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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Feb 13;64(Pt 3):o587. doi: 10.1107/S160053680800408X

7-Chloro-11a-phenyl-2,3,5,10,11,11a-hexa­hydro-1H-pyrrolo[2,1-c][1,4]benzodiazepine-5,11-dione

Rafael Tamazyan a,*, Armen Ayvazyan a, Ashot Martirosyan b, Gohar Harutyunyan b, Vahan Martirosyan b
PMCID: PMC2960833  PMID: 21201925

Abstract

The title compound, C18H15ClN2O2, is a potential human immunodeficiency virus type-1 (HIV-1) non-nucleoside reverse transcriptase inhibitor. The pyrrolidine ring adopts an envelope and the diazepine ring a boat conformation. In the crystal structure, two isomers (R and S) form centrosymmetric dimers via N—H⋯O hydrogen bonds.

Related literature

For details of the pharmacological properties of this family of compounds, see: De Clercq (1996). For the crystal structures of some analogues of the title compound, see: Karapetyan et al. (2002); Tamazyan et al. (2002, 2007). For reference structural data, see Allen et al. (1987).graphic file with name e-64-0o587-scheme1.jpg

Experimental

Crystal data

  • C18H15ClN2O2

  • M r = 326.77

  • Triclinic, Inline graphic

  • a = 8.9749 (18) Å

  • b = 9.2184 (18) Å

  • c = 9.912 (2) Å

  • α = 86.90 (3)°

  • β = 71.35 (3)°

  • γ = 88.27 (3)°

  • V = 775.8 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.26 mm−1

  • T = 293 (2) K

  • 0.35 × 0.32 × 0.28 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: none

  • 7347 measured reflections

  • 4514 independent reflections

  • 3148 reflections with I > 2σ(I)

  • R int = 0.035

  • 3 standard reflections frequency: 180 min intensity decay: none

Refinement

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.121

  • S = 1.02

  • 4514 reflections

  • 268 parameters

  • All H-atom parameters refined

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.31 e Å−3

Data collection: DATCOL in CAD-4 (Enraf–Nonius, 1988); cell refinement: LS in CAD-4; data reduction: HELENA (Spek, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800408X/sj2462sup1.cif

e-64-0o587-sup1.cif (20.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680800408X/sj2462Isup2.hkl

e-64-0o587-Isup2.hkl (221.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N4—H4⋯O12i 0.85 (2) 2.35 (2) 2.997 (2) 133 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

This research was carried out under the framework of the Armenian Science and Education Foundation (ANSEF grant No. PS-chemorg-907). The authors express their thanks to ANSEF.

supplementary crystallographic information

Comment

Interest in X-ray structural investigation of title compound, (I), Fig. 1, is stimulated by its potentially HIV-1 RT inhibition properties. These compounds belong to a family of non-nucleoside reverse transcriptase inhibitors (NNRTIs).

All intramolecular interatomic distances in molecule are in good agreement with their mean statistical values (Allen et al., 1987). In the crystal structure dimers are formed by (R and S) optical isomers of molecules of (I) via O12···H4i—N4i and O12i···H4—N4 double hydrogen bonding (Table 1, Fig.2).

Experimental

A solution of 2-phenyl-2-pyrrolidinecarboxylic acid (0.01 mol) and 6-chloro-1,4-dihydro-2H-3,1-benzoxazine-2,4-dione (0.01 mol) in dry DMF (5 ml) was boiled for 4 h. After cooling in an ice bath the title compound formed as a colourless precipitate and was separated by filtration and washed with ethylacetate. The compound as synthesized was a racemic mixture. Crystals were grown from an ethanol solution of the compound.

Refinement

Hydrogen atoms were located in a difference map and refined freely with isotropic thermal parameters.

Figures

Fig. 1.

Fig. 1.

A view of molecule with the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are omitted for clarity.

Fig. 2.

Fig. 2.

