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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Apr 26;64(Pt 5):o918. doi: 10.1107/S160053680801101X

5-Bromo-1H-indole-3-carbaldehyde thio­semicarbazone

Mohd Razali Rizal a, Hapipah Mohd Ali a, Seik Weng Ng a,*
PMCID: PMC2961179  PMID: 21202400

Abstract

In the essentially planar title mol­ecule, C10H9BrN4S, the C=N double bond is in a trans configuration. In the crystal structure, the S atom acts as a hydrogen-bond acceptor for the aromatic NH, aliphatic NH and terminal NH2 groups of three symmetry-related mol­ecules, forming a weak hydrogen-bonded layer structure.

Related literature

For a previous synthesis of the title compound, see: Dubey & Babu (2006). For related literature, see: Doyle et al. (1956); French & Blanz (1966); Fukukawa et al. (1966); Libermann et al. (1953); Usi (1968); Weller et al. (1954).graphic file with name e-64-0o918-scheme1.jpg

Experimental

Crystal data

  • C10H9BrN4S

  • M r = 297.18

  • Triclinic, Inline graphic

  • a = 6.7731 (2) Å

  • b = 8.7551 (2) Å

  • c = 10.6539 (2) Å

  • α = 69.280 (1)°

  • β = 79.969 (1)°

  • γ = 72.886 (1)°

  • V = 563.00 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 3.81 mm−1

  • T = 100 (2) K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.381, T max = 0.516 (expected range = 0.344–0.467)

  • 6176 measured reflections

  • 2563 independent reflections

  • 2281 reflections with I > 2σ(I)

  • R int = 0.025

Refinement

  • R[F 2 > 2σ(F 2)] = 0.024

  • wR(F 2) = 0.066

  • S = 1.06

  • 2563 reflections

  • 161 parameters

  • 4 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801101X/lh2609sup1.cif

e-64-0o918-sup1.cif (15KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680801101X/lh2609Isup2.hkl

e-64-0o918-Isup2.hkl (125.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1n⋯S1i 0.88 (1) 2.60 (2) 3.390 (2) 150 (3)
N3—H3n⋯S1ii 0.88 (1) 2.65 (1) 3.508 (2) 167 (2)
N4—H4n1⋯S1iii 0.88 (1) 2.74 (1) 3.569 (2) 158 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We thank the Science Fund (12–02-03–2031) for supporting this study, and the University of Malaya for the purchase of the diffractometer.

supplementary crystallographic information

Comment

Indole-3-carboxaldehyde thiosemicarbazone and its substituted analogs possess useful medicinal properties; such activity has been known for a long time (Doyle et al., 1956; French & Blanz, 1966; Fukukawa et al., 1966; Libermann et al., 1953; Usi, 1968; Weller et al., 1954). The compounds, in the form of their metal derivatives, have been assesses for similar activity.

In the title compound (I) (Fig. 1), the double-bonded sulfur atom is a hydrogen-bond acceptor for the aromatic -N-H, aliphatic -N-H and terminal -NH2 groups of three adjacent molecules, forming a weak hydrogen-bonded layer structure.

Experimental

5-Bromoindole-3-carboxaldehyde (0.3 g, 1.3 mmol) and thiosemicarbazide (0.12 g, 1.3 mmol) were heated in ethanol (50 ml) for an hour. The solvent was removed and the product and recrystallized from ethanol.

Refinement

Carbon-bound H atoms were placed in calculated positions, and were included in the refinement in the riding model approximation. The nitrogen-bound H atoms were located in a difference Fourier map, and were refined with a distance restraint of N–H 0.88±0.01 Å; their temperature factors were freely refined.

Figures

Fig. 1.

Fig. 1.

The title molecule drawn using 70% probabilty ellipsoids. Hydrogen atoms are drawn as spheres of arbitrary radius.

Crystal data

C10H9BrN4S Z = 2
Mr = 297.18 F000 = 296
Triclinic, P1 Dx = 1.753 Mg m3
Hall symbol: -P 1 Mo Kα radiation λ = 0.71073 Å
a = 6.7731 (2) Å Cell parameters from 6604 reflections
b = 8.7551 (2) Å θ = 4.0–28.3º
c = 10.6539 (2) Å µ = 3.81 mm1
α = 69.280 (1)º T = 100 (2) K
β = 79.969 (1)º Block, yellow
γ = 72.886 (1)º 0.30 × 0.20 × 0.20 mm
V = 563.00 (2) Å3

Data collection

Bruker SMART APEX diffractometer 2563 independent reflections
Radiation source: fine-focus sealed tube 2281 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.025
T = 100(2) K θmax = 27.5º
ω scans θmin = 2.1º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) h = −6→8
Tmin = 0.381, Tmax = 0.516 k = −11→11
6176 measured reflections l = −13→13

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.066   w = 1/[σ2(Fo2) + (0.0383P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max = 0.001
2563 reflections Δρmax = 0.36 e Å3
161 parameters Δρmin = −0.40 e Å3
4 restraints Extinction correction: none
Primary atom site location: structure-invariant direct methods

