2002; Tamazyan et al., 2002, 2007). Both H atoms of amide group, H7b and H7a, respectively, are involved in intra- and intermolecular N—H···O hydrogen bonds (Table 1). The latter one links the molecules into centrosymmetric dimers (Fig. 2).
Experimental
The title compound was synthesized by cycloalkylation of N1-(3-chloropropyl)-N1-cyano(phenyl)methyl-4-bromobenzamide in phase transfer catalyses condition to 1-(4-bromobenzoyl)-2-phenyl-2-pyrrolidinecarbonitrile and then by hydrolizes with concentric sulfuric acid (Martirosyan et al., 2000, 2004). The compound as synthesized is a racemic mixture of optical isomers (R and S) of 1-(4-bromobenzoyl)-2-phenyl-2-pyrrolidinecarboxamide molecule. The crystals were grown from methanol solution. The suitable sample with spherical shape of the size ~0.28 mm was prepared and selected for X-ray diffraction experiment.
Refinement
All H atoms were located on a difference map. Atoms H7a and H7b were refined isotropically. C-bound H atoms were placed in idealized positions (C—H 0.93–0.97 Å) and refined as riding, with Uiso = 1.2 Ueq(C).
Figures
Crystal data
C18H17BrN2O2 | F000 = 760 |
Mr = 373.25 | Dx = 1.428 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 9.5707 (19) Å | θ = 13–16º |
b = 13.738 (3) Å | µ = 2.38 mm−1 |
c = 13.302 (3) Å | T = 260 (2) K |
β = 96.99 (2)º | Spherical, colourless |
V = 1736.0 (6) Å3 | 0.28 × 0.28 × 0.28 × 0.14 (radius) mm |
Z = 4 |
Data collection
Enraf–Nonius CAD-4 diffractometer | Rint = 0.050 |
Radiation source: fine-focus sealed tube | θmax = 28.0º |
Monochromator: graphite | θmin = 2.1º |
T = 260(2) K | h = −12→12 |
θ/2θ scans | k = 0→18 |
Absorption correction: for a sphere(SHELXTL; Sheldrick, 2008) | l = −17→17 |
Tmin = 0.612, Tmax = 0.617 | 3 standard reflections |
8356 measured reflections | every 180 min |
4180 independent reflections | intensity decay: none |
2941 reflections with I > 2σ(I) |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.119 | w = 1/[σ2(Fo2) + (0.0458P)2 + 1.2016P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.001 |
4180 reflections | Δρmax = 0.87 e Å−3 |
216 parameters | Δρmin = −0.89 e Å−3 |
10 restraints | Extinction correction: none |
Primary atom site location: structure-invariant direct methods |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Br1 | 0.68968 (4) | 1.01480 (3) | 0.85408 (3) | 0.07187 (17) | |
C1 | −0.0555 (2) | 0.71666 (16) | 0.64026 (16) | 0.0217 (4) | |
N2 | 0.08435 (19) | 0.75423 (14) | 0.68588 (13) | 0.0230 (4) | |
C3 | 0.1138 (3) | 0.7265 (2) | 0.79443 (18) | 0.0372 (6) | |
H3A | 0.1112 | 0.7831 | 0.8379 | 0.045* | |
H3B | 0.2051 | 0.6955 | 0.8084 | 0.045* | |
C4 | −0.0033 (3) | 0.65609 (19) | 0.80987 (18) | 0.0330 (5) | |
H4A | −0.0257 | 0.6581 | 0.8790 | 0.040* | |
