Abstract
The title compound, C18H15ClN2O2, is a potential human immunodeficiency virus type-1 (HIV-1) non-nucleoside reverse transcriptase inhibitor. The pyrrolidine ring adopts an envelope and the diazepine ring a boat conformation. In the crystal structure, two isomers (R and S) form centrosymmetric dimers via N—H⋯O hydrogen bonds.
Related literature
For details of the pharmacological properties of this family of compounds, see: De Clercq (1996 ▶). For the crystal structures of some analogues of the title compound, see: Karapetyan et al. (2002 ▶); Tamazyan et al. (2002 ▶, 2007 ▶). For reference structural data, see Allen et al. (1987 ▶).
Experimental
Crystal data
C18H15ClN2O2
M r = 326.77
Triclinic,
a = 8.9749 (18) Å
b = 9.2184 (18) Å
c = 9.912 (2) Å
α = 86.90 (3)°
β = 71.35 (3)°
γ = 88.27 (3)°
V = 775.8 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.26 mm−1
T = 293 (2) K
0.35 × 0.32 × 0.28 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: none
7347 measured reflections
4514 independent reflections
3148 reflections with I > 2σ(I)
R int = 0.035
3 standard reflections frequency: 180 min intensity decay: none
Refinement
R[F 2 > 2σ(F 2)] = 0.046
wR(F 2) = 0.121
S = 1.02
4514 reflections
268 parameters
All H-atom parameters refined
Δρmax = 0.27 e Å−3
Δρmin = −0.31 e Å−3
Data collection: DATCOL in CAD-4 (Enraf–Nonius, 1988 ▶); cell refinement: LS in CAD-4; data reduction: HELENA (Spek, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800408X/sj2462sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680800408X/sj2462Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N4—H4⋯O12i | 0.85 (2) | 2.35 (2) | 2.997 (2) | 133 (2) |
Symmetry code: (i)
.
Acknowledgments
This research was carried out under the framework of the Armenian Science and Education Foundation (ANSEF grant No. PS-chemorg-907). The authors express their thanks to ANSEF.
supplementary crystallographic information
Comment
Interest in X-ray structural investigation of title compound, (I), Fig. 1, is stimulated by its potentially HIV-1 RT inhibition properties. These compounds belong to a family of non-nucleoside reverse transcriptase inhibitors (NNRTIs).
All intramolecular interatomic distances in molecule are in good agreement with their mean statistical values (Allen et al., 1987). In the crystal structure dimers are formed by (R and S) optical isomers of molecules of (I) via O12···H4i—N4i and O12i···H4—N4 double hydrogen bonding (Table 1, Fig.2).
Experimental
A solution of 2-phenyl-2-pyrrolidinecarboxylic acid (0.01 mol) and 6-chloro-1,4-dihydro-2H-3,1-benzoxazine-2,4-dione (0.01 mol) in dry DMF (5 ml) was boiled for 4 h. After cooling in an ice bath the title compound formed as a colourless precipitate and was separated by filtration and washed with ethylacetate. The compound as synthesized was a racemic mixture. Crystals were grown from an ethanol solution of the compound.
Refinement
Hydrogen atoms were located in a difference map and refined freely with isotropic thermal parameters.
Figures
Fig. 1.
A view of molecule with the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are omitted for clarity.
Fig. 2.
