Abstract
The title compound, C20H28O2, commonly named Sugiol, is a natural oxygenated diterpene that we have isolated for the first time from a hexane extract of the fruits of Juniperus Oxycedrus L. Its X-ray crystal structure determination confirms an abietane skeleton which was predicted by spectroscopic analysis, mainly by 1H and 13C NMR. The cyclohexane ring adopts a flattened chair conformation, while the cyclohexene ring adopts an envelope conformation. The molecules are linked through O—H⋯O hydrogen bonds to form a zigzag chain extending parallel to the c axis.
Related literature
For related literature, see: Bai-Ping & Isao (1991 ▶); Bouhlal et al. (1988 ▶); Cremer & Pople (1975 ▶); Iwamato et al. (2003 ▶); Politi et al. (2003 ▶); Ulubelen et al. (1997 ▶).
Experimental
Crystal data
C20H28O2
M r = 300.42
Orthorhombic,
a = 9.6060 (4) Å
b = 12.6617 (6) Å
c = 14.0920 (7) Å
V = 1713.99 (14) Å3
Z = 4
Mo Kα radiation
μ = 0.07 mm−1
T = 180 (2) K
0.31 × 0.16 × 0.07 mm
Data collection
Oxford Diffraction Xcalibur diffractometer
Absorption correction: none
13398 measured reflections
2003 independent reflections
1212 reflections with I > 2σ(I)
R int = 0.068
Refinement
R[F 2 > 2σ(F 2)] = 0.046
wR(F 2) = 0.154
S = 1.05
2003 reflections
205 parameters
H-atom parameters constrained
Δρmax = 0.36 e Å−3
Δρmin = −0.38 e Å−3
Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007769/pk2088sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007769/pk2088Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O6—H6⋯O9i | 0.82 | 1.84 | 2.642 (4) | 165 |
Symmetry code: (i)
.
supplementary crystallographic information
Comment
Juniperus oxycedrus L. has been used in traditional folk medicine for the treatment of chronic eczema and other several skin diseases (Bouhlal et al., 1988). Diterpenes are among the identified chemical constituents of this plant. They are of great interest with respect to their biological activity including antitumor, antituberculous and antimalarial effects (Iwamato et al., 2003; Politi et al., 2003; Ulubelen et al., 1997).
The structure of the title compound is built up by three fused six-membered rings A, B and C (Fig. 1). B displays an envelope conformation with puckering parameters, Q=0.510 (4) Å, θ= 124.6 (4)° and φ= 227.1 (6)° (Cremer & Pople, 1975) whereas C has a flattened chair conformation with Q= 0.546 (4) Å, θ = 5.0 (4) and φ = 234 (5)°. A is an aromatic ring and it is perfectly planar. The molecules are linked through O—H···O hydrogen bonds involving the hydroxyl group as a donor and the ketone oxygen as an acceptor yielding a zig zag chain developing parallel to the c axis (Fig. 2, Table 1).
Experimental
In order to isolate similar compounds, we have studied the chemical composition of the fruits of Juniperus oxycedrus L. Thus, 203 g of pulverized cones was extracted with hexane. The solvent was evaporated under reduced pressure to give 14.3 g of the crude hexanic extract which was purified on silica gel column chromatography using hexane–AcOEt (97:3) as eluent, to give crystals of Sugiol (I). All 1H and 13C NMR spectroscopic data of the isolated product were in full accord with the litterature (Bai-Ping & Isao, 1991).
Refinement
All H atoms attached to C and O atoms were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic), 0.98 Å (methine), 0.97 Å (methylene), 0.96 Å (methyl) and O—H = 0.82 Å with Uiso(H) = 1.2Ueq or Uiso(H) = 1.5Ueq(methyl, OH).
In the absence of significant anomalous scattering, the absolute configuration could not be reliably determined and then the Friedel pairs were merged and any references to the Flack parameter were removed.
Figures
Fig. 1.
Molecular view of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.
Fig. 2.
Partial packing view of the compound, showing the formation of the zig zag chain parallel to the c axis and built from O—H···O hydrogen bonds. H atoms not involved in hydrogen bonding have been omitted for clarity. [symmetry codes: (i) -x + 1/2,-y + 1, z + 1/2].