H4B | 0.0215 | 0.5900 | 0.7935 | 0.040* | |
C5 | −0.1249 (3) | 0.69388 (18) | 0.73599 (17) | 0.0277 (5) | |
H5A | −0.1656 | 0.7520 | 0.7620 | 0.033* | |
H5B | −0.1977 | 0.6449 | 0.7224 | 0.033* | |
C6 | −0.0375 (2) | 0.62094 (16) | 0.58089 (16) | 0.0225 (5) | |
N7 | 0.0475 (3) | 0.62518 (17) | 0.50977 (16) | 0.0310 (5) | |
H7A | 0.060 (3) | 0.572 (2) | 0.477 (2) | 0.026 (7)* | |
H7B | 0.089 (3) | 0.677 (2) | 0.502 (2) | 0.038 (8)* | |
O8 | −0.1011 (2) | 0.54709 (12) | 0.60012 (14) | 0.0357 (4) | |
C9 | −0.1430 (2) | 0.78995 (16) | 0.57304 (17) | 0.0245 (5) | |
C10 | −0.1242 (3) | 0.88979 (18) | 0.5831 (2) | 0.0333 (5) | |
H10 | −0.0515 | 0.9139 | 0.6291 | 0.040* | |
C11 | −0.2120 (3) | 0.9539 (2) | 0.5257 (2) | 0.0448 (7) | |
H11 | −0.1975 | 1.0206 | 0.5328 | 0.054* | |
C12 | −0.3217 (3) | 0.9190 (2) | 0.4578 (2) | 0.0484 (8) | |
H12 | −0.3811 | 0.9621 | 0.4193 | 0.058* | |
C13 | −0.3422 (3) | 0.8208 (2) | 0.4475 (2) | 0.0454 (7) | |
H13 | −0.4160 | 0.7973 | 0.4021 | 0.055* | |
C14 | −0.2534 (3) | 0.75578 (19) | 0.50447 (19) | 0.0341 (6) | |
H14 | −0.2680 | 0.6891 | 0.4966 | 0.041* | |
C15 | 0.1780 (2) | 0.79997 (16) | 0.63414 (17) | 0.0244 (5) | |
O16 | 0.16487 (18) | 0.80521 (12) | 0.54045 (12) | 0.0298 (4) | |
C17 | 0.3019 (2) | 0.84793 (17) | 0.69371 (18) | 0.0264 (5) | |
C18 | 0.4350 (3) | 0.8311 (2) | 0.6659 (2) | 0.0356 (6) | |
H18 | 0.4463 | 0.7867 | 0.6148 | 0.043* | |
C19 | 0.5505 (3) | 0.8797 (2) | 0.7137 (2) | 0.0441 (7) | |
H19 | 0.6397 | 0.8679 | 0.6955 | 0.053* | |
C20 | 0.5317 (3) | 0.9461 (2) | 0.7890 (2) | 0.0412 (7) | |
C21 | 0.4003 (3) | 0.9652 (2) | 0.8166 (2) | 0.0410 (6) | |
H21 | 0.3892 | 1.0110 | 0.8666 | 0.049* | |
C22 | 0.2853 (3) | 0.91537 (19) | 0.7691 (2) | 0.0337 (6) | |
H22 | 0.1962 | 0.9271 | 0.7877 | 0.040* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0470 (2) | 0.0818 (3) | 0.0793 (3) | −0.02922 (18) | −0.02262 (18) | 0.0072 (2) |
C1 | 0.0249 (10) | 0.0220 (11) | 0.0184 (10) | −0.0011 (8) | 0.0038 (8) | −0.0017 (8) |
N2 | 0.0263 (9) | 0.0274 (10) | 0.0154 (9) | −0.0030 (8) | 0.0033 (7) | −0.0008 (7) |
C3 | 0.0455 (15) | 0.0498 (16) | 0.0152 (11) | −0.0080 (12) | −0.0002 (10) | 0.0018 (11) |
C4 | 0.0441 (14) | 0.0370 (14) | 0.0188 (11) | −0.0031 (11) | 0.0070 (10) | 0.0039 (10) |
C5 | 0.0329 (12) | 0.0292 (12) | 0.0229 (11) | 0.0000 (10) | 0.0108 (9) | −0.0012 (9) |
C6 | 0.0273 (11) | 0.0230 (11) | 0.0170 (10) | 0.0020 (9) | 0.0014 (8) | 0.0005 (8) |
N7 | 0.0464 (13) | 0.0213 (11) | 0.0280 (11) | −0.0039 (10) | 0.0159 (9) | −0.0048 (9) |
O8 | 0.0492 (11) | 0.0245 (9) | 0.0365 (10) | −0.0080 (8) | 0.0176 (8) | −0.0047 (7) |
C9 | 0.0266 (11) | 0.0263 (11) | 0.0216 (11) | 0.0033 (9) | 0.0070 (9) | 0.0019 (9) |
C10 | 0.0359 (13) | 0.0281 (13) | 0.0367 (14) | 0.0033 (10) | 0.0076 (11) | 0.0004 (11) |
