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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Mar 12;64(Pt 4):o685. doi: 10.1107/S1600536808004455

(4S)-Benzyl 4-isopropyl-5-oxo-1,3-oxazolidine-3-carboxyl­ate

Jian-Bin Wu a, Kan Lin a, Jian-Nan Guo a,*, Guo Tang a, Yu-Fen Zhao a
PMCID: PMC2961013  PMID: 21202077

Abstract

In the crystal structure of the title compound, C14H17NO4, obtained by the reaction of N-benzoxycarbonyl-l-valine, paraformaldehyde and 4-methyl­benzene­sulfonic acid, mol­ecules are linked by C—H⋯O hydrogen bonds, generating linear chains parallel to the a axis. C—H⋯π inter­actions of stacked benzene rings also provide stability for the crystal structure.

Related literature

For related literature, see: Dorow & Gingrich (1999); Allen et al. (1987); Pavel et al. (1993); Reddy et al. (2000).graphic file with name e-64-0o685-scheme1.jpg

Experimental

Crystal data

  • C14H17NO4

  • M r = 263.29

  • Orthorhombic, Inline graphic

  • a = 6.0528 (2) Å

  • b = 13.1581 (5) Å

  • c = 16.6778 (6) Å

  • V = 1328.28 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 153 (2) K

  • 0.50 × 0.17 × 0.09 mm

Data collection

  • Bruker APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.953, T max = 0.991

  • 5718 measured reflections

  • 1368 independent reflections

  • 1100 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.028

  • wR(F 2) = 0.062

  • S = 0.99

  • 1368 reflections

  • 172 parameters

  • H-atom parameters constrained

  • Δρmax = 0.12 e Å−3

  • Δρmin = −0.13 e Å−3

Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808004455/cf2183sup1.cif

e-64-0o685-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004455/cf2183Isup2.hkl

e-64-0o685-Isup2.hkl (67.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the C9–C14 benzene ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2A⋯O5i 0.97 2.32 3.258 (2) 163
C12—H12ACgii 0.93 3.37 3.963 (3) 124

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the Key Foundation of Science and Technology Project of Fujian Province, China (Key grant No. 2002H011).

supplementary crystallographic information

Comment

The title compound (I) belongs to a class of 5-oxazolidinone and has been used to synthesize dipeptides and a series of biologically active molecules (Dorow & Gingrich, 1999).

In the compound, the oxazolidine ring is formed by the reaction of N-benzoxycarbonyl-L-valine, paraformaldehyde, and 4-methylbenzenesulfonic acid. The phenyl and the oxazolidine rings make a dihedral angle of 49.7 (1) (Fig. 1). The absolute configuration (S) of the stereocentre C4 remains unchanged during the synthetic procedure. An X-ray crystal structure determination of the molecular structure of compound (I) was carried out to determine its conformation. The bond lengths are within normal ranges (Allen et al., 1987).

The packing is shown in Fig. 2. The occurrence of C—H···O hydrogen bond interactions lead to the formation of linear chains parallel to the a axis. The packing is further stabilized by C—H···π interactions of stacked benzene rings in the chains (Fig. 3), with typical geometry (Pavel et al., 1993).

Experimental

The title compound was prepared by a method based on one described by Reddy et al. (2000). A mixture of N-benzoxycarbonyl-L-valine (7.53 g, 3 mmol), paraformaldehyde (1.8 g, 6 mmol) and 4-methylbenzenesulfonic acid (PTSA, 0.31 g, 1.8 mmol) in benzene (25 ml) was refluxed, using a Dean–Stark apparatus, for about 1 h. After cooling, the resulting mixture was washed with 0.3 M aqueous K2CO3 solution (30 ml) followed by saturated aqueous NaCl solution (30 ml). The organic layer was separated and dried with Mg2SO4, filtered and concentrated in vacuo to give the crude product as a white solid (5.12 g, 65%). Crystals suitable for X-ray diffraction were obtained from an ethanol solution.

Refinement

The hydrogen atoms were positioned geometrically (C—H = 0.93, 0.98, 0.97 or 0.96 Å for phenyl, tertiary, methylene or methyl H atoms respectively) and were included in the refinement in the riding model approximation. The displacement parameters of methyl H atoms were set to 1.5Ueq(C), while those of other H atoms were set to 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) with the atom-labeling scheme, showing 50% probability displacement ellipsoids. H atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

The packing of the molecules, viewed down the a axis.

Fig. 3.

