Abstract
In the molecule of the title compound, C13H10ClNO, the benzene and pyrrole rings are oriented at a dihedral angle of 7.37 (12)°. In the crystal structure, intermolecular N—H⋯O hydrogen bonds link the molecules into centrosymmetric R 2 2(10) dimers. There are C—H⋯π interactions between benzene and pyrrole rings and a benzene C—H group. A weak π–π interaction between the pyrrole rings [centroid–centroid distance 3.8515 (11) Å] further stabilizes the structure. There is also a π interaction between the pyrrole ring and the carbonyl group, with a carbon–centroid distance of 3.4825 (18) Å.
Related literature
For general background, see: Varga et al. (2003 ▶); Katritzky & Rees (1984 ▶); Wu et al. (2003 ▶); Nam et al. (2003 ▶); Sondhi et al. (2005 ▶); Miyazaki et al. (2005 ▶). For related literature, see: Powers et al. (1998 ▶); Hu et al. (2006 ▶); Wang et al. (2005 ▶); Zeng & Cen (2006 ▶). For ring motif details, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C13H10ClNO
M r = 231.67
Monoclinic,
a = 13.0401 (7) Å
b = 5.6326 (3) Å
c = 15.6857 (8) Å
β = 94.979 (3)°
V = 1147.76 (10) Å3
Z = 4
Mo Kα radiation
μ = 0.31 mm−1
T = 296 (2) K
0.30 × 0.22 × 0.20 mm
Data collection
Bruker Kappa APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.903, T max = 0.935
13745 measured reflections
3081 independent reflections
2180 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.128
S = 1.02
3081 reflections
185 parameters
All H-atom parameters refined
Δρmax = 0.29 e Å−3
Δρmin = −0.30 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808010362/hk2452sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010362/hk2452Isup2.hkl
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1⋯O1i | 0.83 (2) | 2.12 (2) | 2.902 (2) | 156 (2) |
C3—H3⋯CgAii | 0.938 (18) | 2.897 (17) | 3.6339 (19) | 136.4 (13) |
C6—H6⋯CgBiii | 0.94 (2) | 2.651 (19) | 3.4017 (19) | 137.8 (16) |
Symmetry codes: (i) ; (ii) ; (iii) . CgA and CgB are the centroids of the C1–C6 and N1/C10–C13 rings, respectively.
Acknowledgments
The authors acknowledge the Higher Education Commision, Islamabad, Pakistan, for funding the purchase of the diffractometer.
supplementary crystallographic information
Comment
Chalcones are 1,3-diaryl α,β-unsaturated compounds commonly used as starting materials for the synthesis of several biologically active compounds like pyrimidines and imidazoles (Varga et al., 2003). Most of the chalcones and their derivatives show biological activities such as antimicrobial (Katritzky & Rees, 1984), anti-AIDS (Wu et al., 2003), antimalarial (Nam et al., 2003), anti-inflammatory and analgesic (Sondhi et al., 2005) and antitumor (Miyazaki et al., 2005). While synthesizing different pyrimidine based compounds, we prepared the fine crystals of the title compound, (I), with known method (Powers et al., 1998). We report herein its crystal structure.
The crystal structures of 3-(4-chlorophenyl)-1-(3,4-dimethyl-2,5-dihydro-1H- pyrrol-1-yl)prop-2-enone, (II) (Hu et al., 2006), methyl-3-(1H-pyrrol-2-yl- carboxamido)propionate, (III) (Zeng & Cen, 2006) and 1,3-bis(4-chlorophenyl)- prop-2-en-1-one, (IV) (Wang et al., 2005) have been reported, previously. The title compound, (I), contains the moieties involved in these reported structures.
In the molecule of (I), (Fig. 1), the bond lengths N1-C10 [1.3711 (19) Å], N1-C13 [1.338 (3) Å] and C11-C12 [1.388 (3) Å] are reported as 1.457 (5), 1.461 (5) and 1.328 (6) Å in (II) and 1.369 (2), 1.349 (3) and 1.398 (3) Å in (III), respectively. Rings A (C1-C6) and B (N1/C10-C13) are, of course, planar and they are oriented at a dihedral angle of 7.37 (12)°. So, they are nearly coplanar. The planar central moiety (O1/C7-C9) is oriented with respect to rings A and B at dihedral angles of 8.92 (12)° and 1.94 (15)°, respectively.
