Abstract
In the essentially planar title molecule, C10H9BrN4S, the C=N double bond is in a trans configuration. In the crystal structure, the S atom acts as a hydrogen-bond acceptor for the aromatic NH, aliphatic NH and terminal NH2 groups of three symmetry-related molecules, forming a weak hydrogen-bonded layer structure.
Related literature
For a previous synthesis of the title compound, see: Dubey & Babu (2006 ▶). For related literature, see: Doyle et al. (1956 ▶); French & Blanz (1966 ▶); Fukukawa et al. (1966 ▶); Libermann et al. (1953 ▶); Usi (1968 ▶); Weller et al. (1954 ▶).
Experimental
Crystal data
C10H9BrN4S
M r = 297.18
Triclinic,
a = 6.7731 (2) Å
b = 8.7551 (2) Å
c = 10.6539 (2) Å
α = 69.280 (1)°
β = 79.969 (1)°
γ = 72.886 (1)°
V = 563.00 (2) Å3
Z = 2
Mo Kα radiation
μ = 3.81 mm−1
T = 100 (2) K
0.30 × 0.20 × 0.20 mm
Data collection
Bruker SMART APEX diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.381, T max = 0.516 (expected range = 0.344–0.467)
6176 measured reflections
2563 independent reflections
2281 reflections with I > 2σ(I)
R int = 0.025
Refinement
R[F 2 > 2σ(F 2)] = 0.024
wR(F 2) = 0.066
S = 1.06
2563 reflections
161 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.36 e Å−3
Δρmin = −0.40 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801101X/lh2609sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680801101X/lh2609Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1n⋯S1i | 0.88 (1) | 2.60 (2) | 3.390 (2) | 150 (3) |
| N3—H3n⋯S1ii | 0.88 (1) | 2.65 (1) | 3.508 (2) | 167 (2) |
| N4—H4n1⋯S1iii | 0.88 (1) | 2.74 (1) | 3.569 (2) | 158 (2) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
We thank the Science Fund (12–02-03–2031) for supporting this study, and the University of Malaya for the purchase of the diffractometer.
supplementary crystallographic information
Comment
Indole-3-carboxaldehyde thiosemicarbazone and its substituted analogs possess useful medicinal properties; such activity has been known for a long time (Doyle et al., 1956; French & Blanz, 1966; Fukukawa et al., 1966; Libermann et al., 1953; Usi, 1968; Weller et al., 1954). The compounds, in the form of their metal derivatives, have been assesses for similar activity.
In the title compound (I) (Fig. 1), the double-bonded sulfur atom is a hydrogen-bond acceptor for the aromatic -N-H, aliphatic -N-H and terminal -NH2 groups of three adjacent molecules, forming a weak hydrogen-bonded layer structure.
Experimental
5-Bromoindole-3-carboxaldehyde (0.3 g, 1.3 mmol) and thiosemicarbazide (0.12 g, 1.3 mmol) were heated in ethanol (50 ml) for an hour. The solvent was removed and the product and recrystallized from ethanol.
Refinement
Carbon-bound H atoms were placed in calculated positions, and were included in the refinement in the riding model approximation. The nitrogen-bound H atoms were located in a difference Fourier map, and were refined with a distance restraint of N–H 0.88±0.01 Å; their temperature factors were freely refined.
Figures
Fig. 1.
The title molecule drawn using 70% probabilty ellipsoids. Hydrogen atoms are drawn as spheres of arbitrary radius.
