Abstract
In the title compound, (C5H7N2)[NiCl3(C5H6N2)], the NiII atom is four-coordinated by three chloride anions and one N atom of a 2-aminopyridine ligand, forming a distorted tetrahedral coordination. In the crystal structure, cations and complex anions are linked into chains along the a, b and c axes by N—H⋯Cl hydrogen bonds, leading to the formation of a three-dimensional framework.
Related literature
For related literature, see: Batsanov & Howard (2001 ▶); Bis & Zaworotko (2005 ▶); Chao et al. (1975 ▶); Corain et al. (1985 ▶); Jebas et al. (2006 ▶); Valdés-Martínez et al. (2001 ▶); Sletten & Kovacs (1993 ▶); Smith et al. (2000 ▶, 2001 ▶); Stibrany et al. (2004 ▶); Wei & Willett (1995 ▶); Windholz (1976 ▶).
Experimental
Crystal data
(C5H7N2)[NiCl3(C5H6N2)]
M r = 354.3
Monoclinic,
a = 12.9265 (1) Å
b = 8.0644 (1) Å
c = 13.9893 (1) Å
β = 106.163 (1)°
V = 1400.67 (2) Å3
Z = 4
Mo Kα radiation
μ = 1.94 mm−1
T = 100.0 (1) K
0.37 × 0.08 × 0.07 mm
Data collection
Bruker SMART APEXII CCD area-detector diffractometer with Oxford Cryosystems Cobra low-temperature attachment
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.533, T max = 0.876
19539 measured reflections
6427 independent reflections
5088 reflections with I > 2σ(I)
R int = 0.031
Refinement
R[F 2 > 2σ(F 2)] = 0.035
wR(F 2) = 0.079
S = 1.05
6427 reflections
167 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.52 e Å−3
Δρmin = −0.64 e Å−3
Absolute structure: Flack (1983 ▶), 1953 Friedel pairs
Flack parameter: 0.065 (9)
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005655/ci2566sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005655/ci2566Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Ni1—N1 | 2.0287 (17) |
| Ni1—Cl2 | 2.2625 (6) |
| Ni1—Cl1 | 2.2665 (5) |
| Ni1—Cl3 | 2.2722 (6) |
| N1—Ni1—Cl2 | 114.10 (5) |
| N1—Ni1—Cl1 | 109.21 (5) |
| Cl2—Ni1—Cl1 | 107.77 (2) |
| N1—Ni1—Cl3 | 104.63 (5) |
| Cl2—Ni1—Cl3 | 108.62 (2) |
| Cl1—Ni1—Cl3 | 112.60 (2) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H1N3⋯Cl2i | 0.82 (3) | 2.81 (3) | 3.380 (2) | 128 (2) |
| N2—H2B⋯Cl2 | 0.86 | 2.53 | 3.3475 (19) | 159 |
| N2—H2C⋯Cl1ii | 0.86 | 2.63 | 3.4866 (19) | 172 |
| N4—H4B⋯Cl3i | 0.86 | 2.36 | 3.197 (2) | 165 |
| N4—H4C⋯Cl1iii | 0.86 | 2.54 | 3.344 (2) | 156 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
HKF and SRJ thank the Malaysian Government and Universiti Sains Malaysia for the Science Fund grant No. 305/PFIZIK/613312. SRJ thanks Universiti Sains Malaysia for the award a postdoctoral research fellowship.
supplementary crystallographic information
Comment
2-Aminopyridine is used in the manufacture of pharmaceuticals, especially antihistaminic drugs (Windholz, 1976). As a part of our investigations on the binding modes of 2-aminopyridine with metals, we report here the crystal structure of 2-aminopyridinium (2-aminopyridine)trichloronickel(II).
The asymmetric unit of the title compound contains one 2-aminopyridinium cation and one (2-aminopyridine)trichloronickel(II) anion. Protonation of atom N3 of the uncomplexed 2-aminopyridine results in the widening of the C6—N3—C10 angle to 123.3 (2)°, which is 117.7 (1)° in neutral 2-aminopyridine (Chao et al., 1975). The bond lengths and angles are comparable with those observed in related structures (Bis & Zaworotko, 2005; Smith et al., 2000; Jebas et al., 2006).