In the crystal structure, intermolecular N-H···O hydrogen bonds (Table 1) link the molecules into centrosymmetric R22(10) dimers (Fig. 2) (Bernstein et al., 1995), in which they may be effective in the stabilization of the structure. The C—H···π interactions (Table 1) and π—π interactions between B rings CgB···CgBiv [symmetry code: (iv) -x, -y, 1 - z] further stabilize the structure, with a centroid-centroid distance of 3.8515 (11) Å. There is also a π interaction between the ring B at -x, -y, 1 - z and the carbonyl moiety, with C9-centroid distance of 3.4825 (18) Å.
Experimental
For the preparation of the title compound, a mixture of 4-chlorobenzaldehyde (1.4 g, 10 mmol) and 2-acetyl pyrrole (1.09 g, 10 mmol) was added to MeOH (20 ml) and stirred for 10 min at room temperature. Then, aqueous NaOH solution (10%, 4 ml) was added dropwise with continuous stirring at ambient temperature for 30 min. Light yellow precipitates appeared, to which cold water (40 ml) was added. Yellow colored powder was obtained from the filtrate, which was washed with cold MeOH, and then dried. The residue was recrystallized by dissolving in CHCl3 (10 ml) and adding n-hexane dropwise. Fine yellow crystals were obtained (yield; 1.7 g, 73%, m.p. 420-422 K).
Refinement
H atoms were located in a difference syntheses and refined [N-H = 0.83 (2) Å and Uiso(H) = 0.073 (6) Å2; C-H = 0.937 (19)-0.98 (2) Å and Uiso(H) = 0.062 (5)-0.091 (7) Å2].
Figures
Crystal data
C13H10ClNO | F000 = 480 |
Mr = 231.67 | Dx = 1.341 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2883 reflections |
a = 13.0401 (7) Å | θ = 2.4–28.7º |
b = 5.6326 (3) Å | µ = 0.31 mm−1 |
c = 15.6857 (8) Å | T = 296 (2) K |
β = 94.979 (3)º | Prismatic, light yellow |
V = 1147.76 (10) Å3 | 0.30 × 0.22 × 0.20 mm |
Z = 4 |
Data collection
Bruker KappaAPEXII CCD diffractometer | 3081 independent reflections |
Radiation source: fine-focus sealed tube | 2180 reflections with I > 2σ(I) |
Monochromator: graphite | Rint = 0.026 |
Detector resolution: 7.30 pixels mm-1 | θmax = 29.1º |
T = 296(2) K | θmin = 1.6º |
ω scans | h = −17→17 |
Absorption correction: multi-scan(SADABS; Bruker, 2005) | k = −7→7 |
Tmin = 0.903, Tmax = 0.935 | l = −21→21 |
13745 measured reflections |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.043 | All H-atom parameters refined |
wR(F2) = 0.128 | w = 1/[σ2(Fo2) + (0.0533P)2 + 0.3294P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
3081 reflections | Δρmax = 0.29 e Å−3 |
185 parameters | Δρmin = −0.30 e Å−3 |
Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl | 0.47349 (5) | −0.30082 (12) | 0.06812 (4) | 0.0972 (3) | |
O1 | 0.10949 (10) | 0.4232 (2) | 0.43283 (8) | 0.0672 (4) | |
N1 | 0.05564 (11) | 0.2306 (3) | 0.58749 (10) | 0.0572 (4) | |
C1 | 0.29765 (11) | 0.0517 (3) | 0.26744 (10) | 0.0464 (3) | |