The formation dimers of molecules via hydrogen bonding. For clarity only those H atoms participating in hydrogen bonding are depicted. Symmetry code: (i) 2 - x, -y, 2 - z

Crystal data

C18H15ClN2O2 Z = 2
Mr = 326.77 F(000) = 340
Triclinic, P1 Dx = 1.399 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.9749 (18) Å Cell parameters from 22 reflections
b = 9.2184 (18) Å θ = 12.6–16.6°
c = 9.912 (2) Å µ = 0.26 mm1
α = 86.90 (3)° T = 293 K
β = 71.35 (3)° Prism, colourless
γ = 88.27 (3)° 0.35 × 0.32 × 0.28 mm
V = 775.8 (3) Å3

Data collection

Enraf–Nonius CAD-4 diffractometer Rint = 0.035
Radiation source: fine-focus sealed tube θmax = 30.0°, θmin = 2.2°
graphite h = −12→12
θ/2θ scans k = −12→12
7347 measured reflections l = −13→13
4514 independent reflections 3 standard reflections every 180 min
3148 reflections with I > 2σ(I) intensity decay: none

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046 Hydrogen site location: difference Fourier map
wR(F2) = 0.121 All H-atom parameters refined
S = 1.02 w = 1/[σ2(Fo2) + (0.0496P)2 + 0.2193P] where P = (Fo2 + 2Fc2)/3
4514 reflections (Δ/σ)max < 0.001
268 parameters Δρmax = 0.27 e Å3
0 restraints Δρmin = −0.31 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C2 0.70626 (17) 0.27403 (17) 1.00932 (16) 0.0333 (3)
C3 0.66409 (19) 0.11255 (18) 1.04089 (17) 0.0389 (3)
C5 0.91077 (18) 0.04305 (16) 0.85230 (16) 0.0343 (3)
C6 0.9468 (2) −0.05252 (19) 0.74145 (19) 0.0432 (4)
C7 1.0802 (2) −0.0350 (2) 0.6255 (2) 0.0488 (4)
C8 1.1788 (2) 0.0798 (2) 0.61835 (19) 0.0470 (4)
C9 1.1492 (2) 0.1717 (2) 0.72885 (19) 0.0418 (4)
C10 1.01455 (17) 0.15430 (16) 0.84775 (16) 0.0332 (3)
C11 0.99809 (17) 0.25083 (15) 0.96767 (16) 0.0319 (3)
C14 0.8259 (2) 0.37447 (19) 1.17444 (18) 0.0391 (3)
C15 0.6494 (2) 0.3646 (2) 1.24567 (19) 0.0493 (4)
C16 0.5879 (2) 0.3677 (2) 1.11921 (19) 0.0448 (4)
C17 0.71935 (17) 0.32632 (16) 0.85722 (16) 0.0335 (3)
C18 0.8016 (2) 0.45256 (19) 0.79868 (18) 0.0405 (4)
C19 0.8104 (2) 0.5045 (2) 0.6632 (2) 0.0519 (4)
C20 0.7365 (3) 0.4332 (2) 0.5842 (2) 0.0571 (5)
C21 0.6523 (3) 0.3101 (2) 0.6421 (2) 0.0562 (5)
C22 0.6436 (2) 0.2556 (2) 0.7781 (2) 0.0439 (4)
Cl 1.33908 (7) 0.10803 (8) 0.46554 (6) 0.0735 (2)
H4 0.745 (2) −0.072 (2) 0.987 (2) 0.052 (6)*
H6 0.874 (2) −0.135 (2) 0.747 (2) 0.047 (5)*
H7 1.101 (3) −0.097 (2) 0.551 (2) 0.062 (6)*
H9 1.219 (2) 0.246 (2) 0.725 (2) 0.049 (5)*
H18 0.851 (2) 0.504 (2) 0.853 (2) 0.048 (5)*