The formation dimers of molecules via hydrogen bonding. For clarity only those H atoms participating in hydrogen bonding are depicted. Symmetry code: (i) 2 - x, -y, 2 - z
Crystal data
| C18H15ClN2O2 | Z = 2 |
| Mr = 326.77 | F(000) = 340 |
| Triclinic, P1 | Dx = 1.399 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.9749 (18) Å | Cell parameters from 22 reflections |
| b = 9.2184 (18) Å | θ = 12.6–16.6° |
| c = 9.912 (2) Å | µ = 0.26 mm−1 |
| α = 86.90 (3)° | T = 293 K |
| β = 71.35 (3)° | Prism, colourless |
| γ = 88.27 (3)° | 0.35 × 0.32 × 0.28 mm |
| V = 775.8 (3) Å3 |
Data collection
| Enraf–Nonius CAD-4 diffractometer | Rint = 0.035 |
| Radiation source: fine-focus sealed tube | θmax = 30.0°, θmin = 2.2° |
| graphite | h = −12→12 |
| θ/2θ scans | k = −12→12 |
| 7347 measured reflections | l = −13→13 |
| 4514 independent reflections | 3 standard reflections every 180 min |
| 3148 reflections with I > 2σ(I) | intensity decay: none |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: difference Fourier map |
| wR(F2) = 0.121 | All H-atom parameters refined |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0496P)2 + 0.2193P] where P = (Fo2 + 2Fc2)/3 |
| 4514 reflections | (Δ/σ)max < 0.001 |
| 268 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C2 | 0.70626 (17) | 0.27403 (17) | 1.00932 (16) | 0.0333 (3) | |
| C3 | 0.66409 (19) | 0.11255 (18) | 1.04089 (17) | 0.0389 (3) | |
| C5 | 0.91077 (18) | 0.04305 (16) | 0.85230 (16) | 0.0343 (3) | |
| C6 | 0.9468 (2) | −0.05252 (19) | 0.74145 (19) | 0.0432 (4) | |
| C7 | 1.0802 (2) | −0.0350 (2) | 0.6255 (2) | 0.0488 (4) | |
| C8 | 1.1788 (2) | 0.0798 (2) | 0.61835 (19) | 0.0470 (4) | |
| C9 | 1.1492 (2) | 0.1717 (2) | 0.72885 (19) | 0.0418 (4) | |
| C10 | 1.01455 (17) | 0.15430 (16) | 0.84775 (16) | 0.0332 (3) | |
| C11 | 0.99809 (17) | 0.25083 (15) | 0.96767 (16) | 0.0319 (3) | |
| C14 | 0.8259 (2) | 0.37447 (19) | 1.17444 (18) | 0.0391 (3) | |
| C15 | 0.6494 (2) | 0.3646 (2) | 1.24567 (19) | 0.0493 (4) | |
| C16 | 0.5879 (2) | 0.3677 (2) | 1.11921 (19) | 0.0448 (4) | |
| C17 | 0.71935 (17) | 0.32632 (16) | 0.85722 (16) | 0.0335 (3) | |
| C18 | 0.8016 (2) | 0.45256 (19) | 0.79868 (18) | 0.0405 (4) | |
| C19 | 0.8104 (2) | 0.5045 (2) | 0.6632 (2) | 0.0519 (4) | |
| C20 | 0.7365 (3) | 0.4332 (2) | 0.5842 (2) | 0.0571 (5) | |
| C21 | 0.6523 (3) | 0.3101 (2) | 0.6421 (2) | 0.0562 (5) | |
| C22 | 0.6436 (2) | 0.2556 (2) | 0.7781 (2) | 0.0439 (4) | |
| Cl | 1.33908 (7) | 0.10803 (8) | 0.46554 (6) | 0.0735 (2) | |
| H4 | 0.745 (2) | −0.072 (2) | 0.987 (2) | 0.052 (6)* | |
| H6 | 0.874 (2) | −0.135 (2) | 0.747 (2) | 0.047 (5)* | |
| H7 | 1.101 (3) | −0.097 (2) | 0.551 (2) | 0.062 (6)* | |