Crystal data
| C10H9BrN4S | Z = 2 |
| Mr = 297.18 | F000 = 296 |
| Triclinic, P1 | Dx = 1.753 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
| a = 6.7731 (2) Å | Cell parameters from 6604 reflections |
| b = 8.7551 (2) Å | θ = 4.0–28.3º |
| c = 10.6539 (2) Å | µ = 3.81 mm−1 |
| α = 69.280 (1)º | T = 100 (2) K |
| β = 79.969 (1)º | Block, yellow |
| γ = 72.886 (1)º | 0.30 × 0.20 × 0.20 mm |
| V = 563.00 (2) Å3 |
Data collection
| Bruker SMART APEX diffractometer | 2563 independent reflections |
| Radiation source: fine-focus sealed tube | 2281 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.025 |
| T = 100(2) K | θmax = 27.5º |
| ω scans | θmin = 2.1º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −6→8 |
| Tmin = 0.381, Tmax = 0.516 | k = −11→11 |
| 6176 measured reflections | l = −13→13 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.024 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0383P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max = 0.001 |
| 2563 reflections | Δρmax = 0.36 e Å−3 |
| 161 parameters | Δρmin = −0.40 e Å−3 |
| 4 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Br1 | 0.51693 (4) | 0.13022 (2) | 0.31237 (2) | 0.02102 (9) | |
| S1 | 0.01187 (9) | 0.22591 (6) | 1.06142 (5) | 0.01534 (12) | |
| N1 | 0.2717 (3) | 0.8577 (2) | 0.27383 (17) | 0.0153 (4) | |
| N2 | 0.1383 (3) | 0.4698 (2) | 0.68281 (16) | 0.0116 (3) | |
| N3 | 0.0718 (3) | 0.4342 (2) | 0.81750 (16) | 0.0118 (3) | |
| N4 | 0.1492 (3) | 0.1567 (2) | 0.83268 (18) | 0.0169 (4) | |
| C1 | 0.1846 (3) | 0.8475 (3) | 0.4006 (2) | 0.0151 (4) | |
| H1 | 0.1266 | 0.9415 | 0.4320 | 0.018* | |
| C2 | 0.3383 (3) | 0.6981 (2) | 0.2626 (2) | 0.0122 (4) | |
| C3 | 0.4355 (3) | 0.6471 (3) | 0.1529 (2) | 0.0142 (4) | |
| H3 | 0.4641 | 0.7265 | 0.0687 | 0.017* | |
| C4 | 0.4889 (3) | 0.4765 (3) | 0.1711 (2) | 0.0131 (4) | |
| H4 | 0.5573 | 0.4359 | 0.0990 | 0.016* | |
| C5 | 0.4422 (3) | 0.3633 (2) | 0.2960 (2) | 0.0127 (4) | |
| C6 | 0.3464 (3) | 0.4108 (2) | 0.40581 (19) | 0.0118 (4) | |
| H6 | 0.3184 | 0.3300 | 0.4893 | 0.014* | |
| C7 | 0.2917 (3) | 0.5832 (2) | 0.38933 (19) | 0.0109 (4) | |
| C8 | 0.1921 (3) | 0.6825 (2) | 0.4770 (2) | 0.0120 (4) | |
| C9 | 0.1249 (3) | 0.6266 (2) | 0.6176 (2) | 0.0127 (4) | |
| H9 | 0.0693 | 0.7074 | 0.6633 | 0.015* | |
| C10 | 0.0822 (3) | 0.2737 (2) | 0.8937 (2) | 0.0123 (4) | |
| H1N | 0.254 (5) | 0.953 (2) | 0.207 (2) | 0.028 (7)* | |
| H3N | 0.037 (4) | 0.510 (2) | 0.858 (2) | 0.013 (6)* | |
| H4N1 | 0.137 (4) | 0.0533 (17) | 0.876 (2) | 0.023 (7)* | |