C11 | 0.0519 (17) | 0.0289 (13) | 0.0556 (19) | 0.0102 (12) | 0.0146 (15) | 0.0123 (13) |
C12 | 0.0484 (17) | 0.0498 (18) | 0.0472 (17) | 0.0196 (14) | 0.0065 (14) | 0.0200 (14) |
C13 | 0.0398 (15) | 0.0563 (19) | 0.0375 (16) | 0.0111 (13) | −0.0064 (12) | 0.0058 (13) |
C14 | 0.0359 (13) | 0.0332 (13) | 0.0324 (13) | 0.0040 (11) | 0.0011 (11) | −0.0017 (11) |
C15 | 0.0282 (11) | 0.0221 (11) | 0.0237 (11) | 0.0022 (9) | 0.0063 (9) | −0.0015 (9) |
O16 | 0.0383 (9) | 0.0314 (9) | 0.0208 (8) | −0.0058 (7) | 0.0078 (7) | −0.0010 (7) |
C17 | 0.0257 (11) | 0.0270 (11) | 0.0267 (11) | 0.0000 (9) | 0.0042 (9) | 0.0001 (10) |
C18 | 0.0310 (13) | 0.0372 (14) | 0.0398 (15) | 0.0024 (11) | 0.0095 (11) | −0.0016 (11) |
C19 | 0.0244 (12) | 0.0528 (17) | 0.0552 (18) | 0.0022 (11) | 0.0060 (12) | 0.0068 (15) |
C20 | 0.0299 (13) | 0.0445 (15) | 0.0453 (16) | −0.0118 (11) | −0.0107 (11) | 0.0070 (13) |
C21 | 0.0430 (15) | 0.0394 (15) | 0.0392 (15) | −0.0072 (12) | −0.0001 (12) | −0.0086 (12) |
C22 | 0.0287 (12) | 0.0357 (13) | 0.0374 (14) | −0.0013 (10) | 0.0064 (10) | −0.0093 (11) |
Geometric parameters (Å, °)
Br1—C20 | 1.899 (3) | C10—C11 | 1.382 (4) |
C1—N2 | 1.493 (3) | C10—H10 | 0.9300 |
C1—C9 | 1.527 (3) | C11—C12 | 1.385 (5) |
C1—C5 | 1.538 (3) | C11—H11 | 0.9300 |
C1—C6 | 1.554 (3) | C12—C13 | 1.368 (5) |
N2—C15 | 1.350 (3) | C12—H12 | 0.9300 |
N2—C3 | 1.487 (3) | C13—C14 | 1.392 (4) |
C3—C4 | 1.513 (4) | C13—H13 | 0.9300 |
C3—H3A | 0.9700 | C14—H14 | 0.9300 |
C3—H3B | 0.9700 | C15—O16 | 1.239 (3) |
C4—C5 | 1.520 (3) | C15—C17 | 1.496 (3) |
C4—H4A | 0.9700 | C17—C18 | 1.388 (3) |
C4—H4B | 0.9700 | C17—C22 | 1.389 (3) |
C5—H5A | 0.9700 | C18—C19 | 1.378 (4) |
C5—H5B | 0.9700 | C18—H18 | 0.9300 |
C6—O8 | 1.226 (3) | C19—C20 | 1.383 (4) |
C6—N7 | 1.321 (3) | C19—H19 | 0.9300 |
N7—H7A | 0.86 (3) | C20—C21 | 1.378 (4) |
N7—H7B | 0.83 (3) | C21—C22 | 1.383 (4) |
C9—C10 | 1.388 (3) | C21—H21 | 0.9300 |
C9—C14 | 1.391 (3) | C22—H22 | 0.9300 |
N2—C1—C9 | 114.23 (18) | C11—C10—C9 | 121.0 (3) |
N2—C1—C5 | 100.93 (17) | C11—C10—H10 | 119.5 |
C9—C1—C5 | 110.99 (18) | C9—C10—H10 | 119.5 |
N2—C1—C6 | 110.43 (17) | C10—C11—C12 | 120.1 (3) |
C9—C1—C6 | 110.32 (17) | C10—C11—H11 | 120.0 |
C5—C1—C6 | 109.54 (18) | C12—C11—H11 | 120.0 |
C15—N2—C3 | 123.7 (2) | C13—C12—C11 | 119.6 (3) |
C15—N2—C1 | 124.89 (18) | C13—C12—H12 | 120.2 |
C3—N2—C1 | 111.14 (18) | C11—C12—H12 | 120.2 |
N2—C3—C4 | 103.87 (19) | C12—C13—C14 | 120.6 (3) |
N2—C3—H3A | 111.0 | C12—C13—H13 | 119.7 |
C4—C3—H3A | 111.0 | C14—C13—H13 | 119.7 |
N2—C3—H3B | 111.0 | C9—C14—C13 | 120.3 (3) |
C4—C3—H3B | 111.0 | C9—C14—H14 | 119.8 |
H3A—C3—H3B | 109.0 | C13—C14—H14 | 119.8 |
C3—C4—C5 | 102.4 (2) | O16—C15—N2 | 123.2 (2) |
C3—C4—H4A | 111.3 | O16—C15—C17 | 118.9 (2) |
C5—C4—H4A | 111.3 | N2—C15—C17 | 117.9 (2) |