Crystal data
| C20H28O2 | F000 = 656 |
| Mr = 300.42 | Dx = 1.164 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 3571 reflections |
| a = 9.6060 (4) Å | θ = 2.7–32.1º |
| b = 12.6617 (6) Å | µ = 0.07 mm−1 |
| c = 14.0920 (7) Å | T = 180 (2) K |
| V = 1713.99 (14) Å3 | Flattened box, colorless |
| Z = 4 | 0.31 × 0.16 × 0.07 mm |
Data collection
| Oxford Diffraction Xcalibur diffractometer | 2003 independent reflections |
| Radiation source: fine-focus sealed tube | 1212 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.068 |
| Detector resolution: 8.2632 pixels mm-1 | θmax = 26.4º |
| T = 180(2) K | θmin = 2.7º |
| ω and φ scans | h = −12→12 |
| Absorption correction: none | k = −15→15 |
| 13398 measured reflections | l = −14→17 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
| wR(F2) = 0.154 | w = 1/[σ2(Fo2) + (0.0842P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 2003 reflections | Δρmax = 0.36 e Å−3 |
| 205 parameters | Δρmin = −0.38 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.0789 (4) | 0.8588 (3) | 0.0839 (3) | 0.0291 (10) | |
| C2 | 0.1754 (4) | 0.9176 (3) | 0.1515 (3) | 0.0339 (11) | |
| H2A | 0.2674 | 0.9211 | 0.1234 | 0.041* | |
| H2B | 0.1418 | 0.9894 | 0.1588 | 0.041* | |
| C3 | 0.1869 (5) | 0.8673 (3) | 0.2486 (3) | 0.0366 (11) | |
| H3A | 0.0966 | 0.8681 | 0.2794 | 0.044* | |
| H3B | 0.2511 | 0.9077 | 0.2874 | 0.044* | |
| C4 | 0.2389 (4) | 0.7525 (3) | 0.2400 (3) | 0.0296 (10) | |
| H4A | 0.2430 | 0.7215 | 0.3029 | 0.036* | |
| H4B | 0.3327 | 0.7531 | 0.2145 | 0.036* | |
| C4A | 0.1464 (4) | 0.6828 (3) | 0.1762 (3) | 0.0217 (9) | |
| C4B | 0.2182 (4) | 0.5776 (3) | 0.1555 (3) | 0.0202 (9) | |
| C5 | 0.3090 (4) | 0.5314 (3) | 0.2203 (3) | 0.0252 (9) | |
| H5 | 0.3286 | 0.5661 | 0.2768 | 0.030* | |
| C6 | 0.3699 (4) | 0.4356 (3) | 0.2023 (3) | 0.0255 (9) | |
| C7 | 0.3444 (4) | 0.3792 (3) | 0.1186 (3) | 0.0296 (10) | |
| C8 | 0.2533 (4) | 0.4252 (3) | 0.0564 (3) | 0.0244 (10) | |
| H8 | 0.2335 | 0.3898 | 0.0002 | 0.029* | |
| C8A | 0.1892 (4) | 0.5211 (3) | 0.0724 (3) | 0.0219 (9) | |
| C9 | 0.0961 (4) | 0.5626 (3) | 0.0010 (3) | 0.0220 (9) | |
| C10 | 0.0395 (4) | 0.6713 (3) | 0.0137 (3) | 0.0307 (10) | |
| H10A | −0.0545 | 0.6663 | 0.0384 | 0.037* | |
| H10B | 0.0344 | 0.7054 | −0.0479 | 0.037* | |
| C10A | 0.1257 (4) | 0.7408 (3) | 0.0804 (3) | 0.0227 (9) | |
| H10C | 0.2186 | 0.7426 | 0.0518 | 0.027* | |