H19 0.864 (3) 0.590 (3) 0.625 (2) 0.065 (7)*
H20 0.745 (3) 0.481 (2) 0.482 (3) 0.064 (6)*
H21 0.599 (3) 0.259 (2) 0.595 (2) 0.058 (6)*
H22 0.584 (2) 0.174 (2) 0.816 (2) 0.051 (6)*
H14A 0.856 (2) 0.473 (2) 1.1500 (19) 0.040 (5)*
H15A 0.608 (3) 0.445 (3) 1.311 (2) 0.065 (6)*
H16A 0.596 (2) 0.467 (2) 1.080 (2) 0.052 (6)*
H14B 0.886 (2) 0.328 (2) 1.233 (2) 0.048 (5)*
H15B 0.623 (2) 0.270 (2) 1.301 (2) 0.054 (6)*
H16B 0.484 (3) 0.331 (2) 1.139 (2) 0.055 (6)*
N1 0.85316 (15) 0.29356 (14) 1.04452 (13) 0.0327 (3)
N4 0.77286 (16) 0.01605 (16) 0.96731 (15) 0.0390 (3)
O12 1.11592 (13) 0.28878 (12) 0.99545 (13) 0.0410 (3)
O13 0.54222 (16) 0.07208 (16) 1.12946 (15) 0.0604 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C2 0.0302 (7) 0.0378 (8) 0.0323 (7) −0.0007 (6) −0.0102 (5) −0.0035 (6)
C3 0.0373 (8) 0.0440 (9) 0.0352 (8) −0.0102 (6) −0.0106 (6) −0.0001 (6)
C5 0.0389 (8) 0.0298 (7) 0.0351 (7) 0.0016 (6) −0.0134 (6) 0.0008 (6)
C6 0.0543 (10) 0.0354 (8) 0.0433 (9) 0.0004 (7) −0.0199 (8) −0.0040 (7)
C7 0.0610 (11) 0.0468 (10) 0.0399 (9) 0.0125 (8) −0.0178 (8) −0.0093 (8)
C8 0.0423 (9) 0.0553 (11) 0.0373 (8) 0.0095 (8) −0.0055 (7) 0.0000 (8)
C9 0.0352 (8) 0.0438 (9) 0.0437 (9) 0.0006 (7) −0.0092 (7) 0.0006 (7)
C10 0.0324 (7) 0.0316 (7) 0.0359 (7) 0.0017 (5) −0.0118 (6) −0.0001 (6)
C11 0.0342 (7) 0.0263 (7) 0.0361 (7) −0.0030 (5) −0.0131 (6) 0.0040 (5)
C14 0.0480 (9) 0.0360 (8) 0.0367 (8) 0.0009 (7) −0.0174 (7) −0.0070 (7)
C15 0.0494 (10) 0.0602 (12) 0.0365 (9) 0.0050 (9) −0.0102 (7) −0.0112 (8)
C16 0.0394 (9) 0.0540 (11) 0.0407 (9) 0.0087 (8) −0.0115 (7) −0.0118 (8)
C17 0.0310 (7) 0.0363 (8) 0.0343 (7) 0.0047 (6) −0.0119 (6) −0.0050 (6)
C18 0.0417 (9) 0.0405 (9) 0.0418 (9) −0.0001 (7) −0.0168 (7) −0.0032 (7)
C19 0.0563 (11) 0.0507 (11) 0.0463 (10) −0.0007 (9) −0.0147 (8) 0.0080 (8)
C20 0.0711 (13) 0.0641 (13) 0.0382 (9) 0.0087 (10) −0.0213 (9) −0.0014 (9)
C21 0.0687 (13) 0.0618 (12) 0.0508 (11) 0.0060 (10) −0.0354 (10) −0.0148 (9)
C22 0.0462 (9) 0.0440 (9) 0.0467 (9) −0.0005 (7) −0.0215 (8) −0.0068 (8)
Cl 0.0554 (3) 0.0986 (5) 0.0498 (3) 0.0051 (3) 0.0065 (2) −0.0053 (3)
N1 0.0349 (6) 0.0337 (6) 0.0318 (6) −0.0002 (5) −0.0134 (5) −0.0037 (5)
N4 0.0418 (7) 0.0314 (7) 0.0417 (7) −0.0078 (5) −0.0106 (6) 0.0026 (6)
O12 0.0371 (6) 0.0362 (6) 0.0532 (7) −0.0047 (4) −0.0189 (5) −0.0019 (5)
O13 0.0519 (8) 0.0631 (9) 0.0522 (8) −0.0217 (7) 0.0050 (6) −0.0049 (6)

Geometric parameters (Å, °)