| H4N2 | 0.173 (5) | 0.190 (4) | 0.7452 (11) | 0.035 (8)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Br1 | 0.02971 (15) | 0.01243 (12) | 0.02039 (12) | −0.00512 (9) | 0.00410 (9) | −0.00765 (8) |
| S1 | 0.0217 (3) | 0.0111 (2) | 0.0101 (2) | −0.0029 (2) | 0.00152 (19) | −0.00200 (18) |
| N1 | 0.0190 (10) | 0.0104 (8) | 0.0119 (8) | −0.0022 (7) | 0.0015 (7) | −0.0005 (6) |
| N2 | 0.0105 (8) | 0.0144 (8) | 0.0100 (8) | −0.0056 (6) | 0.0021 (6) | −0.0034 (6) |
| N3 | 0.0154 (9) | 0.0112 (8) | 0.0091 (7) | −0.0032 (7) | 0.0020 (6) | −0.0051 (6) |
| N4 | 0.0239 (10) | 0.0117 (8) | 0.0144 (8) | −0.0050 (7) | 0.0044 (7) | −0.0056 (7) |
| C1 | 0.0176 (11) | 0.0133 (9) | 0.0127 (9) | −0.0021 (8) | 0.0005 (8) | −0.0045 (8) |
| C2 | 0.0120 (10) | 0.0108 (9) | 0.0134 (9) | −0.0032 (7) | −0.0023 (8) | −0.0025 (7) |
| C3 | 0.0121 (10) | 0.0167 (10) | 0.0119 (9) | −0.0036 (8) | −0.0015 (8) | −0.0022 (7) |
| C4 | 0.0109 (10) | 0.0174 (10) | 0.0111 (9) | −0.0028 (8) | −0.0020 (7) | −0.0049 (7) |
| C5 | 0.0113 (10) | 0.0106 (9) | 0.0165 (9) | −0.0031 (7) | −0.0014 (8) | −0.0042 (7) |
| C6 | 0.0102 (10) | 0.0124 (9) | 0.0117 (9) | −0.0030 (7) | −0.0017 (7) | −0.0021 (7) |
| C7 | 0.0090 (10) | 0.0132 (9) | 0.0103 (9) | −0.0028 (7) | −0.0012 (7) | −0.0032 (7) |
| C8 | 0.0114 (10) | 0.0116 (9) | 0.0131 (9) | −0.0035 (8) | −0.0011 (7) | −0.0037 (7) |
| C9 | 0.0107 (10) | 0.0137 (9) | 0.0133 (9) | −0.0024 (8) | −0.0003 (8) | −0.0049 (7) |
| C10 | 0.0103 (10) | 0.0129 (9) | 0.0130 (9) | −0.0029 (7) | 0.0001 (7) | −0.0038 (7) |
Geometric parameters (Å, °)
| Br1—C5 | 1.9032 (19) | C1—H1 | 0.9500 |
| S1—C10 | 1.699 (2) | C2—C3 | 1.388 (3) |
| N1—C1 | 1.359 (3) | C2—C7 | 1.418 (3) |
| N1—C2 | 1.378 (3) | C3—C4 | 1.379 (3) |
| N1—H1N | 0.878 (10) | C3—H3 | 0.9500 |
| N2—C9 | 1.284 (3) | C4—C5 | 1.399 (3) |
| N2—N3 | 1.378 (2) | C4—H4 | 0.9500 |
| N3—C10 | 1.339 (3) | C5—C6 | 1.372 (3) |
| N3—H3N | 0.876 (10) | C6—C7 | 1.398 (3) |
| N4—C10 | 1.331 (3) | C6—H6 | 0.9500 |
| N4—H4N1 | 0.880 (10) | C7—C8 | 1.447 (3) |
| N4—H4N2 | 0.873 (10) | C8—C9 | 1.437 (3) |
| C1—C8 | 1.376 (3) | C9—H9 | 0.9500 |
| C1—N1—C2 | 109.25 (17) | C3—C4—H4 | 120.1 |
| C1—N1—H1N | 122.5 (19) | C5—C4—H4 | 120.1 |
| C2—N1—H1N | 126.2 (18) | C6—C5—C4 | 123.94 (18) |
| C9—N2—N3 | 115.12 (17) | C6—C5—Br1 | 118.76 (15) |
| C10—N3—N2 | 119.25 (16) | C4—C5—Br1 | 117.30 (15) |
| C10—N3—H3N | 117.5 (16) | C5—C6—C7 | 117.04 (18) |
| N2—N3—H3N | 122.8 (16) | C5—C6—H6 | 121.5 |
| C10—N4—H4N1 | 119.9 (17) | C7—C6—H6 | 121.5 |
| C10—N4—H4N2 | 118.1 (19) | C6—C7—C2 | 119.09 (17) |
| H4N1—N4—H4N2 | 120 (3) | C6—C7—C8 | 134.17 (18) |