| C11 | 0.0945 (5) | 0.9073 (3) | −0.0143 (3) | 0.0455 (13) | |
| H11A | 0.0847 | 0.9826 | −0.0099 | 0.068* | |
| H11B | 0.0239 | 0.8795 | −0.0556 | 0.068* | |
| H11C | 0.1847 | 0.8905 | −0.0393 | 0.068* | |
| C12 | −0.0741 (4) | 0.8754 (3) | 0.1138 (3) | 0.0397 (12) | |
| H12A | −0.1013 | 0.9468 | 0.1006 | 0.060* | |
| H12B | −0.0836 | 0.8618 | 0.1805 | 0.060* | |
| H12C | −0.1328 | 0.8278 | 0.0790 | 0.060* | |
| C13 | 0.0112 (4) | 0.6551 (3) | 0.2292 (3) | 0.0333 (11) | |
| H13A | −0.0494 | 0.6162 | 0.1879 | 0.050* | |
| H13B | −0.0343 | 0.7190 | 0.2490 | 0.050* | |
| H13C | 0.0328 | 0.6130 | 0.2839 | 0.050* | |
| C14 | 0.4133 (5) | 0.2730 (3) | 0.1025 (3) | 0.0322 (11) | |
| H14 | 0.5100 | 0.2792 | 0.1240 | 0.039* | |
| C15 | 0.4171 (6) | 0.2384 (4) | 0.0019 (4) | 0.0672 (18) | |
| H15A | 0.3239 | 0.2261 | −0.0201 | 0.101* | |
| H15B | 0.4701 | 0.1743 | −0.0032 | 0.101* | |
| H15C | 0.4598 | 0.2923 | −0.0362 | 0.101* | |
| C16 | 0.3443 (6) | 0.1868 (4) | 0.1627 (4) | 0.0614 (16) | |
| H16A | 0.2516 | 0.1744 | 0.1399 | 0.092* | |
| H16B | 0.3406 | 0.2093 | 0.2277 | 0.092* | |
| H16C | 0.3976 | 0.1229 | 0.1582 | 0.092* | |
| O6 | 0.4598 (3) | 0.3917 (2) | 0.2654 (2) | 0.0353 (8) | |
| H6 | 0.4641 | 0.4287 | 0.3131 | 0.053* | |
| O9 | 0.0639 (3) | 0.5113 (2) | −0.06942 (18) | 0.0304 (7) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.033 (2) | 0.018 (2) | 0.036 (2) | 0.0086 (18) | −0.001 (2) | 0.0033 (19) |
| C2 | 0.033 (2) | 0.021 (2) | 0.048 (3) | 0.0042 (19) | 0.000 (2) | −0.002 (2) |
| C3 | 0.032 (2) | 0.029 (2) | 0.048 (3) | 0.001 (2) | −0.008 (2) | −0.014 (2) |
| C4 | 0.032 (2) | 0.027 (2) | 0.029 (2) | 0.0046 (19) | −0.0046 (19) | −0.0085 (19) |
| C4A | 0.022 (2) | 0.021 (2) | 0.022 (2) | −0.0028 (16) | −0.0010 (18) | 0.0000 (17) |
| C4B | 0.0183 (18) | 0.0196 (19) | 0.023 (2) | −0.0009 (16) | 0.0041 (18) | 0.0026 (17) |
| C5 | 0.028 (2) | 0.025 (2) | 0.023 (2) | −0.0008 (18) | 0.000 (2) | −0.0038 (18) |
| C6 | 0.029 (2) | 0.028 (2) | 0.019 (2) | 0.0069 (19) | 0.0023 (18) | 0.0033 (19) |
| C7 | 0.032 (3) | 0.025 (2) | 0.032 (2) | 0.0043 (19) | 0.007 (2) | 0.002 (2) |
| C8 | 0.028 (2) | 0.023 (2) | 0.022 (2) | 0.0025 (19) | −0.0002 (18) | 0.0010 (18) |
| C8A | 0.026 (2) | 0.0196 (19) | 0.020 (2) | −0.0039 (17) | −0.0026 (19) | 0.0021 (18) |
| C9 | 0.024 (2) | 0.021 (2) | 0.020 (2) | −0.0005 (17) | 0.0018 (18) | 0.0018 (18) |
