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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Apr 4;64(Pt 5):o796. doi: 10.1107/S1600536808006557

(Z)-1,3,4a-Trimethyl-5,5-diphenyl-6-oxa-1,3-diaza­bicyclo­[4.2.0]octane-2,4-dione

Zhi-Cai Lin a, Jing-Bo Shi a, Wen-Jian Tang a,*, Jun Li a
PMCID: PMC2961230  PMID: 21202288

Abstract

The title compound, C20H20N2O3, is a head-to-tail oxetane, one of the regioisomers obtained by the the Paternó–Büchi reaction of 1,3-dimethyl­thymine with benzophenone. The oxetane ring is folded, the dihedral angle between the C—O—C and C—C—C planes being 14.4 (2)°. The dihedral angle between the two phenyl rings is 64.3 (2)°. The pyrimidine ring adopts a boat conformation. The crystal structure involves weak C—H⋯O hydrogen bonds.

Related literature

For related literature, see: Hei et al. (2005); Prakash et al. (1997).graphic file with name e-64-0o796-scheme1.jpg

Experimental

Crystal data

  • C20H20N2O3

  • M r = 336.38

  • Monoclinic, Inline graphic

  • a = 8.1341 (7) Å

  • b = 9.1004 (13) Å

  • c = 23.485 (2) Å

  • β = 97.334 (2)°

  • V = 1724.2 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 298 (2) K

  • 0.45 × 0.41 × 0.18 mm

Data collection

  • Bruker SMART diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.962, T max = 0.984

  • 8774 measured reflections

  • 3039 independent reflections

  • 1818 reflections with I > 2σ(I)

  • R int = 0.036

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.117

  • S = 1.01

  • 3039 reflections

  • 226 parameters

  • H-atom parameters constrained

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808006557/wn2239sup1.cif

e-64-0o796-sup1.cif (20.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006557/wn2239Isup2.hkl

e-64-0o796-Isup2.hkl (149.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C3—H3⋯O2i 0.98 2.53 3.431 (3) 153
C7—H7⋯O1 0.93 2.37 2.745 (3) 104
C8—H8⋯O1ii 0.93 2.59 3.513 (3) 171
C13—H13⋯O1 0.93 2.41 2.752 (3) 101
C17—H17⋯O3 0.93 2.55 3.040 (3) 113
C20—H20B⋯O2 0.96 2.29 2.682 (4) 104

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This work was supported by the Grants for Scientific Research of BSKY (grant No. XJ200712) from Anhui Medical University.

supplementary crystallographic information

Comment

A [2 + 2] photocycloaddition (Paternò-Büchi reaction) of the 5–6 double bond of 1,3-dimethylthymine (DMT) with the carbonyl of benzophenone generates two regioisomers, head-to-head and head-to-tail oxetanes (Fig. 1). We have observed the temperature dependence of the regioselectivity (Hei et al., 2005). The crystal structure of the head-to-head oxetane has already been published (Prakash et al., 1997). In the present study, an X-ray crystallographic analysis of the head-to-tail oxetane has been undertaken to establish its structure and configuration.

The structure is similar to that observed in the head-to-head oxetane (Prakash et al., 1997). The bond lengths and angles in the title compound are in good agreement with expected values. The oxetane ring is folded and the dihedral angle between the C1—O1—C3 and C1—C2—C3 planes is 14.4 (2)° (Fig. 2). The dihedral angle between the two phenyl rings is 64.3 (2)° and the pyrimidine ring adopts a boat conformation. The crystal structure involves weak C—H···O hydrogen bonds.

Experimental

The title compound was prepared by first dissolving DMT (0.77 g, 5.0 mmol) and benzophenone (1.82 g, 10.0 mmol) in CH3CN (100 ml). The resulting solution was placed in a photochemical apparatus (Pyrex), purged with nitrogen, degassed for 30 min, and irradiated with a 300 W mercury high-pressure lamp for 10 h. The solvent was then rotary evaporated and the oxetane was purified by silica gel chromatography using a 4:1 petroleum ether/ethyl acetate solvent mixture. The fractions containing the h-t oxetane were combined, and the solvent removed by rotary evaporation. The purified oxetane was subsequently crystallized by dissolving the residue in 10 ml of ethyl acetate and adding n-hexane to the solution until it turned cloudy. Upon standing at room temperature, a colorless block appeared and was separated from the solvent by decanting.