C3—C4—H4B | 111.3 | C18—C17—C22 | 119.5 (2) |
C5—C4—H4B | 111.3 | C18—C17—C15 | 118.6 (2) |
H4A—C4—H4B | 109.2 | C22—C17—C15 | 121.5 (2) |
C4—C5—C1 | 103.39 (19) | C19—C18—C17 | 120.5 (3) |
C4—C5—H5A | 111.1 | C19—C18—H18 | 119.8 |
C1—C5—H5A | 111.1 | C17—C18—H18 | 119.8 |
C4—C5—H5B | 111.1 | C18—C19—C20 | 119.1 (3) |
C1—C5—H5B | 111.1 | C18—C19—H19 | 120.5 |
H5A—C5—H5B | 109.1 | C20—C19—H19 | 120.5 |
O8—C6—N7 | 123.4 (2) | C21—C20—C19 | 121.5 (2) |
O8—C6—C1 | 120.3 (2) | C21—C20—Br1 | 119.0 (2) |
N7—C6—C1 | 116.3 (2) | C19—C20—Br1 | 119.5 (2) |
C6—N7—H7A | 117.1 (18) | C20—C21—C22 | 119.0 (3) |
C6—N7—H7B | 119 (2) | C20—C21—H21 | 120.5 |
H7A—N7—H7B | 124 (3) | C22—C21—H21 | 120.5 |
C10—C9—C14 | 118.4 (2) | C21—C22—C17 | 120.4 (2) |
C10—C9—C1 | 122.7 (2) | C21—C22—H22 | 119.8 |
C14—C9—C1 | 118.7 (2) | C17—C22—H22 | 119.8 |
C9—C1—N2—C15 | −49.1 (3) | C1—C9—C10—C11 | −175.3 (2) |
C5—C1—N2—C15 | −168.3 (2) | C9—C10—C11—C12 | 0.7 (4) |
C6—C1—N2—C15 | 75.9 (3) | C10—C11—C12—C13 | −0.2 (5) |
C9—C1—N2—C3 | 136.3 (2) | C11—C12—C13—C14 | −0.3 (5) |
C5—C1—N2—C3 | 17.2 (2) | C10—C9—C14—C13 | 0.1 (4) |
C6—C1—N2—C3 | −98.6 (2) | C1—C9—C14—C13 | 175.0 (2) |
C15—N2—C3—C4 | −165.7 (2) | C12—C13—C14—C9 | 0.3 (4) |
C1—N2—C3—C4 | 9.0 (3) | C3—N2—C15—O16 | 164.8 (2) |
N2—C3—C4—C5 | −31.7 (3) | C1—N2—C15—O16 | −9.1 (3) |
C3—C4—C5—C1 | 43.1 (2) | C3—N2—C15—C17 | −16.3 (3) |
N2—C1—C5—C4 | −36.6 (2) | C1—N2—C15—C17 | 169.74 (19) |
C9—C1—C5—C4 | −158.09 (19) | O16—C15—C17—C18 | −48.8 (3) |
C6—C1—C5—C4 | 79.8 (2) | N2—C15—C17—C18 | 132.3 (2) |
N2—C1—C6—O8 | 125.4 (2) | O16—C15—C17—C22 | 125.0 (3) |
C9—C1—C6—O8 | −107.4 (2) | N2—C15—C17—C22 | −53.9 (3) |
C5—C1—C6—O8 | 15.1 (3) | C22—C17—C18—C19 | 1.0 (4) |
N2—C1—C6—N7 | −55.3 (3) | C15—C17—C18—C19 | 174.9 (2) |
C9—C1—C6—N7 | 71.9 (3) | C17—C18—C19—C20 | −0.6 (4) |
C5—C1—C6—N7 | −165.6 (2) | C18—C19—C20—C21 | −0.5 (4) |
N2—C1—C9—C10 | −23.9 (3) | C18—C19—C20—Br1 | −179.2 (2) |
C5—C1—C9—C10 | 89.4 (3) | C19—C20—C21—C22 | 1.2 (4) |
C6—C1—C9—C10 | −149.0 (2) | Br1—C20—C21—C22 | 179.9 (2) |
N2—C1—C9—C14 | 161.4 (2) | C20—C21—C22—C17 | −0.8 (4) |
C5—C1—C9—C14 | −85.3 (3) | C18—C17—C22—C21 | −0.3 (4) |
C6—C1—C9—C14 | 36.3 (3) | C15—C17—C22—C21 | −174.0 (2) |
C14—C9—C10—C11 | −0.6 (4) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7b···O16 | 0.83 (2) | 1.95 (3) | 2.726 (3) | 155 (3) |
N7—H7a···O8i | 0.86 (3) | 2.00 (3) | 2.861 (3) | 176 (3) |
Symmetry codes: (i) −x, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2386).
References
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Associated Data
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Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808003954/cv2386sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003954/cv2386Isup2.hkl