| C10 | 0.033 (2) | 0.032 (2) | 0.027 (2) | 0.0024 (19) | −0.006 (2) | −0.0011 (19) |
| C10A | 0.021 (2) | 0.024 (2) | 0.023 (2) | 0.0048 (16) | −0.0008 (18) | −0.0035 (18) |
| C11 | 0.059 (3) | 0.029 (3) | 0.049 (3) | 0.008 (2) | 0.001 (3) | 0.011 (2) |
| C12 | 0.035 (3) | 0.035 (3) | 0.048 (3) | 0.013 (2) | −0.009 (2) | −0.010 (2) |
| C13 | 0.030 (2) | 0.033 (2) | 0.037 (3) | 0.0033 (19) | 0.003 (2) | 0.003 (2) |
| C14 | 0.036 (3) | 0.025 (2) | 0.035 (2) | 0.010 (2) | −0.002 (2) | 0.0025 (18) |
| C15 | 0.093 (5) | 0.065 (4) | 0.044 (3) | 0.045 (4) | 0.001 (3) | −0.011 (3) |
| C16 | 0.067 (4) | 0.036 (3) | 0.080 (4) | 0.006 (3) | 0.017 (3) | 0.006 (3) |
| O6 | 0.0436 (18) | 0.0353 (17) | 0.0271 (17) | 0.0196 (15) | −0.0073 (15) | −0.0031 (14) |
| O9 | 0.0393 (17) | 0.0288 (15) | 0.0231 (15) | 0.0002 (14) | −0.0061 (14) | −0.0076 (13) |
Geometric parameters (Å, °)
| C1—C11 | 1.521 (6) | C8A—C9 | 1.445 (5) |
| C1—C2 | 1.524 (6) | C9—O9 | 1.226 (4) |
| C1—C12 | 1.543 (6) | C9—C10 | 1.491 (5) |
| C1—C10A | 1.561 (5) | C10—C10A | 1.530 (5) |
| C2—C3 | 1.514 (6) | C10—H10A | 0.9700 |
| C2—H2A | 0.9700 | C10—H10B | 0.9700 |
| C2—H2B | 0.9700 | C10A—H10C | 0.9800 |
| C3—C4 | 1.542 (5) | C11—H11A | 0.9600 |
| C3—H3A | 0.9700 | C11—H11B | 0.9600 |
| C3—H3B | 0.9700 | C11—H11C | 0.9600 |
| C4—C4A | 1.542 (5) | C12—H12A | 0.9600 |
| C4—H4A | 0.9700 | C12—H12B | 0.9600 |
| C4—H4B | 0.9700 | C12—H12C | 0.9600 |
| C4A—C4B | 1.528 (5) | C13—H13A | 0.9600 |
| C4A—C13 | 1.539 (5) | C13—H13B | 0.9600 |
| C4A—C10A | 1.550 (5) | C13—H13C | 0.9600 |
| C4B—C5 | 1.391 (5) | C14—C15 | 1.485 (6) |
| C4B—C8A | 1.401 (5) | C14—C16 | 1.532 (6) |
| C5—C6 | 1.370 (5) | C14—H14 | 0.9800 |
| C5—H5 | 0.9300 | C15—H15A | 0.9600 |
| C6—O6 | 1.359 (4) | C15—H15B | 0.9600 |
| C6—C7 | 1.401 (5) | C15—H15C | 0.9600 |
| C7—C8 | 1.369 (5) | C16—H16A | 0.9600 |
| C7—C14 | 1.517 (5) | C16—H16B | 0.9600 |
| C8—C8A | 1.380 (5) | C16—H16C | 0.9600 |
| C8—H8 | 0.9300 | O6—H6 | 0.8200 |
| C11—C1—C2 | 108.1 (4) | C8A—C9—C10 | 118.6 (3) |
| C11—C1—C12 | 106.7 (4) | C9—C10—C10A | 114.0 (3) |
| C2—C1—C12 | 110.0 (3) | C9—C10—H10A | 108.7 |
| C11—C1—C10A | 109.3 (3) | C10A—C10—H10A | 108.7 |
| C2—C1—C10A | 108.2 (3) | C9—C10—H10B | 108.7 |
| C12—C1—C10A | 114.4 (3) | C10A—C10—H10B | 108.7 |
| C3—C2—C1 | 113.9 (3) | H10A—C10—H10B | 107.6 |
| C3—C2—H2A | 108.8 | C10—C10A—C4A | 109.4 (3) |