C2—N1 1.4858 (19) C14—C15 1.517 (3)
C2—C17 1.527 (2) C14—H14A 0.956 (19)
C2—C3 1.538 (2) C14—H14B 0.99 (2)
C2—C16 1.539 (2) C15—C16 1.522 (3)
C3—O13 1.217 (2) C15—H15A 0.99 (2)
C3—N4 1.356 (2) C15—H15B 1.00 (2)
C5—C10 1.395 (2) C16—H16A 0.97 (2)
C5—C6 1.396 (2) C16—H16B 0.96 (2)
C5—N4 1.407 (2) C17—C22 1.387 (2)
C6—C7 1.375 (3) C17—C18 1.393 (2)
C6—H6 1.010 (19) C18—C19 1.380 (3)
C7—C8 1.385 (3) C18—H18 0.95 (2)
C7—H7 0.93 (2) C19—C20 1.378 (3)
C8—C9 1.374 (3) C19—H19 0.94 (2)
C8—Cl 1.7370 (19) C20—C21 1.376 (3)
C9—C10 1.398 (2) C20—H20 1.06 (2)
C9—H9 0.93 (2) C21—C22 1.392 (3)
C10—C11 1.490 (2) C21—H21 0.92 (2)
C11—O12 1.2391 (18) C22—H22 0.92 (2)
C11—N1 1.340 (2) N4—H4 0.85 (2)
C14—N1 1.472 (2)
N1—C2—C17 113.17 (12) C14—C15—C16 102.64 (15)
N1—C2—C3 106.65 (12) C14—C15—H15A 111.5 (13)
C17—C2—C3 113.09 (13) C16—C15—H15A 113.8 (13)
N1—C2—C16 101.84 (12) C14—C15—H15B 110.0 (12)
C17—C2—C16 111.26 (13) C16—C15—H15B 109.7 (12)
C3—C2—C16 110.18 (14) H15A—C15—H15B 109.1 (18)
O13—C3—N4 121.24 (16) C15—C16—C2 104.63 (14)
O13—C3—C2 122.47 (16) C15—C16—H16A 107.3 (12)
N4—C3—C2 116.26 (13) C2—C16—H16A 107.6 (12)
C10—C5—C6 119.46 (15) C15—C16—H16B 115.7 (13)
C10—C5—N4 123.50 (14) C2—C16—H16B 109.7 (13)
C6—C5—N4 116.96 (15) H16A—C16—H16B 111.4 (18)
C7—C6—C5 120.84 (17) C22—C17—C18 118.84 (15)
C7—C6—H6 119.9 (11) C22—C17—C2 121.50 (15)
C5—C6—H6 119.3 (11) C18—C17—C2 119.56 (14)
C6—C7—C8 119.40 (17) C19—C18—C17 120.52 (17)
C6—C7—H7 120.2 (14) C19—C18—H18 119.7 (12)
C8—C7—H7 120.4 (14) C17—C18—H18 119.8 (12)
C9—C8—C7 120.77 (17) C20—C19—C18 120.54 (19)
C9—C8—Cl 120.40 (15) C20—C19—H19 119.1 (14)
C7—C8—Cl 118.82 (15) C18—C19—H19 120.3 (14)
C8—C9—C10 120.23 (17) C21—C20—C19 119.41 (18)
C8—C9—H9 120.2 (12) C21—C20—H20 124.0 (12)
C10—C9—H9 119.6 (12) C19—C20—H20 116.5 (12)
C5—C10—C9 119.18 (15) C20—C21—C22 120.71 (19)
C5—C10—C11 123.97 (14) C20—C21—H21 123.0 (13)
C9—C10—C11 116.69 (14) C22—C21—H21 116.3 (14)
O12—C11—N1 121.43 (14) C17—C22—C21 119.96 (18)
O12—C11—C10 120.38 (14) C17—C22—H22 120.9 (13)
N1—C11—C10 118.18 (13) C21—C22—H22 119.1 (13)
N1—C14—C15 103.15 (14) C11—N1—C14 121.27 (13)
N1—C14—H14A 110.2 (11) C11—N1—C2 126.30 (12)
C15—C14—H14A 110.6 (11) C14—N1—C2 112.36 (12)
N1—C14—H14B 109.6 (11) C3—N4—C5 128.71 (14)
C15—C14—H14B 112.6 (11) C3—N4—H4 113.7 (14)
H14A—C14—H14B 110.4 (15) C5—N4—H4 116.9 (14)
N1—C2—C3—O13 118.43 (17) C3—C2—C17—C22 23.3 (2)
C17—C2—C3—O13 −116.54 (18) C16—C2—C17—C22 −101.29 (18)
C16—C2—C3—O13 8.7 (2) N1—C2—C17—C18 −38.96 (19)
N1—C2—C3—N4 −59.63 (17) C3—C2—C17—C18 −160.38 (14)