In the monomeric complex, the NiII ion is four-coordinated by three Cl anions and the N atom of the 2-aminopyridine ligand, forming a distorted tetrahedral coordination (Fig 1). The Ni—Cl bond lengths (Table 1) are comparable with that reported in the literature (Valdés-Martínez et al., 2001; Batsanov et al., 2001; Sletten & Kovacs, 1993; Corain et al., 1985; Stibrany et al., 2004). The Cl—Ni—Cl bond angles (107.77 (2)° and 108.62 (2)°) are close to the values reported in the literature (Smith et al., 2001; Wei et al., 1995). The dihedral angle between the pyridine and pyridinium rings is 0.9 (2)°.
In the crystal structure, the cations and anionic complexes are stacked into chains along the a, b and c axes and are linked into a three-dimensional framework by N—H···Cl hydrogen bonds (Fig 2).
Experimental
Solutions of 2-aminopyridine and NiCl2.2H2O in water were mixed in a molar ratio of 2:1. Few drops of dilute hydrochloric acid were added to the solution and heated at 363 K for 2 h. Blue crystals of the title compound were obtained by slow evaporation after a period of one week.
Refinement
After checking their presence in a difference map, all H atoms except H1N3 were placed in calculated positions, with C—H = 0.93 Å and N—H = 0.86 Å and refined using a riding model, with Uiso(H) = 1.2Ueq(C,N). Atom H1N3 was refined isotropically.
Figures
Fig. 1.
The asymmetric unit of the title compound, showing 50% probability displacement ellipsoids and the atomic numbering.
Fig. 2.
The crystal packing of the title compound, viewed along the b axis. Hydrogen bonds are shown as dashed lines.
Crystal data
| (C5H7N2)[NiCl3(C5H6N2)] | F000 = 720 |
| Mr = 354.3 | Dx = 1.68 Mg m−3 |
| Monoclinic, Cc | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: C -2yc | Cell parameters from 8411 reflections |
| a = 12.9265 (1) Å | θ = 3.0–30.6º |
| b = 8.0644 (1) Å | µ = 1.94 mm−1 |
| c = 13.9893 (1) Å | T = 100.0 (1) K |
| β = 106.163 (1)º | Block, blue |
| V = 1400.67 (2) Å3 | 0.37 × 0.08 × 0.07 mm |
| Z = 4 |
Data collection
| Bruker SMART APEXII CCD area-detector diffractometer | 5088 reflections with I > 2σ(I) |
| Detector resolution: 8.33 pixels mm-1 | Rint = 0.031 |
| ω scans | θmax = 40.6º |
| Absorption correction: multi-scan(SADABS; Bruker, 2005) | θmin = 3.0º |
| Tmin = 0.533, Tmax = 0.876 | h = −23→23 |
| 19539 measured reflections | k = −14→14 |