| N1—C1—C8 | 110.69 (18) | C2—C7—C8 | 106.75 (17) |
| N1—C1—H1 | 124.7 | C1—C8—C9 | 124.92 (18) |
| C8—C1—H1 | 124.7 | C1—C8—C7 | 105.86 (17) |
| N1—C2—C3 | 129.70 (18) | C9—C8—C7 | 129.10 (18) |
| N1—C2—C7 | 107.45 (17) | N2—C9—C8 | 121.41 (18) |
| C3—C2—C7 | 122.85 (18) | N2—C9—H9 | 119.3 |
| C4—C3—C2 | 117.27 (18) | C8—C9—H9 | 119.3 |
| C4—C3—H3 | 121.4 | N4—C10—N3 | 117.36 (18) |
| C2—C3—H3 | 121.4 | N4—C10—S1 | 122.58 (16) |
| C3—C4—C5 | 119.81 (18) | N3—C10—S1 | 120.06 (15) |
| C9—N2—N3—C10 | −179.30 (19) | C3—C2—C7—C6 | 0.3 (3) |
| C2—N1—C1—C8 | 0.5 (3) | N1—C2—C7—C8 | 0.4 (2) |
| C1—N1—C2—C3 | 180.0 (2) | C3—C2—C7—C8 | 179.9 (2) |
| C1—N1—C2—C7 | −0.6 (2) | N1—C1—C8—C9 | 176.0 (2) |
| N1—C2—C3—C4 | 178.9 (2) | N1—C1—C8—C7 | −0.2 (3) |
| C7—C2—C3—C4 | −0.6 (3) | C6—C7—C8—C1 | 179.4 (2) |
| C2—C3—C4—C5 | 0.8 (3) | C2—C7—C8—C1 | −0.2 (2) |
| C3—C4—C5—C6 | −0.8 (3) | C6—C7—C8—C9 | 3.4 (4) |
| C3—C4—C5—Br1 | 179.01 (16) | C2—C7—C8—C9 | −176.2 (2) |
| C4—C5—C6—C7 | 0.6 (3) | N3—N2—C9—C8 | 178.80 (19) |
| Br1—C5—C6—C7 | −179.25 (15) | C1—C8—C9—N2 | −179.4 (2) |
| C5—C6—C7—C2 | −0.3 (3) | C7—C8—C9—N2 | −4.0 (4) |
| C5—C6—C7—C8 | −179.8 (2) | N2—N3—C10—N4 | −2.8 (3) |
| N1—C2—C7—C6 | −179.18 (18) | N2—N3—C10—S1 | 177.10 (15) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1n···S1i | 0.88 (1) | 2.60 (2) | 3.390 (2) | 150 (3) |
| N3—H3n···S1ii | 0.88 (1) | 2.65 (1) | 3.508 (2) | 167 (2) |
| N4—H4n1···S1iii | 0.88 (1) | 2.74 (1) | 3.569 (2) | 158 (2) |
Symmetry codes: (i) x, y+1, z−1; (ii) −x, −y+1, −z+2; (iii) −x, −y, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2609).
References
- Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Doyle, F. P., Ferrier, W., Holland, D. O., Mehta, M. D. & Nayler, J. H. C. (1956). J. Chem. Soc. pp. 2853–2857.
- Dubey, P. K. & Babu, B. (2006). Ind. J. Heterocycl. Chem.15, 209–219.
- French, F. A. & Blanz, E. J. (1966). J. Med. Chem.9, 585–589. [DOI] [PubMed]
- Fukukawa, F., Isao, Y., Seno, T., Sasaki, M., Naito, M. & Shunji, T. (1966). Yakaguka Zasshi, 86, 801–804.
- Libermann, D., Moyeux, M., Rouaix, A., Maillard, J., Hengl, L., Himbert, J. & Theraplix, M. (1953). Bull. Soc. Chim. Fr. pp. 957–962.
- Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Usi, Y. (1968). Ann. Rep. Takeda Res. Lab.27, 144–158.
- Weller, L. E., Sell, H. M. & Gotshall, R. Y. (1954). J. Am. Chem. Soc.76, 1959.
- Westrip, S. P. (2008). publCIF In preparation.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801101X/lh2609sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680801101X/lh2609Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