Fig. 3.

C—H···π interactions of (I). These and hydrogen bonds are shown as dashed lines. [Symmetry codes: (i) x - 1/2, -y + 1/2, -z; (ii) x + 1/2, -y + 1/2, -z.]

Crystal data

C14H17NO4 F000 = 560
Mr = 263.29 Dx = 1.317 Mg m3
Orthorhombic, P212121 Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 2839 reflections
a = 6.0528 (2) Å θ = 2.9–32.6º
b = 13.1581 (5) Å µ = 0.10 mm1
c = 16.6778 (6) Å T = 153 (2) K
V = 1328.28 (8) Å3 Needle, colourless
Z = 4 0.50 × 0.17 × 0.09 mm

Data collection

Bruker APEX CCD diffractometer 1368 independent reflections
Radiation source: sealed tube 1100 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.028
Detector resolution: 16.1903 pixels mm-1 θmax = 25.0º
T = 153(2) K θmin = 2.9º
φ and ω scans h = −7→7
Absorption correction: multi-scan(SADABS; Bruker, 2001) k = −14→15
Tmin = 0.953, Tmax = 0.991 l = −19→19
5718 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028 H-atom parameters constrained
wR(F2) = 0.062   w = 1/[σ2(Fo2) + (0.0398P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99 (Δ/σ)max < 0.001
1368 reflections Δρmax = 0.12 e Å3
172 parameters Δρmin = −0.13 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 −0.4445 (2) −0.27913 (11) 0.18553 (8) 0.0312 (3)
C2 −0.6151 (3) −0.24832 (15) 0.13165 (12) 0.0315 (5)
H2A −0.7493 −0.2318 0.1607 0.038*
H2B −0.6473 −0.3017 0.0932 0.038*
N3 −0.5269 (3) −0.15900 (11) 0.09160 (9) 0.0250 (4)
C4 −0.3046 (3) −0.13532 (13) 0.11905 (11) 0.0242 (4)
H4A −0.2008 −0.1412 0.0742 0.029*
O5 −0.1002 (2) −0.23774 (11) 0.21593 (8) 0.0361 (4)
C5 −0.2637 (3) −0.22044 (15) 0.17824 (11) 0.0261 (4)
O6 −0.7800 (2) −0.17466 (10) −0.00699 (9) 0.0348 (4)
C6 −0.6135 (3) −0.13483 (15) 0.01957 (12) 0.0268 (5)
O7 −0.4976 (2) −0.06146 (10) −0.01706 (7) 0.0308 (3)
C8 −0.5807 (4) −0.02766 (16) −0.09484 (11) 0.0325 (5)
H8A −0.6570 −0.0837 −0.1206 0.039*
H8B −0.4566 −0.0089 −0.1286 0.039*
C9 −0.7346 (4) 0.06079 (15) −0.08858 (11) 0.0287 (5)
C10 −0.9408 (4) 0.05173 (17) −0.05121 (12) 0.0361 (5)
H10A −0.9819 −0.0099 −0.0283 0.043*
C11 −1.0833 (4) 0.13326 (18) −0.04812 (13) 0.0435 (6)
H11A −1.2181 0.1269 −0.0218 0.052*