| H9 | 1.219 (2) | 0.246 (2) | 0.725 (2) | 0.049 (5)* | |
| H18 | 0.851 (2) | 0.504 (2) | 0.853 (2) | 0.048 (5)* | |
| H19 | 0.864 (3) | 0.590 (3) | 0.625 (2) | 0.065 (7)* | |
| H20 | 0.745 (3) | 0.481 (2) | 0.482 (3) | 0.064 (6)* | |
| H21 | 0.599 (3) | 0.259 (2) | 0.595 (2) | 0.058 (6)* | |
| H22 | 0.584 (2) | 0.174 (2) | 0.816 (2) | 0.051 (6)* | |
| H14A | 0.856 (2) | 0.473 (2) | 1.1500 (19) | 0.040 (5)* | |
| H15A | 0.608 (3) | 0.445 (3) | 1.311 (2) | 0.065 (6)* | |
| H16A | 0.596 (2) | 0.467 (2) | 1.080 (2) | 0.052 (6)* | |
| H14B | 0.886 (2) | 0.328 (2) | 1.233 (2) | 0.048 (5)* | |
| H15B | 0.623 (2) | 0.270 (2) | 1.301 (2) | 0.054 (6)* | |
| H16B | 0.484 (3) | 0.331 (2) | 1.139 (2) | 0.055 (6)* | |
| N1 | 0.85316 (15) | 0.29356 (14) | 1.04452 (13) | 0.0327 (3) | |
| N4 | 0.77286 (16) | 0.01605 (16) | 0.96731 (15) | 0.0390 (3) | |
| O12 | 1.11592 (13) | 0.28878 (12) | 0.99545 (13) | 0.0410 (3) | |
| O13 | 0.54222 (16) | 0.07208 (16) | 1.12946 (15) | 0.0604 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C2 | 0.0302 (7) | 0.0378 (8) | 0.0323 (7) | −0.0007 (6) | −0.0102 (5) | −0.0035 (6) |
| C3 | 0.0373 (8) | 0.0440 (9) | 0.0352 (8) | −0.0102 (6) | −0.0106 (6) | −0.0001 (6) |
| C5 | 0.0389 (8) | 0.0298 (7) | 0.0351 (7) | 0.0016 (6) | −0.0134 (6) | 0.0008 (6) |
| C6 | 0.0543 (10) | 0.0354 (8) | 0.0433 (9) | 0.0004 (7) | −0.0199 (8) | −0.0040 (7) |
| C7 | 0.0610 (11) | 0.0468 (10) | 0.0399 (9) | 0.0125 (8) | −0.0178 (8) | −0.0093 (8) |
| C8 | 0.0423 (9) | 0.0553 (11) | 0.0373 (8) | 0.0095 (8) | −0.0055 (7) | 0.0000 (8) |
| C9 | 0.0352 (8) | 0.0438 (9) | 0.0437 (9) | 0.0006 (7) | −0.0092 (7) | 0.0006 (7) |
| C10 | 0.0324 (7) | 0.0316 (7) | 0.0359 (7) | 0.0017 (5) | −0.0118 (6) | −0.0001 (6) |
| C11 | 0.0342 (7) | 0.0263 (7) | 0.0361 (7) | −0.0030 (5) | −0.0131 (6) | 0.0040 (5) |
| C14 | 0.0480 (9) | 0.0360 (8) | 0.0367 (8) | 0.0009 (7) | −0.0174 (7) | −0.0070 (7) |
| C15 | 0.0494 (10) | 0.0602 (12) | 0.0365 (9) | 0.0050 (9) | −0.0102 (7) | −0.0112 (8) |
| C16 | 0.0394 (9) | 0.0540 (11) | 0.0407 (9) | 0.0087 (8) | −0.0115 (7) | −0.0118 (8) |
| C17 | 0.0310 (7) | 0.0363 (8) | 0.0343 (7) | 0.0047 (6) | −0.0119 (6) | −0.0050 (6) |
| C18 | 0.0417 (9) | 0.0405 (9) | 0.0418 (9) | −0.0001 (7) | −0.0168 (7) | −0.0032 (7) |
| C19 | 0.0563 (11) | 0.0507 (11) | 0.0463 (10) | −0.0007 (9) | −0.0147 (8) | 0.0080 (8) |
| C20 | 0.0711 (13) | 0.0641 (13) | 0.0382 (9) | 0.0087 (10) | −0.0213 (9) | −0.0014 (9) |
| C21 | 0.0687 (13) | 0.0618 (12) | 0.0508 (11) | 0.0060 (10) | −0.0354 (10) | −0.0148 (9) |
| C22 | 0.0462 (9) | 0.0440 (9) | 0.0467 (9) | −0.0005 (7) | −0.0215 (8) | −0.0068 (8) |
| Cl | 0.0554 (3) | 0.0986 (5) | 0.0498 (3) | 0.0051 (3) | 0.0065 (2) | −0.0053 (3) |