| 6427 independent reflections | l = −25→16 |
Refinement
| Refinement on F2 | H atoms treated by a mixture of independent and constrained refinement |
| Least-squares matrix: full | w = 1/[σ2(Fo2) + (0.034P)2] where P = (Fo2 + 2Fc2)/3 |
| R[F2 > 2σ(F2)] = 0.035 | (Δ/σ)max < 0.001 |
| wR(F2) = 0.079 | Δρmax = 0.52 e Å−3 |
| S = 1.05 | Δρmin = −0.64 e Å−3 |
| 6427 reflections | Extinction correction: none |
| 167 parameters | Absolute structure: Flack (1983), 1953 Friedel pairs |
| 2 restraints | Flack parameter: 0.065 (9) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Ni1 | 0.245028 (18) | 0.65589 (3) | 0.188212 (18) | 0.01865 (6) | |
| Cl1 | 0.40142 (4) | 0.66552 (7) | 0.14504 (4) | 0.01889 (9) | |
| Cl2 | 0.19741 (4) | 0.38637 (6) | 0.19116 (4) | 0.02255 (10) | |
| Cl3 | 0.10912 (4) | 0.79387 (7) | 0.07906 (4) | 0.02299 (10) | |
| N1 | 0.26459 (13) | 0.7760 (2) | 0.31947 (12) | 0.0157 (3) | |
| N2 | 0.30301 (15) | 0.5422 (2) | 0.41934 (14) | 0.0228 (4) | |
| H2B | 0.2895 | 0.4816 | 0.3667 | 0.027* | |
| H2C | 0.322 | 0.4966 | 0.4772 | 0.027* | |
| N3 | 0.55299 (14) | 0.0900 (2) | 0.44965 (14) | 0.0191 (3) | |
| N4 | 0.53731 (16) | −0.1509 (2) | 0.35719 (15) | 0.0228 (4) | |
| H4B | 0.5574 | −0.2072 | 0.4114 | 0.027* | |
| H4C | 0.5224 | −0.2007 | 0.3006 | 0.027* | |
| C1 | 0.29457 (15) | 0.7074 (3) | 0.41122 (15) | 0.0181 (4) | |
| C2 | 0.31669 (17) | 0.8074 (3) | 0.49792 (16) | 0.0213 (4) | |
| H2A | 0.3384 | 0.7591 | 0.5607 | 0.026* | |
| C3 | 0.30568 (17) | 0.9761 (3) | 0.48792 (18) | 0.0254 (4) | |
| H3A | 0.3199 | 1.0431 | 0.5442 | 0.03* | |
| C4 | 0.27352 (17) | 1.0463 (3) | 0.39438 (18) | 0.0245 (4) | |
| H4A | 0.2652 | 1.1605 | 0.3867 | 0.029* | |
| C5 | 0.25411 (16) | 0.9441 (3) | 0.31322 (17) | 0.0198 (4) | |
| H5A | 0.2326 | 0.992 | 0.2503 | 0.024* | |
| C6 | 0.52944 (15) | 0.0123 (2) | 0.36071 (15) | 0.0173 (3) | |
| C7 | 0.49768 (16) | 0.1116 (3) | 0.27449 (16) | 0.0203 (4) | |
| H7A | 0.4813 | 0.0628 | 0.2118 | 0.024* | |
| C8 | 0.49108 (16) | 0.2795 (3) | 0.28322 (16) | 0.0217 (4) | |
| H8A | 0.4704 | 0.3447 | 0.2262 | 0.026* | |
| C9 | 0.51508 (17) | 0.3550 (3) | 0.37731 (18) | 0.0229 (4) | |
| H9A | 0.5093 | 0.4693 | 0.3832 | 0.027* | |
| C10 | 0.54691 (16) | 0.2575 (3) | 0.45963 (17) | 0.0222 (4) | |
| H10A | 0.5645 | 0.3051 | 0.5227 | 0.027* | |