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.51693 (4) 0.13022 (2) 0.31237 (2) 0.02102 (9)
S1 0.01187 (9) 0.22591 (6) 1.06142 (5) 0.01534 (12)
N1 0.2717 (3) 0.8577 (2) 0.27383 (17) 0.0153 (4)
N2 0.1383 (3) 0.4698 (2) 0.68281 (16) 0.0116 (3)
N3 0.0718 (3) 0.4342 (2) 0.81750 (16) 0.0118 (3)
N4 0.1492 (3) 0.1567 (2) 0.83268 (18) 0.0169 (4)
C1 0.1846 (3) 0.8475 (3) 0.4006 (2) 0.0151 (4)
H1 0.1266 0.9415 0.4320 0.018*
C2 0.3383 (3) 0.6981 (2) 0.2626 (2) 0.0122 (4)
C3 0.4355 (3) 0.6471 (3) 0.1529 (2) 0.0142 (4)
H3 0.4641 0.7265 0.0687 0.017*
C4 0.4889 (3) 0.4765 (3) 0.1711 (2) 0.0131 (4)
H4 0.5573 0.4359 0.0990 0.016*
C5 0.4422 (3) 0.3633 (2) 0.2960 (2) 0.0127 (4)
C6 0.3464 (3) 0.4108 (2) 0.40581 (19) 0.0118 (4)
H6 0.3184 0.3300 0.4893 0.014*
C7 0.2917 (3) 0.5832 (2) 0.38933 (19) 0.0109 (4)
C8 0.1921 (3) 0.6825 (2) 0.4770 (2) 0.0120 (4)
C9 0.1249 (3) 0.6266 (2) 0.6176 (2) 0.0127 (4)
H9 0.0693 0.7074 0.6633 0.015*
C10 0.0822 (3) 0.2737 (2) 0.8937 (2) 0.0123 (4)
H1N 0.254 (5) 0.953 (2) 0.207 (2) 0.028 (7)*
H3N 0.037 (4) 0.510 (2) 0.858 (2) 0.013 (6)*
H4N1 0.137 (4) 0.0533 (17) 0.876 (2) 0.023 (7)*
H4N2 0.173 (5) 0.190 (4) 0.7452 (11) 0.035 (8)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.02971 (15) 0.01243 (12) 0.02039 (12) −0.00512 (9) 0.00410 (9) −0.00765 (8)
S1 0.0217 (3) 0.0111 (2) 0.0101 (2) −0.0029 (2) 0.00152 (19) −0.00200 (18)
N1 0.0190 (10) 0.0104 (8) 0.0119 (8) −0.0022 (7) 0.0015 (7) −0.0005 (6)
N2 0.0105 (8) 0.0144 (8) 0.0100 (8) −0.0056 (6) 0.0021 (6) −0.0034 (6)
N3 0.0154 (9) 0.0112 (8) 0.0091 (7) −0.0032 (7) 0.0020 (6) −0.0051 (6)
N4 0.0239 (10) 0.0117 (8) 0.0144 (8) −0.0050 (7) 0.0044 (7) −0.0056 (7)
C1 0.0176 (11) 0.0133 (9) 0.0127 (9) −0.0021 (8) 0.0005 (8) −0.0045 (8)
C2 0.0120 (10) 0.0108 (9) 0.0134 (9) −0.0032 (7) −0.0023 (8) −0.0025 (7)
C3 0.0121 (10) 0.0167 (10) 0.0119 (9) −0.0036 (8) −0.0015 (8) −0.0022 (7)
C4 0.0109 (10) 0.0174 (10) 0.0111 (9) −0.0028 (8) −0.0020 (7) −0.0049 (7)
C5 0.0113 (10) 0.0106 (9) 0.0165 (9) −0.0031 (7) −0.0014 (8) −0.0042 (7)
C6 0.0102 (10) 0.0124 (9) 0.0117 (9) −0.0030 (7) −0.0017 (7) −0.0021 (7)
C7 0.0090 (10) 0.0132 (9) 0.0103 (9) −0.0028 (7) −0.0012 (7) −0.0032 (7)
C8 0.0114 (10) 0.0116 (9) 0.0131 (9) −0.0035 (8) −0.0011 (7) −0.0037 (7)
C9 0.0107 (10) 0.0137 (9) 0.0133 (9) −0.0024 (8) −0.0003 (8) −0.0049 (7)
C10 0.0103 (10) 0.0129 (9) 0.0130 (9) −0.0029 (7) 0.0001 (7) −0.0038 (7)

Geometric parameters (Å, °)