| C1—C2—H2A | 108.8 | C10—C10A—C1 | 114.4 (3) |
| C3—C2—H2B | 108.8 | C4A—C10A—C1 | 117.6 (3) |
| C1—C2—H2B | 108.8 | C10—C10A—H10C | 104.6 |
| H2A—C2—H2B | 107.7 | C4A—C10A—H10C | 104.6 |
| C2—C3—C4 | 110.4 (3) | C1—C10A—H10C | 104.6 |
| C2—C3—H3A | 109.6 | C1—C11—H11A | 109.5 |
| C4—C3—H3A | 109.6 | C1—C11—H11B | 109.5 |
| C2—C3—H3B | 109.6 | H11A—C11—H11B | 109.5 |
| C4—C3—H3B | 109.6 | C1—C11—H11C | 109.5 |
| H3A—C3—H3B | 108.1 | H11A—C11—H11C | 109.5 |
| C3—C4—C4A | 113.5 (3) | H11B—C11—H11C | 109.5 |
| C3—C4—H4A | 108.9 | C1—C12—H12A | 109.5 |
| C4A—C4—H4A | 108.9 | C1—C12—H12B | 109.5 |
| C3—C4—H4B | 108.9 | H12A—C12—H12B | 109.5 |
| C4A—C4—H4B | 108.9 | C1—C12—H12C | 109.5 |
| H4A—C4—H4B | 107.7 | H12A—C12—H12C | 109.5 |
| C4B—C4A—C13 | 106.0 (3) | H12B—C12—H12C | 109.5 |
| C4B—C4A—C4 | 110.5 (3) | C4A—C13—H13A | 109.5 |
| C13—C4A—C4 | 109.5 (3) | C4A—C13—H13B | 109.5 |
| C4B—C4A—C10A | 107.8 (3) | H13A—C13—H13B | 109.5 |
| C13—C4A—C10A | 115.0 (3) | C4A—C13—H13C | 109.5 |
| C4—C4A—C10A | 108.1 (3) | H13A—C13—H13C | 109.5 |
| C5—C4B—C8A | 117.3 (3) | H13B—C13—H13C | 109.5 |
| C5—C4B—C4A | 121.6 (3) | C15—C14—C7 | 114.6 (4) |
| C8A—C4B—C4A | 121.0 (3) | C15—C14—C16 | 109.2 (4) |
| C6—C5—C4B | 121.3 (4) | C7—C14—C16 | 111.0 (4) |
| C6—C5—H5 | 119.4 | C15—C14—H14 | 107.2 |
| C4B—C5—H5 | 119.4 | C7—C14—H14 | 107.2 |
| O6—C6—C5 | 120.9 (4) | C16—C14—H14 | 107.2 |
| O6—C6—C7 | 117.0 (3) | C14—C15—H15A | 109.5 |
| C5—C6—C7 | 122.2 (4) | C14—C15—H15B | 109.5 |
| C8—C7—C6 | 115.8 (3) | H15A—C15—H15B | 109.5 |
| C8—C7—C14 | 124.1 (4) | C14—C15—H15C | 109.5 |
| C6—C7—C14 | 120.1 (4) | H15A—C15—H15C | 109.5 |
| C7—C8—C8A | 123.7 (4) | H15B—C15—H15C | 109.5 |
| C7—C8—H8 | 118.2 | C14—C16—H16A | 109.5 |
| C8A—C8—H8 | 118.2 | C14—C16—H16B | 109.5 |
| C8—C8A—C4B | 119.8 (4) | H16A—C16—H16B | 109.5 |
| C8—C8A—C9 | 118.9 (3) | C14—C16—H16C | 109.5 |
| C4B—C8A—C9 | 121.3 (3) | H16A—C16—H16C | 109.5 |
| O9—C9—C8A | 121.7 (3) | H16B—C16—H16C | 109.5 |
| O9—C9—C10 | 119.6 (4) | C6—O6—H6 | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O6—H6···O9i | 0.82 | 1.84 | 2.642 (4) | 165 |
Symmetry codes: (i) −x+1/2, −y+1, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2088).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007769/pk2088sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007769/pk2088Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