C2 | 0.34920 (13) | −0.1623 (3) | 0.28485 (11) | 0.0525 (4) | |
C3 | 0.40411 (13) | −0.2692 (3) | 0.22394 (12) | 0.0566 (4) | |
C4 | 0.40726 (13) | −0.1631 (3) | 0.14559 (11) | 0.0563 (4) | |
C5 | 0.35867 (14) | 0.0498 (3) | 0.12645 (11) | 0.0588 (4) | |
C6 | 0.30445 (13) | 0.1551 (3) | 0.18805 (11) | 0.0537 (4) | |
C7 | 0.23600 (12) | 0.1706 (3) | 0.32855 (10) | 0.0503 (4) | |
C8 | 0.20870 (13) | 0.0873 (3) | 0.40137 (11) | 0.0548 (4) | |
C9 | 0.14204 (12) | 0.2253 (3) | 0.45499 (11) | 0.0522 (4) | |
C10 | 0.11764 (11) | 0.1179 (3) | 0.53393 (10) | 0.0501 (4) | |
C11 | 0.14707 (13) | −0.0945 (3) | 0.57282 (11) | 0.0566 (4) | |
C12 | 0.10275 (15) | −0.1076 (4) | 0.65000 (13) | 0.0659 (5) | |
C13 | 0.04627 (14) | 0.0958 (4) | 0.65667 (12) | 0.0668 (5) | |
H2 | 0.3481 (14) | −0.236 (3) | 0.3387 (13) | 0.066 (5)* | |
H3 | 0.4387 (13) | −0.413 (3) | 0.2358 (11) | 0.062 (5)* | |
H6 | 0.2713 (14) | 0.300 (4) | 0.1763 (12) | 0.063 (5)* | |
H5 | 0.3607 (15) | 0.124 (4) | 0.0702 (14) | 0.075 (6)* | |
H7 | 0.2116 (14) | 0.324 (4) | 0.3102 (12) | 0.067 (5)* | |
H8 | 0.2289 (15) | −0.069 (4) | 0.4203 (13) | 0.076 (6)* | |
H1 | 0.0220 (17) | 0.353 (4) | 0.5749 (14) | 0.073 (6)* | |
H11 | 0.1896 (14) | −0.211 (3) | 0.5521 (12) | 0.063 (5)* | |
H12 | 0.1118 (15) | −0.226 (4) | 0.6931 (14) | 0.075 (6)* | |
H13 | 0.0089 (17) | 0.150 (4) | 0.7011 (15) | 0.091 (7)* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl | 0.1189 (5) | 0.0979 (5) | 0.0810 (4) | 0.0298 (3) | 0.0442 (3) | −0.0182 (3) |
O1 | 0.0738 (8) | 0.0584 (7) | 0.0716 (8) | 0.0223 (6) | 0.0185 (6) | −0.0044 (6) |
N1 | 0.0521 (7) | 0.0644 (9) | 0.0560 (8) | 0.0095 (7) | 0.0107 (6) | −0.0144 (7) |
C1 | 0.0443 (7) | 0.0442 (7) | 0.0509 (8) | 0.0037 (6) | 0.0063 (6) | −0.0076 (6) |
C2 | 0.0576 (9) | 0.0474 (8) | 0.0535 (9) | 0.0092 (7) | 0.0107 (7) | 0.0012 (7) |
C3 | 0.0576 (9) | 0.0457 (8) | 0.0676 (11) | 0.0115 (7) | 0.0123 (8) | −0.0056 (7) |
C4 | 0.0568 (9) | 0.0561 (9) | 0.0578 (9) | 0.0044 (7) | 0.0144 (7) | −0.0152 (7) |
C5 | 0.0653 (10) | 0.0612 (10) | 0.0512 (9) | 0.0050 (8) | 0.0120 (7) | −0.0006 (8) |
C6 | 0.0584 (9) | 0.0467 (8) | 0.0567 (9) | 0.0107 (7) | 0.0083 (7) | 0.0008 (7) |
C7 | 0.0500 (8) | 0.0475 (8) | 0.0536 (9) | 0.0098 (6) | 0.0062 (6) | −0.0073 (7) |
C8 | 0.0558 (9) | 0.0531 (9) | 0.0565 (9) | 0.0132 (7) | 0.0113 (7) | −0.0078 (7) |
C9 | 0.0481 (8) | 0.0550 (9) | 0.0537 (9) | 0.0078 (7) | 0.0062 (6) | −0.0136 (7) |
C10 | 0.0439 (7) | 0.0546 (9) | 0.0518 (8) | 0.0040 (6) | 0.0048 (6) | −0.0162 (7) |
C11 | 0.0531 (9) | 0.0556 (9) | 0.0614 (10) | 0.0012 (7) | 0.0072 (7) | −0.0107 (8) |
C12 | 0.0647 (10) | 0.0701 (12) | 0.0638 (11) | −0.0064 (9) | 0.0113 (8) | −0.0008 (10) |
C13 | 0.0576 (10) | 0.0844 (13) | 0.0604 (11) | −0.0042 (9) | 0.0163 (8) | −0.0137 (10) |
Geometric parameters (Å, °)
Cl—C4 | 1.7339 (15) | C5—H5 | 0.98 (2) |