C12 −1.0276 (4) 0.22421 (19) −0.08374 (14) 0.0482 (6)
H12A −1.1247 0.2790 −0.0821 0.058*
C13 −0.8260 (4) 0.23316 (17) −0.12188 (15) 0.0467 (6)
H13A −0.7882 0.2941 −0.1466 0.056*
C14 −0.6801 (4) 0.15252 (15) −0.12363 (12) 0.0365 (5)
H14A −0.5438 0.1600 −0.1487 0.044*
C15 −0.2829 (3) −0.02961 (14) 0.15749 (11) 0.0266 (5)
H15A −0.3376 0.0202 0.1186 0.032*
C16 −0.4247 (4) −0.02032 (17) 0.23247 (13) 0.0378 (5)
H16A −0.4075 0.0464 0.2550 0.057*
H16B −0.3791 −0.0703 0.2710 0.057*
H16C −0.5769 −0.0312 0.2187 0.057*
C17 −0.0424 (3) −0.00377 (16) 0.17484 (13) 0.0375 (5)
H17A −0.0338 0.0625 0.1988 0.056*
H17B 0.0401 −0.0043 0.1257 0.056*
H17C 0.0182 −0.0532 0.2110 0.056*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0307 (8) 0.0288 (7) 0.0341 (7) −0.0021 (7) 0.0004 (6) 0.0064 (6)
C2 0.0256 (11) 0.0325 (12) 0.0363 (11) −0.0034 (10) 0.0005 (9) 0.0050 (10)
N3 0.0244 (9) 0.0243 (8) 0.0261 (9) −0.0028 (7) −0.0006 (7) 0.0013 (7)
C4 0.0224 (10) 0.0257 (10) 0.0244 (10) −0.0005 (9) 0.0020 (8) 0.0008 (9)
O5 0.0331 (8) 0.0374 (8) 0.0378 (8) 0.0059 (7) −0.0048 (7) 0.0036 (7)
C5 0.0274 (11) 0.0248 (10) 0.0261 (10) 0.0032 (9) 0.0033 (10) −0.0028 (9)
O6 0.0328 (8) 0.0344 (8) 0.0372 (8) −0.0060 (7) −0.0088 (7) −0.0012 (7)
C6 0.0267 (11) 0.0232 (11) 0.0304 (11) 0.0002 (10) 0.0014 (9) −0.0039 (9)
O7 0.0325 (8) 0.0313 (7) 0.0286 (7) −0.0057 (7) −0.0029 (6) 0.0055 (6)
C8 0.0396 (12) 0.0346 (11) 0.0232 (10) −0.0033 (10) −0.0023 (9) 0.0027 (9)
C9 0.0375 (12) 0.0298 (11) 0.0187 (9) −0.0039 (10) −0.0045 (9) 0.0003 (9)
C10 0.0414 (13) 0.0358 (12) 0.0310 (11) −0.0023 (11) 0.0010 (10) 0.0037 (10)
C11 0.0388 (13) 0.0509 (15) 0.0408 (13) 0.0027 (13) −0.0022 (11) −0.0038 (12)
C12 0.0554 (17) 0.0377 (14) 0.0514 (14) 0.0107 (13) −0.0094 (13) −0.0075 (12)
C13 0.0624 (16) 0.0283 (12) 0.0493 (13) −0.0039 (12) −0.0102 (13) 0.0045 (12)
C14 0.0430 (13) 0.0360 (12) 0.0305 (11) −0.0070 (11) −0.0022 (10) 0.0017 (11)
C15 0.0299 (11) 0.0212 (10) 0.0288 (10) 0.0002 (9) −0.0049 (9) 0.0012 (8)
C16 0.0353 (12) 0.0364 (12) 0.0419 (12) 0.0045 (10) 0.0002 (10) −0.0116 (10)
C17 0.0365 (13) 0.0365 (13) 0.0395 (12) −0.0090 (11) −0.0019 (10) −0.0004 (10)