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.98 Å (methine), 0.96 Å (methyl) and 0.93 Å (aromatic); Uiso(H) = 1.2 Ueq(C, O) or 1.5 Ueq(C) for the methyl group.

Figures

Fig. 1.

Fig. 1.

Formation of the two regioisomers of the Paternó-Büchi reaction.

Fig. 2.

Fig. 2.

Molecular structure of the title compound, with the atomic numbering scheme, and displacement ellipsoids drawn at the 30% probability level.

Crystal data

C20H20N2O3 F000 = 712
Mr = 336.38 Dx = 1.296 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71073 Å
a = 8.1341 (7) Å Cell parameters from 1952 reflections
b = 9.1004 (13) Å θ = 2.4–22.1º
c = 23.485 (2) Å µ = 0.09 mm1
β = 97.334 (2)º T = 298 (2) K
V = 1724.2 (3) Å3 Block, colorless
Z = 4 0.45 × 0.41 × 0.18 mm

Data collection

Bruker SMART diffractometer 3039 independent reflections
Radiation source: fine-focus sealed tube 1818 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.036
T = 298(2) K θmax = 25.0º
φ and ω scans θmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) h = −9→9
Tmin = 0.962, Tmax = 0.984 k = −10→10
8774 measured reflections l = −24→27

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044 H-atom parameters constrained
wR(F2) = 0.117   w = 1/[σ2(Fo2) + (0.038P)2 + 0.7238P] where P = (Fo2 + 2Fc2)/3
S = 1.01 (Δ/σ)max < 0.001
3039 reflections Δρmax = 0.20 e Å3
226 parameters Δρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 1.2692 (2) 0.5663 (2) 0.21196 (8) 0.0491 (5)
N2 1.2831 (2) 0.6885 (2) 0.12510 (8) 0.0492 (5)
O1 0.97763 (19) 0.60800 (17) 0.19685 (6) 0.0469 (4)
O2 1.4490 (2) 0.7527 (2) 0.20642 (8) 0.0750 (6)
O3 1.1732 (2) 0.5833 (2) 0.04218 (7) 0.0625 (5)
C1 0.9036 (3) 0.5849 (2) 0.13794 (8) 0.0379 (5)
C2 1.0673 (3) 0.4991 (2) 0.12589 (9) 0.0380 (5)
C3 1.1126 (3) 0.5076 (3) 0.19078 (9) 0.0427 (6)
H3 1.0949 0.4127 0.2088 0.051*
C4 1.3391 (3) 0.6743 (3) 0.18356 (11) 0.0503 (6)
C5 1.1782 (3) 0.5906 (3) 0.09400 (10) 0.0440 (6)
C6 0.7544 (3) 0.4834 (2) 0.13563 (9) 0.0398 (6)
C7 0.7166 (3) 0.4145 (3) 0.18451 (11) 0.0555 (7)
H7 0.7781 0.4358 0.2197 0.067*
C8 0.5890 (4) 0.3147 (3) 0.18183 (13) 0.0654 (8)
H8 0.5646 0.2695 0.2153 0.079*
C9 0.4977 (3) 0.2812 (3) 0.13056 (13) 0.0617 (8)
H9 0.4128 0.2124 0.1289 0.074*
C10 0.5325 (3) 0.3502 (3) 0.08148 (12) 0.0580 (7)
H10 0.4701 0.3289 0.0465 0.070*
C11 0.6592 (3) 0.4506 (3) 0.08398 (10) 0.0481 (6)
H11 0.6815 0.4971 0.0506 0.058*
C12 0.8626 (3) 0.7299 (2) 0.10882 (9) 0.0385 (6)
C13 0.8285 (3) 0.8494 (3) 0.14167 (11) 0.0505 (6)
H13 0.8336 0.8392 0.1813 0.061*
C14 0.7872 (4) 0.9835 (3) 0.11655 (14) 0.0673 (8)
H14 0.7645 1.0629 0.1392 0.081*
C15 0.7794 (4) 0.9999 (3) 0.05856 (14) 0.0727 (9)