O1—C9 | 1.232 (2) | C6—H6 | 0.94 (2) |
N1—C13 | 1.338 (3) | C7—C8 | 1.312 (2) |
N1—C10 | 1.3711 (19) | C7—H7 | 0.96 (2) |
N1—H1 | 0.83 (2) | C8—C9 | 1.481 (2) |
C1—C6 | 1.384 (2) | C8—H8 | 0.96 (2) |
C1—C2 | 1.396 (2) | C9—C10 | 1.438 (2) |
C1—C7 | 1.465 (2) | C10—C11 | 1.382 (2) |
C2—C3 | 1.381 (2) | C11—C12 | 1.388 (3) |
C2—H2 | 0.94 (2) | C11—H11 | 0.937 (19) |
C3—C4 | 1.370 (3) | C12—C13 | 1.371 (3) |
C3—H3 | 0.938 (18) | C12—H12 | 0.95 (2) |
C4—C5 | 1.377 (2) | C13—H13 | 0.94 (2) |
C5—C6 | 1.380 (2) | ||
C13—N1—C10 | 109.55 (16) | C8—C7—C1 | 127.72 (15) |
C13—N1—H1 | 125.3 (15) | C8—C7—H7 | 118.5 (12) |
C10—N1—H1 | 124.5 (15) | C1—C7—H7 | 113.7 (12) |
C6—C1—C2 | 118.16 (14) | C7—C8—C9 | 121.58 (16) |
C6—C1—C7 | 118.54 (14) | C7—C8—H8 | 120.7 (12) |
C2—C1—C7 | 123.29 (15) | C9—C8—H8 | 117.7 (12) |
C3—C2—C1 | 120.73 (16) | O1—C9—C10 | 121.80 (14) |
C3—C2—H2 | 118.7 (12) | O1—C9—C8 | 121.29 (16) |
C1—C2—H2 | 120.6 (12) | C10—C9—C8 | 116.91 (14) |
C4—C3—C2 | 119.22 (16) | N1—C10—C11 | 106.62 (15) |
C4—C3—H3 | 120.2 (11) | N1—C10—C9 | 121.27 (15) |
C2—C3—H3 | 120.5 (11) | C11—C10—C9 | 132.10 (14) |
C3—C4—C5 | 121.75 (15) | C10—C11—C12 | 108.08 (16) |
C3—C4—Cl | 119.27 (13) | C10—C11—H11 | 127.2 (12) |
C5—C4—Cl | 118.98 (14) | C12—C11—H11 | 124.7 (12) |
C4—C5—C6 | 118.40 (16) | C13—C12—C11 | 106.80 (18) |
C4—C5—H5 | 121.3 (12) | C13—C12—H12 | 124.5 (13) |
C6—C5—H5 | 120.3 (12) | C11—C12—H12 | 128.6 (13) |
C5—C6—C1 | 121.72 (15) | N1—C13—C12 | 108.94 (17) |
C5—C6—H6 | 119.6 (12) | N1—C13—H13 | 120.7 (15) |
C1—C6—H6 | 118.7 (12) | C12—C13—H13 | 130.3 (15) |
C6—C1—C2—C3 | −0.9 (2) | C7—C8—C9—O1 | 0.3 (3) |
C7—C1—C2—C3 | 178.38 (16) | C7—C8—C9—C10 | −179.47 (15) |
C1—C2—C3—C4 | −0.3 (3) | C13—N1—C10—C11 | −0.09 (19) |
C2—C3—C4—C5 | 1.2 (3) | C13—N1—C10—C9 | −179.06 (15) |
C2—C3—C4—Cl | −178.39 (13) | O1—C9—C10—N1 | 0.9 (2) |
C3—C4—C5—C6 | −1.0 (3) | C8—C9—C10—N1 | −179.32 (14) |
Cl—C4—C5—C6 | 178.67 (14) | O1—C9—C10—C11 | −177.75 (17) |
C4—C5—C6—C1 | −0.3 (3) | C8—C9—C10—C11 | 2.0 (3) |
C2—C1—C6—C5 | 1.2 (3) | N1—C10—C11—C12 | −0.27 (19) |
C7—C1—C6—C5 | −178.12 (15) | C9—C10—C11—C12 | 178.54 (17) |
C6—C1—C7—C8 | 170.00 (17) | C10—C11—C12—C13 | 0.5 (2) |
C2—C1—C7—C8 | −9.3 (3) | C10—N1—C13—C12 | 0.4 (2) |
C1—C7—C8—C9 | −177.33 (15) | C11—C12—C13—N1 | −0.6 (2) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.83 (2) | 2.12 (2) | 2.902 (2) | 156 (2) |
C3—H3···CgAii | 0.938 (18) | 2.897 (17) | 3.6339 (19) | 136.4 (13) |
C6—H6···CgBiii | 0.94 (2) | 2.651 (19) | 3.4017 (19) | 137.8 (16) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, y−1/2, −z+1/2; (iii) x, −y−1/2, z−3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2452).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808010362/hk2452sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010362/hk2452Isup2.hkl