Geometric parameters (Å, °)

O1—C5 1.345 (2) C10—C11 1.378 (3)
O1—C2 1.428 (2) C10—H10A 0.930
C2—N3 1.454 (2) C11—C12 1.378 (4)
C2—H2A 0.970 C11—H11A 0.930
C2—H2B 0.970 C12—C13 1.381 (4)
N3—C6 1.349 (2) C12—H12A 0.930
N3—C4 1.455 (2) C13—C14 1.381 (3)
C4—C5 1.513 (3) C13—H13A 0.930
C4—C15 1.537 (2) C14—H14A 0.930
C4—H4A 0.980 C15—C16 1.522 (3)
O5—C5 1.194 (2) C15—C17 1.523 (3)
O6—C6 1.219 (2) C15—H15A 0.980
C6—O7 1.340 (2) C16—H16A 0.960
O7—C8 1.461 (2) C16—H16B 0.960
C8—C9 1.495 (3) C16—H16C 0.960
C8—H8A 0.970 C17—H17A 0.960
C8—H8B 0.970 C17—H17B 0.960
C9—C14 1.381 (3) C17—H17C 0.960
C9—C10 1.400 (3)
C5—O1—C2 111.63 (15) C11—C10—H10A 119.7
O1—C2—N3 104.66 (15) C9—C10—H10A 119.7
O1—C2—H2A 110.8 C10—C11—C12 120.5 (2)
N3—C2—H2A 110.8 C10—C11—H11A 119.8
O1—C2—H2B 110.8 C12—C11—H11A 119.8
N3—C2—H2B 110.8 C11—C12—C13 119.3 (2)
H2A—C2—H2B 108.9 C11—C12—H12A 120.4
C6—N3—C2 117.21 (16) C13—C12—H12A 120.4
C6—N3—C4 126.09 (16) C14—C13—C12 120.6 (2)
C2—N3—C4 111.61 (15) C14—C13—H13A 119.7
N3—C4—C5 101.42 (15) C12—C13—H13A 119.7
N3—C4—C15 113.81 (15) C13—C14—C9 120.7 (2)
C5—C4—C15 112.56 (15) C13—C14—H14A 119.7
N3—C4—H4A 109.6 C9—C14—H14A 119.7
C5—C4—H4A 109.6 C16—C15—C17 111.42 (17)
C15—C4—H4A 109.6 C16—C15—C4 111.55 (16)
O5—C5—O1 121.14 (18) C17—C15—C4 111.28 (16)
O5—C5—C4 128.30 (19) C16—C15—H15A 107.4
O1—C5—C4 110.55 (16) C17—C15—H15A 107.4
O6—C6—O7 125.19 (18) C4—C15—H15A 107.4
O6—C6—N3 122.92 (18) C15—C16—H16A 109.5
O7—C6—N3 111.88 (17) C15—C16—H16B 109.5
C6—O7—C8 116.37 (15) H16A—C16—H16B 109.5
O7—C8—C9 112.93 (16) C15—C16—H16C 109.5
O7—C8—H8A 109.0 H16A—C16—H16C 109.5
C9—C8—H8A 109.0 H16B—C16—H16C 109.5
O7—C8—H8B 109.0 C15—C17—H17A 109.5
C9—C8—H8B 109.0 C15—C17—H17B 109.5
H8A—C8—H8B 107.8 H17A—C17—H17B 109.5
C14—C9—C10 118.4 (2) C15—C17—H17C 109.5
C14—C9—C8 120.14 (19) H17A—C17—H17C 109.5
C10—C9—C8 121.37 (18) H17B—C17—H17C 109.5
C11—C10—C9 120.6 (2)
C5—O1—C2—N3 −3.0 (2) O6—C6—O7—C8 0.1 (3)
O1—C2—N3—C6 157.15 (15) N3—C6—O7—C8 −178.52 (15)
O1—C2—N3—C4 0.8 (2) C6—O7—C8—C9 92.1 (2)
C6—N3—C4—C5 −152.48 (17) O7—C8—C9—C14 117.2 (2)
C2—N3—C4—C5 1.34 (19) O7—C8—C9—C10 −66.2 (2)
C6—N3—C4—C15 86.4 (2) C14—C9—C10—C11 −1.4 (3)
C2—N3—C4—C15 −119.80 (17) C8—C9—C10—C11 −178.02 (19)
C2—O1—C5—O5 −176.54 (18) C9—C10—C11—C12 1.8 (3)
C2—O1—C5—C4 4.0 (2) C10—C11—C12—C13 −0.7 (4)
N3—C4—C5—O5 177.38 (19) C11—C12—C13—C14 −0.8 (4)
C15—C4—C5—O5 −60.6 (3) C12—C13—C14—C9 1.2 (3)
N3—C4—C5—O1 −3.20 (19) C10—C9—C14—C13 −0.1 (3)
C15—C4—C5—O1 118.80 (17) C8—C9—C14—C13 176.57 (19)
C2—N3—C6—O6 11.0 (3) N3—C4—C15—C16 62.4 (2)
C4—N3—C6—O6 163.56 (17) C5—C4—C15—C16 −52.3 (2)
C2—N3—C6—O7 −170.34 (15) N3—C4—C15—C17 −172.49 (16)
C4—N3—C6—O7 −17.8 (2) C5—C4—C15—C17 72.8 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2A···O5i 0.97 2.32 3.258 (2) 163
C12—H12A···Cgii 0.93 3.37 3.963 (3) 124

Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CF2183).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bruker (2001). SAINT (Version 6.22), SMART (Version 5.625) and SADABS (Version 2.03). Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Dorow, R. L. & Gingrich, D. E. (1999). Tetrahedron Lett.40, 467–470.
  4. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  5. Pavel, H., Heinrich, L. S. & Edward, W. S. (1993). J. Am. Chem. Soc.116, 3500–3506.
  6. Reddy, G. V., Rao, G. V., Sreevani, V. & Iyengar, D. S. (2000). Tetrahedron Lett.41, 953–954.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808004455/cf2183sup1.cif

e-64-0o685-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004455/cf2183Isup2.hkl

e-64-0o685-Isup2.hkl (67.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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