| N1 | 0.0349 (6) | 0.0337 (6) | 0.0318 (6) | −0.0002 (5) | −0.0134 (5) | −0.0037 (5) |
| N4 | 0.0418 (7) | 0.0314 (7) | 0.0417 (7) | −0.0078 (5) | −0.0106 (6) | 0.0026 (6) |
| O12 | 0.0371 (6) | 0.0362 (6) | 0.0532 (7) | −0.0047 (4) | −0.0189 (5) | −0.0019 (5) |
| O13 | 0.0519 (8) | 0.0631 (9) | 0.0522 (8) | −0.0217 (7) | 0.0050 (6) | −0.0049 (6) |
Geometric parameters (Å, °)
| C2—N1 | 1.4858 (19) | C14—C15 | 1.517 (3) |
| C2—C17 | 1.527 (2) | C14—H14A | 0.956 (19) |
| C2—C3 | 1.538 (2) | C14—H14B | 0.99 (2) |
| C2—C16 | 1.539 (2) | C15—C16 | 1.522 (3) |
| C3—O13 | 1.217 (2) | C15—H15A | 0.99 (2) |
| C3—N4 | 1.356 (2) | C15—H15B | 1.00 (2) |
| C5—C10 | 1.395 (2) | C16—H16A | 0.97 (2) |
| C5—C6 | 1.396 (2) | C16—H16B | 0.96 (2) |
| C5—N4 | 1.407 (2) | C17—C22 | 1.387 (2) |
| C6—C7 | 1.375 (3) | C17—C18 | 1.393 (2) |
| C6—H6 | 1.010 (19) | C18—C19 | 1.380 (3) |
| C7—C8 | 1.385 (3) | C18—H18 | 0.95 (2) |
| C7—H7 | 0.93 (2) | C19—C20 | 1.378 (3) |
| C8—C9 | 1.374 (3) | C19—H19 | 0.94 (2) |
| C8—Cl | 1.7370 (19) | C20—C21 | 1.376 (3) |
| C9—C10 | 1.398 (2) | C20—H20 | 1.06 (2) |
| C9—H9 | 0.93 (2) | C21—C22 | 1.392 (3) |
| C10—C11 | 1.490 (2) | C21—H21 | 0.92 (2) |
| C11—O12 | 1.2391 (18) | C22—H22 | 0.92 (2) |
| C11—N1 | 1.340 (2) | N4—H4 | 0.85 (2) |
| C14—N1 | 1.472 (2) | ||
| N1—C2—C17 | 113.17 (12) | C14—C15—C16 | 102.64 (15) |
| N1—C2—C3 | 106.65 (12) | C14—C15—H15A | 111.5 (13) |
| C17—C2—C3 | 113.09 (13) | C16—C15—H15A | 113.8 (13) |
| N1—C2—C16 | 101.84 (12) | C14—C15—H15B | 110.0 (12) |
| C17—C2—C16 | 111.26 (13) | C16—C15—H15B | 109.7 (12) |
| C3—C2—C16 | 110.18 (14) | H15A—C15—H15B | 109.1 (18) |
| O13—C3—N4 | 121.24 (16) | C15—C16—C2 | 104.63 (14) |
| O13—C3—C2 | 122.47 (16) | C15—C16—H16A | 107.3 (12) |
| N4—C3—C2 | 116.26 (13) | C2—C16—H16A | 107.6 (12) |
| C10—C5—C6 | 119.46 (15) | C15—C16—H16B | 115.7 (13) |
| C10—C5—N4 | 123.50 (14) | C2—C16—H16B | 109.7 (13) |
| C6—C5—N4 | 116.96 (15) | H16A—C16—H16B | 111.4 (18) |
| C7—C6—C5 | 120.84 (17) | C22—C17—C18 | 118.84 (15) |
| C7—C6—H6 | 119.9 (11) | C22—C17—C2 | 121.50 (15) |
| C5—C6—H6 | 119.3 (11) | C18—C17—C2 | 119.56 (14) |
| C6—C7—C8 | 119.40 (17) | C19—C18—C17 | 120.52 (17) |
| C6—C7—H7 | 120.2 (14) | C19—C18—H18 | 119.7 (12) |
| C8—C7—H7 | 120.4 (14) | C17—C18—H18 | 119.8 (12) |
| C9—C8—C7 | 120.77 (17) | C20—C19—C18 | 120.54 (19) |
| C9—C8—Cl | 120.40 (15) | C20—C19—H19 | 119.1 (14) |
| C7—C8—Cl | 118.82 (15) | C18—C19—H19 | 120.3 (14) |
| C8—C9—C10 | 120.23 (17) | C21—C20—C19 | 119.41 (18) |
| C8—C9—H9 | 120.2 (12) | C21—C20—H20 | 124.0 (12) |
| C10—C9—H9 | 119.6 (12) | C19—C20—H20 | 116.5 (12) |
| C5—C10—C9 | 119.18 (15) | C20—C21—C22 | 120.71 (19) |
| C5—C10—C11 | 123.97 (14) | C20—C21—H21 | 123.0 (13) |