H15 0.7523 1.0906 0.0417 0.087*
C16 0.8116 (4) 0.8830 (3) 0.02531 (12) 0.0666 (8)
H16 0.8061 0.8942 −0.0142 0.080*
C17 0.8520 (3) 0.7485 (3) 0.05001 (10) 0.0504 (6)
H17 0.8724 0.6693 0.0269 0.060*
C18 1.0451 (3) 0.3473 (3) 0.09951 (10) 0.0503 (6)
H18A 0.9886 0.3552 0.0612 0.075*
H18B 0.9809 0.2877 0.1222 0.075*
H18C 1.1517 0.3029 0.0985 0.075*
C19 1.3263 (4) 0.5493 (3) 0.27297 (11) 0.0783 (9)
H19A 1.4432 0.5683 0.2799 0.117*
H19B 1.3046 0.4508 0.2847 0.117*
H19C 1.2686 0.6175 0.2945 0.117*
C20 1.3705 (4) 0.7944 (3) 0.09317 (13) 0.0803 (10)
H20A 1.4539 0.7445 0.0751 0.121*
H20B 1.4218 0.8676 0.1190 0.121*
H20C 1.2931 0.8408 0.0644 0.121*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0490 (13) 0.0549 (13) 0.0392 (12) 0.0034 (11) −0.0110 (9) −0.0031 (10)
N2 0.0448 (12) 0.0524 (13) 0.0499 (13) −0.0048 (10) 0.0035 (10) −0.0005 (10)
O1 0.0509 (10) 0.0554 (11) 0.0329 (9) 0.0088 (8) −0.0009 (7) −0.0072 (7)
O2 0.0666 (13) 0.0819 (14) 0.0730 (13) −0.0225 (12) −0.0044 (11) −0.0256 (11)
O3 0.0560 (12) 0.0921 (14) 0.0402 (11) −0.0015 (10) 0.0092 (8) −0.0015 (9)
C1 0.0403 (14) 0.0433 (14) 0.0290 (12) 0.0050 (11) 0.0004 (10) −0.0041 (10)
C2 0.0387 (13) 0.0403 (13) 0.0336 (12) 0.0042 (11) −0.0008 (10) −0.0043 (10)
C3 0.0467 (15) 0.0395 (14) 0.0402 (14) 0.0043 (12) −0.0011 (11) −0.0030 (11)
C4 0.0450 (15) 0.0526 (17) 0.0519 (16) 0.0041 (13) 0.0012 (13) −0.0122 (13)
C5 0.0377 (14) 0.0522 (16) 0.0414 (15) 0.0069 (12) 0.0024 (11) −0.0021 (12)
C6 0.0379 (13) 0.0414 (14) 0.0405 (14) 0.0063 (11) 0.0067 (11) 0.0006 (11)
C7 0.0573 (17) 0.0665 (18) 0.0442 (15) −0.0029 (15) 0.0119 (12) 0.0020 (13)
C8 0.0656 (19) 0.070 (2) 0.065 (2) −0.0033 (16) 0.0253 (16) 0.0127 (15)
C9 0.0438 (16) 0.0573 (18) 0.085 (2) −0.0021 (14) 0.0134 (15) 0.0074 (16)
C10 0.0402 (15) 0.0623 (18) 0.0680 (19) −0.0026 (14) −0.0062 (13) 0.0037 (15)
C11 0.0447 (15) 0.0519 (16) 0.0467 (15) −0.0002 (13) 0.0015 (12) 0.0076 (12)
C12 0.0324 (13) 0.0391 (14) 0.0434 (14) 0.0010 (10) 0.0027 (10) −0.0035 (11)
C13 0.0477 (15) 0.0505 (16) 0.0512 (15) 0.0059 (13) −0.0016 (12) −0.0098 (13)
C14 0.073 (2) 0.0418 (16) 0.083 (2) 0.0119 (14) −0.0031 (16) −0.0150 (15)
C15 0.087 (2) 0.0434 (17) 0.083 (2) 0.0064 (15) −0.0078 (18) 0.0103 (16)
C16 0.089 (2) 0.0519 (18) 0.0564 (17) 0.0058 (16) −0.0001 (15) 0.0085 (14)
C17 0.0587 (17) 0.0438 (15) 0.0483 (16) 0.0068 (13) 0.0059 (12) 0.0010 (12)
C18 0.0462 (15) 0.0501 (15) 0.0524 (15) 0.0065 (12) −0.0026 (12) −0.0129 (12)
C19 0.082 (2) 0.095 (2) 0.0493 (17) −0.0024 (19) −0.0221 (15) 0.0001 (16)
C20 0.078 (2) 0.082 (2) 0.082 (2) −0.0240 (18) 0.0150 (18) 0.0105 (17)

Geometric parameters (Å, °)