| H1N3 | 0.571 (2) | 0.030 (3) | 0.499 (2) | 0.023 (7)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ni1 | 0.02016 (11) | 0.02167 (12) | 0.01419 (12) | −0.00140 (10) | 0.00489 (9) | −0.00168 (10) |
| Cl1 | 0.0188 (2) | 0.0211 (2) | 0.0179 (2) | −0.00022 (15) | 0.00699 (18) | −0.00025 (16) |
| Cl2 | 0.0285 (2) | 0.0194 (2) | 0.0211 (2) | −0.00610 (19) | 0.0092 (2) | −0.00511 (18) |
| Cl3 | 0.0208 (2) | 0.0324 (3) | 0.0142 (2) | 0.00279 (19) | 0.00214 (17) | 0.00196 (19) |
| N1 | 0.0151 (7) | 0.0181 (7) | 0.0133 (7) | −0.0002 (6) | 0.0030 (6) | 0.0000 (6) |
| N2 | 0.0313 (9) | 0.0201 (9) | 0.0150 (8) | 0.0021 (7) | 0.0032 (7) | 0.0003 (6) |
| N3 | 0.0170 (7) | 0.0273 (9) | 0.0132 (8) | 0.0013 (6) | 0.0043 (6) | 0.0020 (7) |
| N4 | 0.0283 (9) | 0.0220 (8) | 0.0168 (9) | −0.0019 (7) | 0.0038 (7) | 0.0029 (6) |
| C1 | 0.0146 (8) | 0.0238 (10) | 0.0165 (9) | 0.0012 (6) | 0.0053 (7) | 0.0011 (7) |
| C2 | 0.0180 (8) | 0.0307 (11) | 0.0149 (9) | −0.0009 (7) | 0.0043 (7) | −0.0018 (8) |
| C3 | 0.0224 (9) | 0.0269 (11) | 0.0278 (12) | −0.0030 (8) | 0.0087 (9) | −0.0105 (9) |
| C4 | 0.0251 (10) | 0.0189 (9) | 0.0309 (12) | −0.0026 (8) | 0.0099 (9) | −0.0067 (9) |
| C5 | 0.0195 (8) | 0.0179 (9) | 0.0224 (10) | −0.0007 (7) | 0.0065 (8) | −0.0002 (8) |
| C6 | 0.0153 (8) | 0.0220 (9) | 0.0142 (9) | −0.0021 (7) | 0.0035 (7) | 0.0011 (7) |
| C7 | 0.0183 (8) | 0.0269 (10) | 0.0145 (9) | 0.0001 (7) | 0.0023 (7) | 0.0026 (8) |
| C8 | 0.0201 (9) | 0.0261 (10) | 0.0185 (10) | 0.0034 (8) | 0.0050 (8) | 0.0059 (8) |
| C9 | 0.0204 (9) | 0.0225 (10) | 0.0272 (12) | 0.0019 (7) | 0.0092 (9) | −0.0010 (8) |
| C10 | 0.0183 (8) | 0.0288 (11) | 0.0200 (10) | 0.0008 (8) | 0.0062 (8) | −0.0052 (8) |
Geometric parameters (Å, °)
| Ni1—N1 | 2.0287 (17) | C2—C3 | 1.371 (3) |
| Ni1—Cl2 | 2.2625 (6) | C2—H2A | 0.93 |
| Ni1—Cl1 | 2.2665 (5) | C3—C4 | 1.380 (3) |
| Ni1—Cl3 | 2.2722 (6) | C3—H3A | 0.93 |
| N1—C1 | 1.352 (3) | C4—C5 | 1.369 (3) |
| N1—C5 | 1.363 (3) | C4—H4A | 0.93 |
| N2—C1 | 1.339 (3) | C5—H5A | 0.93 |
| N2—H2B | 0.86 | C6—C7 | 1.410 (3) |
| N2—H2C | 0.86 | C7—C8 | 1.364 (3) |
| N3—C6 | 1.350 (3) | C7—H7A | 0.93 |
| N3—C10 | 1.362 (3) | C8—C9 | 1.404 (3) |
| N3—H1N3 | 0.82 (3) | C8—H8A | 0.93 |
| N4—C6 | 1.322 (3) | C9—C10 | 1.360 (3) |
| N4—H4B | 0.86 | C9—H9A | 0.93 |
| N4—H4C | 0.86 | C10—H10A | 0.93 |
| C1—C2 | 1.417 (3) | ||
| N1—Ni1—Cl2 | 114.10 (5) | C2—C3—C4 | 120.0 (2) |
| N1—Ni1—Cl1 | 109.21 (5) | C2—C3—H3A | 120 |