| C9—C10—C11 | 116.69 (14) | C22—C21—H21 | 116.3 (14) |
| O12—C11—N1 | 121.43 (14) | C17—C22—C21 | 119.96 (18) |
| O12—C11—C10 | 120.38 (14) | C17—C22—H22 | 120.9 (13) |
| N1—C11—C10 | 118.18 (13) | C21—C22—H22 | 119.1 (13) |
| N1—C14—C15 | 103.15 (14) | C11—N1—C14 | 121.27 (13) |
| N1—C14—H14A | 110.2 (11) | C11—N1—C2 | 126.30 (12) |
| C15—C14—H14A | 110.6 (11) | C14—N1—C2 | 112.36 (12) |
| N1—C14—H14B | 109.6 (11) | C3—N4—C5 | 128.71 (14) |
| C15—C14—H14B | 112.6 (11) | C3—N4—H4 | 113.7 (14) |
| H14A—C14—H14B | 110.4 (15) | C5—N4—H4 | 116.9 (14) |
| N1—C2—C3—O13 | 118.43 (17) | C3—C2—C17—C22 | 23.3 (2) |
| C17—C2—C3—O13 | −116.54 (18) | C16—C2—C17—C22 | −101.29 (18) |
| C16—C2—C3—O13 | 8.7 (2) | N1—C2—C17—C18 | −38.96 (19) |
| N1—C2—C3—N4 | −59.63 (17) | C3—C2—C17—C18 | −160.38 (14) |
| C17—C2—C3—N4 | 65.40 (18) | C16—C2—C17—C18 | 75.00 (18) |
| C16—C2—C3—N4 | −169.39 (14) | C22—C17—C18—C19 | −1.4 (2) |
| C10—C5—C6—C7 | −2.5 (2) | C2—C17—C18—C19 | −177.78 (16) |
| N4—C5—C6—C7 | −179.40 (15) | C17—C18—C19—C20 | 0.7 (3) |
| C5—C6—C7—C8 | −0.6 (3) | C18—C19—C20—C21 | 0.6 (3) |
| C6—C7—C8—C9 | 3.3 (3) | C19—C20—C21—C22 | −1.2 (3) |
| C6—C7—C8—Cl | −175.46 (14) | C18—C17—C22—C21 | 0.8 (3) |
| C7—C8—C9—C10 | −2.9 (3) | C2—C17—C22—C21 | 177.10 (16) |
| Cl—C8—C9—C10 | 175.88 (13) | C20—C21—C22—C17 | 0.5 (3) |
| C6—C5—C10—C9 | 2.9 (2) | O12—C11—N1—C14 | −6.6 (2) |
| N4—C5—C10—C9 | 179.60 (14) | C10—C11—N1—C14 | 172.75 (13) |
| C6—C5—C10—C11 | −172.22 (14) | O12—C11—N1—C2 | 170.27 (13) |
| N4—C5—C10—C11 | 4.5 (2) | C10—C11—N1—C2 | −10.4 (2) |
| C8—C9—C10—C5 | −0.3 (2) | C15—C14—N1—C11 | −165.56 (14) |
| C8—C9—C10—C11 | 175.20 (15) | C15—C14—N1—C2 | 17.18 (18) |
| C5—C10—C11—O12 | 141.38 (15) | C17—C2—N1—C11 | −50.6 (2) |
| C9—C10—C11—O12 | −33.9 (2) | C3—C2—N1—C11 | 74.38 (18) |
| C5—C10—C11—N1 | −38.0 (2) | C16—C2—N1—C11 | −170.11 (15) |
| C9—C10—C11—N1 | 146.80 (14) | C17—C2—N1—C14 | 126.50 (14) |
| N1—C14—C15—C16 | −34.22 (19) | C3—C2—N1—C14 | −108.52 (14) |
| C14—C15—C16—C2 | 39.5 (2) | C16—C2—N1—C14 | 6.98 (17) |
| N1—C2—C16—C15 | −28.50 (18) | O13—C3—N4—C5 | 172.76 (16) |
| C17—C2—C16—C15 | −149.37 (15) | C2—C3—N4—C5 | −9.1 (2) |
| C3—C2—C16—C15 | 84.38 (18) | C10—C5—N4—C3 | 43.9 (2) |
| N1—C2—C17—C22 | 144.75 (15) | C6—C5—N4—C3 | −139.36 (17) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N4—H4···O12i | 0.85 (2) | 2.35 (2) | 2.997 (2) | 133 (2) |
Symmetry codes: (i) −x+2, −y, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2462).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800408X/sj2462sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680800408X/sj2462Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