N1—C4 1.353 (3) C9—H9 0.9300
N1—C3 1.412 (3) C10—C11 1.373 (3)
N1—C19 1.457 (3) C10—H10 0.9300
N2—C5 1.377 (3) C11—H11 0.9300
N2—C4 1.396 (3) C12—C13 1.381 (3)
N2—C20 1.460 (3) C12—C17 1.383 (3)
O1—C3 1.450 (3) C13—C14 1.379 (4)
O1—C1 1.452 (2) C13—H13 0.9300
O2—C4 1.214 (3) C14—C15 1.364 (4)
O3—C5 1.214 (3) C14—H14 0.9300
C1—C12 1.504 (3) C15—C16 1.365 (4)
C1—C6 1.521 (3) C15—H15 0.9300
C1—C2 1.600 (3) C16—C17 1.376 (3)
C2—C5 1.497 (3) C16—H16 0.9300
C2—C18 1.515 (3) C17—H17 0.9300
C2—C3 1.523 (3) C18—H18A 0.9600
C3—H3 0.9800 C18—H18B 0.9600
C6—C7 1.376 (3) C18—H18C 0.9600
C6—C11 1.386 (3) C19—H19A 0.9600
C7—C8 1.375 (4) C19—H19B 0.9600
C7—H7 0.9300 C19—H19C 0.9600
C8—C9 1.366 (4) C20—H20A 0.9600
C8—H8 0.9300 C20—H20B 0.9600
C9—C10 1.373 (4) C20—H20C 0.9600
C4—N1—C3 121.2 (2) C11—C10—C9 120.2 (3)
C4—N1—C19 117.4 (2) C11—C10—H10 119.9
C3—N1—C19 117.8 (2) C9—C10—H10 119.9
C5—N2—C4 124.3 (2) C10—C11—C6 120.9 (2)
C5—N2—C20 117.6 (2) C10—C11—H11 119.6
C4—N2—C20 116.6 (2) C6—C11—H11 119.6
C3—O1—C1 92.41 (14) C13—C12—C17 118.0 (2)
O1—C1—C12 110.28 (17) C13—C12—C1 119.0 (2)
O1—C1—C6 110.74 (17) C17—C12—C1 122.9 (2)
C12—C1—C6 112.78 (18) C14—C13—C12 120.9 (2)
O1—C1—C2 89.20 (14) C14—C13—H13 119.6
C12—C1—C2 119.28 (18) C12—C13—H13 119.6
C6—C1—C2 112.08 (17) C15—C14—C13 120.1 (3)
C5—C2—C18 110.54 (19) C15—C14—H14 119.9
C5—C2—C3 112.83 (19) C13—C14—H14 119.9
C18—C2—C3 117.16 (19) C14—C15—C16 119.9 (3)
C5—C2—C1 112.63 (18) C14—C15—H15 120.1
C18—C2—C1 117.30 (18) C16—C15—H15 120.1
C3—C2—C1 84.20 (15) C15—C16—C17 120.3 (3)
N1—C3—O1 112.77 (18) C15—C16—H16 119.8
N1—C3—C2 117.63 (19) C17—C16—H16 119.8
O1—C3—C2 92.34 (15) C16—C17—C12 120.7 (2)
N1—C3—H3 110.9 C16—C17—H17 119.6
O1—C3—H3 110.9 C12—C17—H17 119.6
C2—C3—H3 110.9 C2—C18—H18A 109.5
O2—C4—N1 122.7 (2) C2—C18—H18B 109.5
O2—C4—N2 120.6 (3) H18A—C18—H18B 109.5
N1—C4—N2 116.6 (2) C2—C18—H18C 109.5
O3—C5—N2 120.4 (2) H18A—C18—H18C 109.5
O3—C5—C2 121.7 (2) H18B—C18—H18C 109.5
N2—C5—C2 117.8 (2) N1—C19—H19A 109.5
C7—C6—C11 118.2 (2) N1—C19—H19B 109.5
C7—C6—C1 120.6 (2) H19A—C19—H19B 109.5
C11—C6—C1 121.07 (19) N1—C19—H19C 109.5
C8—C7—C6 120.7 (2) H19A—C19—H19C 109.5
C8—C7—H7 119.7 H19B—C19—H19C 109.5
C6—C7—H7 119.7 N2—C20—H20A 109.5
C9—C8—C7 120.7 (3) N2—C20—H20B 109.5
C9—C8—H8 119.7 H20A—C20—H20B 109.5
C7—C8—H8 119.7 N2—C20—H20C 109.5
C8—C9—C10 119.4 (3) H20A—C20—H20C 109.5
C8—C9—H9 120.3 H20B—C20—H20C 109.5
C10—C9—H9 120.3
C3—O1—C1—C12 −131.48 (18) C20—N2—C5—C2 −170.0 (2)