Br1—C5 1.9032 (19) C1—H1 0.9500
S1—C10 1.699 (2) C2—C3 1.388 (3)
N1—C1 1.359 (3) C2—C7 1.418 (3)
N1—C2 1.378 (3) C3—C4 1.379 (3)
N1—H1N 0.878 (10) C3—H3 0.9500
N2—C9 1.284 (3) C4—C5 1.399 (3)
N2—N3 1.378 (2) C4—H4 0.9500
N3—C10 1.339 (3) C5—C6 1.372 (3)
N3—H3N 0.876 (10) C6—C7 1.398 (3)
N4—C10 1.331 (3) C6—H6 0.9500
N4—H4N1 0.880 (10) C7—C8 1.447 (3)
N4—H4N2 0.873 (10) C8—C9 1.437 (3)
C1—C8 1.376 (3) C9—H9 0.9500
C1—N1—C2 109.25 (17) C3—C4—H4 120.1
C1—N1—H1N 122.5 (19) C5—C4—H4 120.1
C2—N1—H1N 126.2 (18) C6—C5—C4 123.94 (18)
C9—N2—N3 115.12 (17) C6—C5—Br1 118.76 (15)
C10—N3—N2 119.25 (16) C4—C5—Br1 117.30 (15)
C10—N3—H3N 117.5 (16) C5—C6—C7 117.04 (18)
N2—N3—H3N 122.8 (16) C5—C6—H6 121.5
C10—N4—H4N1 119.9 (17) C7—C6—H6 121.5
C10—N4—H4N2 118.1 (19) C6—C7—C2 119.09 (17)
H4N1—N4—H4N2 120 (3) C6—C7—C8 134.17 (18)
N1—C1—C8 110.69 (18) C2—C7—C8 106.75 (17)
N1—C1—H1 124.7 C1—C8—C9 124.92 (18)
C8—C1—H1 124.7 C1—C8—C7 105.86 (17)
N1—C2—C3 129.70 (18) C9—C8—C7 129.10 (18)
N1—C2—C7 107.45 (17) N2—C9—C8 121.41 (18)
C3—C2—C7 122.85 (18) N2—C9—H9 119.3
C4—C3—C2 117.27 (18) C8—C9—H9 119.3
C4—C3—H3 121.4 N4—C10—N3 117.36 (18)
C2—C3—H3 121.4 N4—C10—S1 122.58 (16)
C3—C4—C5 119.81 (18) N3—C10—S1 120.06 (15)
C9—N2—N3—C10 −179.30 (19) C3—C2—C7—C6 0.3 (3)
C2—N1—C1—C8 0.5 (3) N1—C2—C7—C8 0.4 (2)
C1—N1—C2—C3 180.0 (2) C3—C2—C7—C8 179.9 (2)
C1—N1—C2—C7 −0.6 (2) N1—C1—C8—C9 176.0 (2)
N1—C2—C3—C4 178.9 (2) N1—C1—C8—C7 −0.2 (3)
C7—C2—C3—C4 −0.6 (3) C6—C7—C8—C1 179.4 (2)
C2—C3—C4—C5 0.8 (3) C2—C7—C8—C1 −0.2 (2)
C3—C4—C5—C6 −0.8 (3) C6—C7—C8—C9 3.4 (4)
C3—C4—C5—Br1 179.01 (16) C2—C7—C8—C9 −176.2 (2)
C4—C5—C6—C7 0.6 (3) N3—N2—C9—C8 178.80 (19)
Br1—C5—C6—C7 −179.25 (15) C1—C8—C9—N2 −179.4 (2)
C5—C6—C7—C2 −0.3 (3) C7—C8—C9—N2 −4.0 (4)
C5—C6—C7—C8 −179.8 (2) N2—N3—C10—N4 −2.8 (3)
N1—C2—C7—C6 −179.18 (18) N2—N3—C10—S1 177.10 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1n···S1i 0.88 (1) 2.60 (2) 3.390 (2) 150 (3)
N3—H3n···S1ii 0.88 (1) 2.65 (1) 3.508 (2) 167 (2)
N4—H4n1···S1iii 0.88 (1) 2.74 (1) 3.569 (2) 158 (2)

Symmetry codes: (i) x, y+1, z−1; (ii) −x, −y+1, −z+2; (iii) −x, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2609).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Doyle, F. P., Ferrier, W., Holland, D. O., Mehta, M. D. & Nayler, J. H. C. (1956). J. Chem. Soc. pp. 2853–2857.
  4. Dubey, P. K. & Babu, B. (2006). Ind. J. Heterocycl. Chem.15, 209–219.
  5. French, F. A. & Blanz, E. J. (1966). J. Med. Chem.9, 585–589. [DOI] [PubMed]
  6. Fukukawa, F., Isao, Y., Seno, T., Sasaki, M., Naito, M. & Shunji, T. (1966). Yakaguka Zasshi, 86, 801–804.
  7. Libermann, D., Moyeux, M., Rouaix, A., Maillard, J., Hengl, L., Himbert, J. & Theraplix, M. (1953). Bull. Soc. Chim. Fr. pp. 957–962.
  8. Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  10. Usi, Y. (1968). Ann. Rep. Takeda Res. Lab.27, 144–158.
  11. Weller, L. E., Sell, H. M. & Gotshall, R. Y. (1954). J. Am. Chem. Soc.76, 1959.
  12. Westrip, S. P. (2008). publCIF In preparation.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801101X/lh2609sup1.cif

e-64-0o918-sup1.cif (15KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053680801101X/lh2609Isup2.hkl

e-64-0o918-Isup2.hkl (125.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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