| Cl2—Ni1—Cl1 | 107.77 (2) | C4—C3—H3A | 120 |
| N1—Ni1—Cl3 | 104.63 (5) | C5—C4—C3 | 118.5 (2) |
| Cl2—Ni1—Cl3 | 108.62 (2) | C5—C4—H4A | 120.8 |
| Cl1—Ni1—Cl3 | 112.60 (2) | C3—C4—H4A | 120.8 |
| C1—N1—C5 | 117.72 (18) | N1—C5—C4 | 123.6 (2) |
| C1—N1—Ni1 | 126.48 (14) | N1—C5—H5A | 118.2 |
| C5—N1—Ni1 | 115.59 (13) | C4—C5—H5A | 118.2 |
| C1—N2—H2B | 120 | N4—C6—N3 | 119.8 (2) |
| C1—N2—H2C | 120 | N4—C6—C7 | 122.7 (2) |
| H2B—N2—H2C | 120 | N3—C6—C7 | 117.51 (19) |
| C6—N3—C10 | 123.36 (19) | C8—C7—C6 | 119.8 (2) |
| C6—N3—H1N3 | 115.9 (18) | C8—C7—H7A | 120.1 |
| C10—N3—H1N3 | 120.7 (18) | C6—C7—H7A | 120.1 |
| C6—N4—H4B | 120 | C7—C8—C9 | 120.7 (2) |
| C6—N4—H4C | 120 | C7—C8—H8A | 119.6 |
| H4B—N4—H4C | 120 | C9—C8—H8A | 119.6 |
| N2—C1—N1 | 118.88 (18) | C10—C9—C8 | 118.6 (2) |
| N2—C1—C2 | 120.05 (19) | C10—C9—H9A | 120.7 |
| N1—C1—C2 | 121.1 (2) | C8—C9—H9A | 120.7 |
| C3—C2—C1 | 119.1 (2) | C9—C10—N3 | 119.9 (2) |
| C3—C2—H2A | 120.4 | C9—C10—H10A | 120 |
| C1—C2—H2A | 120.4 | N3—C10—H10A | 120 |
| Cl2—Ni1—N1—C1 | 28.37 (17) | C2—C3—C4—C5 | −0.5 (3) |
| Cl1—Ni1—N1—C1 | −92.28 (15) | C1—N1—C5—C4 | 0.8 (3) |
| Cl3—Ni1—N1—C1 | 146.95 (15) | Ni1—N1—C5—C4 | −174.29 (16) |
| Cl2—Ni1—N1—C5 | −156.98 (11) | C3—C4—C5—N1 | 0.1 (3) |
| Cl1—Ni1—N1—C5 | 82.36 (13) | C10—N3—C6—N4 | 179.99 (18) |
| Cl3—Ni1—N1—C5 | −38.41 (13) | C10—N3—C6—C7 | 0.4 (3) |
| C5—N1—C1—N2 | 178.47 (16) | N4—C6—C7—C8 | 179.96 (19) |
| Ni1—N1—C1—N2 | −7.0 (3) | N3—C6—C7—C8 | −0.5 (3) |
| C5—N1—C1—C2 | −1.4 (3) | C6—C7—C8—C9 | −0.3 (3) |
| Ni1—N1—C1—C2 | 173.14 (13) | C7—C8—C9—C10 | 1.1 (3) |
| N2—C1—C2—C3 | −178.84 (18) | C8—C9—C10—N3 | −1.2 (3) |
| N1—C1—C2—C3 | 1.0 (3) | C6—N3—C10—C9 | 0.5 (3) |
| C1—C2—C3—C4 | 0.0 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H1N3···Cl2i | 0.82 (3) | 2.81 (3) | 3.380 (2) | 128 (2) |
| N2—H2B···Cl2 | 0.86 | 2.53 | 3.3475 (19) | 159 |
| N2—H2C···Cl1ii | 0.86 | 2.63 | 3.4866 (19) | 172 |
| N4—H4B···Cl3i | 0.86 | 2.36 | 3.197 (2) | 165 |
| N4—H4C···Cl1iii | 0.86 | 2.54 | 3.344 (2) | 156 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x, −y+1, z+1/2; (iii) x, y−1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI2566).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005655/ci2566sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005655/ci2566Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