C3—O1—C1—C6 102.98 (19) C18—C2—C5—O3 37.6 (3)
C3—O1—C1—C2 −10.39 (16) C3—C2—C5—O3 170.9 (2)
O1—C1—C2—C5 −102.41 (19) C1—C2—C5—O3 −95.8 (3)
C12—C1—C2—C5 10.5 (3) C18—C2—C5—N2 −144.8 (2)
C6—C1—C2—C5 145.47 (19) C3—C2—C5—N2 −11.4 (3)
O1—C1—C2—C18 127.57 (19) C1—C2—C5—N2 81.9 (2)
C12—C1—C2—C18 −119.5 (2) O1—C1—C6—C7 −6.9 (3)
C6—C1—C2—C18 15.5 (3) C12—C1—C6—C7 −131.1 (2)
O1—C1—C2—C3 9.93 (15) C2—C1—C6—C7 91.0 (2)
C12—C1—C2—C3 122.9 (2) O1—C1—C6—C11 177.12 (19)
C6—C1—C2—C3 −102.19 (18) C12—C1—C6—C11 53.0 (3)
C4—N1—C3—O1 −72.4 (3) C2—C1—C6—C11 −85.0 (2)
C19—N1—C3—O1 85.8 (3) C11—C6—C7—C8 0.7 (4)
C4—N1—C3—C2 33.3 (3) C1—C6—C7—C8 −175.3 (2)
C19—N1—C3—C2 −168.6 (2) C6—C7—C8—C9 0.3 (4)
C1—O1—C3—N1 132.30 (19) C7—C8—C9—C10 −1.1 (4)
C1—O1—C3—C2 10.93 (17) C8—C9—C10—C11 0.7 (4)
C5—C2—C3—N1 −15.1 (3) C9—C10—C11—C6 0.4 (4)
C18—C2—C3—N1 115.0 (2) C7—C6—C11—C10 −1.1 (3)
C1—C2—C3—N1 −127.2 (2) C1—C6—C11—C10 174.9 (2)
C5—C2—C3—O1 102.19 (19) O1—C1—C12—C13 −27.7 (3)
C18—C2—C3—O1 −127.7 (2) C6—C1—C12—C13 96.7 (2)
C1—C2—C3—O1 −9.95 (15) C2—C1—C12—C13 −128.7 (2)
C3—N1—C4—O2 160.5 (2) O1—C1—C12—C17 154.5 (2)
C19—N1—C4—O2 2.3 (4) C6—C1—C12—C17 −81.1 (3)
C3—N1—C4—N2 −22.0 (3) C2—C1—C12—C17 53.5 (3)
C19—N1—C4—N2 179.8 (2) C17—C12—C13—C14 −0.8 (4)
C5—N2—C4—O2 169.6 (2) C1—C12—C13—C14 −178.7 (2)
C20—N2—C4—O2 3.8 (3) C12—C13—C14—C15 0.0 (4)
C5—N2—C4—N1 −7.9 (3) C13—C14—C15—C16 0.5 (5)
C20—N2—C4—N1 −173.7 (2) C14—C15—C16—C17 −0.1 (5)
C4—N2—C5—O3 −157.9 (2) C15—C16—C17—C12 −0.7 (4)
C20—N2—C5—O3 7.7 (3) C13—C12—C17—C16 1.2 (4)
C4—N2—C5—C2 24.4 (3) C1—C12—C17—C16 179.0 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C3—H3···O2i 0.98 2.53 3.431 (3) 153
C7—H7···O1 0.93 2.37 2.745 (3) 104
C8—H8···O1ii 0.93 2.59 3.513 (3) 171
C13—H13···O1 0.93 2.41 2.752 (3) 101
C17—H17···O3 0.93 2.55 3.040 (3) 113
C20—H20B···O2 0.96 2.29 2.682 (4) 104

Symmetry codes: (i) −x+5/2, y−1/2, −z+1/2; (ii) −x+3/2, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: WN2239).

References

  1. Hei, X. M., Song, Q. H., Tang, W. J., Wang, H. B. & Guo, Q. X. (2005). J. Org. Chem.70, 2522–2527. [DOI] [PubMed]
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  5. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808006557/wn2239sup1.cif

e-64-0o796-sup1.cif (20.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006557/wn2239Isup2.hkl

e-64-0o796-Isup2.hkl (149.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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