C17—C2—C3—N4 65.40 (18) C16—C2—C17—C18 75.00 (18)
C16—C2—C3—N4 −169.39 (14) C22—C17—C18—C19 −1.4 (2)
C10—C5—C6—C7 −2.5 (2) C2—C17—C18—C19 −177.78 (16)
N4—C5—C6—C7 −179.40 (15) C17—C18—C19—C20 0.7 (3)
C5—C6—C7—C8 −0.6 (3) C18—C19—C20—C21 0.6 (3)
C6—C7—C8—C9 3.3 (3) C19—C20—C21—C22 −1.2 (3)
C6—C7—C8—Cl −175.46 (14) C18—C17—C22—C21 0.8 (3)
C7—C8—C9—C10 −2.9 (3) C2—C17—C22—C21 177.10 (16)
Cl—C8—C9—C10 175.88 (13) C20—C21—C22—C17 0.5 (3)
C6—C5—C10—C9 2.9 (2) O12—C11—N1—C14 −6.6 (2)
N4—C5—C10—C9 179.60 (14) C10—C11—N1—C14 172.75 (13)
C6—C5—C10—C11 −172.22 (14) O12—C11—N1—C2 170.27 (13)
N4—C5—C10—C11 4.5 (2) C10—C11—N1—C2 −10.4 (2)
C8—C9—C10—C5 −0.3 (2) C15—C14—N1—C11 −165.56 (14)
C8—C9—C10—C11 175.20 (15) C15—C14—N1—C2 17.18 (18)
C5—C10—C11—O12 141.38 (15) C17—C2—N1—C11 −50.6 (2)
C9—C10—C11—O12 −33.9 (2) C3—C2—N1—C11 74.38 (18)
C5—C10—C11—N1 −38.0 (2) C16—C2—N1—C11 −170.11 (15)
C9—C10—C11—N1 146.80 (14) C17—C2—N1—C14 126.50 (14)
N1—C14—C15—C16 −34.22 (19) C3—C2—N1—C14 −108.52 (14)
C14—C15—C16—C2 39.5 (2) C16—C2—N1—C14 6.98 (17)
N1—C2—C16—C15 −28.50 (18) O13—C3—N4—C5 172.76 (16)
C17—C2—C16—C15 −149.37 (15) C2—C3—N4—C5 −9.1 (2)
C3—C2—C16—C15 84.38 (18) C10—C5—N4—C3 43.9 (2)
N1—C2—C17—C22 144.75 (15) C6—C5—N4—C3 −139.36 (17)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N4—H4···O12i 0.85 (2) 2.35 (2) 2.997 (2) 133 (2)

Symmetry codes: (i) −x+2, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2462).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. De Clercq, E. (1996). Rev. Med. Virol.6, 97–117. [DOI] [PubMed]
  3. Enraf–Nonius (1988). CAD-4 Manual Version 5.0. Enraf–Nonius, Delft, The Netherlands.
  4. Johnson, C. K. (1976). ORTEPII Report ORNL-5138. Oak Ridge National Laboratory, Tennessee, USA.
  5. Karapetyan, H., Tamazyan, R., Martirosyan, A., Hovhannesyan, V. & Gasparyan, S. (2002). Acta Cryst. C58, o399–o401. [DOI] [PubMed]
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (1997). HELENA University of Utrecht, The Netherlands.
  8. Tamazyan, R., Ayvazyan, A., Martirosyan, A., Martirosyan, V. & Schinazi, R. (2007). Acta Cryst. E63, o3967.
  9. Tamazyan, R., Karapetyan, H., Martirosyan, A., Hovhannesyan, V. & Gasparyan, S. (2002). Acta Cryst. C58, o386–o388. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800408X/sj2462sup1.cif

e-64-0o587-sup1.cif (20.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680800408X/sj2462Isup2.hkl

e-64-0o587-Isup2.hkl (221.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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