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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Apr 10;64(Pt 5):o833. doi: 10.1107/S1600536808009513

2-Methyl-N-[(3-methyl-2-pyrid­yl)carbamothio­yl]benzamide

B M Yamin a, S Yousuf b,*, M S M Yusof c, R H Jusoh c
PMCID: PMC2961265  PMID: 21202322

Abstract

In the title compound, C15H15N3OS, the thio­urea group is stabilized by an intra­molecular hydrogen bond between the carbonyl O atom and the thio­amide group. A C—H⋯N intramolecular hydrogen bond is also present. Mol­ecules are linked by inter­molecular N—H⋯O and C—H⋯S hydrogen bonds.

Related literature

For the crystal structure of N-(3-iodo­phen­yl)-N′-(2-methyl­benzo­yl)thio­urea, see: Yusof et al. (2007). For bond-length data, see: Allen et al. (1987).graphic file with name e-64-0o833-scheme1.jpg

Experimental

Crystal data

  • C15H15N3OS

  • M r = 285.36

  • Monoclinic, Inline graphic

  • a = 7.955 (3) Å

  • b = 7.811 (3) Å

  • c = 23.414 (8) Å

  • β = 90.827 (6)°

  • V = 1454.6 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 298 (2) K

  • 0.49 × 0.46 × 0.17 mm

Data collection

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.899, T max = 0.963

  • 7524 measured reflections

  • 2710 independent reflections

  • 2099 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.112

  • S = 1.02

  • 2710 reflections

  • 191 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.13 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808009513/sg2229sup1.cif

e-64-0o833-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009513/sg2229Isup2.hkl

e-64-0o833-Isup2.hkl (133.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O1 0.86 (2) 2.04 (2) 2.697 (2) 132.2 (18)
C15—H15A⋯N2 0.96 2.56 2.961 105
N2—H2⋯O1i 0.86 (2) 2.30 (2) 3.021 (2) 142 (2)
C13—H13⋯S1ii 0.93 2.85 3.700 154

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Ministry of Higher Education of Malaysia for Fundamental Research Grants UKM-ST-01-FRGS-0003-2006 and UMT-FRGS-59001, and Universiti Kebangsaan Malaysia and HEJ Research Institute of Chemistry, University of Karachi, for research facilities.

supplementary crystallographic information

Comment

The title compound, (I), is analogous to N-(3-iodophenyl)-N'-(2-methylbenzoyl) thiourea (II), (Yusof et al., 2007) except that the iodophenyl group is replaced by the 3-methylpyridine group (Fig.1). The bond lengths and angles are in normal range (Allen et al., 1987). The central thiourea moiety, S1/N1/N2/C9, pyridine, N3/(C10—C14), and benzene,(C1—C6) rings are each planar with maximum deviation of 0.033 (2)Å for N2 atom from the least square plane. The central thiourea moiety makes dihedral angle with the pyridine and benzene rings of 64.58 (8) and 62.03 (8)° respectively. The dihedral angle between the pyridine and benzene rings (4.03 (10)°) is smaller compared to that in (II) of 31.88 (9)°. The molecule maintains the trans-cis geometry of the thiourea moiety which is stabilized by the intrahydrogen bond between the carbonyl oxygen atom O1 and the thioamide hydrogen atom, H15A. In the crystal structure, the molecules are linked by the N2—H2···O1 and C13—H13···S1 intermolecular hydrogen bonds (symmtery codes as in Table 2).

Experimental

The mixture of 2-methylbenzoyl chloride (9.720 g, 0.025mole) with the equimolar amount of ammonium thiocyanate (1.903 g, 0.025 mol) and 2-amino-3-methyl pyridine,(2.703 g, 0.025 mol) in 40 ml dry acetone was refluxed with stirring for 4 h. The solution was filtered and left to evaporate at room temperature. The colourless crystals obtained after a few days, was found suitable for X-ray investigations. The yield was 85% and the melting point is 412.3–413.8 K.

Refinement

H atoms on the C of methyl, phenyl and pyridine were positioned geomatrically with C—H=0.96 Å and 0.93 Å respectively and constrained to ride on their parent atoms with Uiso(H)= 1.2Ueq(CH) and 1.5Ueq(CH3). The hydrogen atoms attached to the amino nitrogen atoms were located from the difference Fourier map and refined isotropically.

Figures

Fig. 1.

Fig. 1.

The molecular Structure of (1) with displacement ellipsoids drawn at 50% probability level.The dashed lines indicates the intramolecular hydrogen bonds.

Fig. 2.

Fig. 2.

A packing diagram of (1). Hydrogen bonds are shown by dashed lines.

Crystal data

C15H15N3OS F000 = 600
Mr = 285.36 Dx = 1.303 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 2292 reflections
a = 7.955 (3) Å θ = 1.7–25.5º
b = 7.811 (3) Å µ = 0.22 mm1
c = 23.414 (8) Å T = 298 (2) K
β = 90.827 (6)º Block, colourless
V = 1454.6 (9) Å3 0.49 × 0.46 × 0.17 mm
Z = 4

Data collection

Bruker SMART APEX CCD area-detector diffractometer 2710 independent reflections
Radiation source: fine-focus sealed tube 2099 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.019
Detector resolution: 83.66 pixels mm-1 θmax = 25.5º
T = 298(2) K θmin = 1.7º
ω scans h = −9→9
Absorption correction: multi-scan(SADABS; Bruker, 2000) k = −9→9
Tmin = 0.899, Tmax = 0.963 l = −16→28
7524 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.112   w = 1/[σ2(Fo2) + (0.0591P)2 + 0.3029P] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max < 0.001
2710 reflections Δρmax = 0.24 e Å3
191 parameters Δρmin = −0.13 e Å3
1 restraint Extinction correction: none
Primary atom site location: structure-invariant direct methods

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.34243 (7) 0.20705 (8) 0.17685 (2) 0.0662 (2)
O1 0.40058 (17) 0.34898 (19) −0.00872 (5) 0.0599 (4)
N1 0.26335 (19) 0.2529 (2) 0.06915 (6) 0.0485 (4)
H1 0.1847 (19) 0.183 (2) 0.0784 (8) 0.056 (6)*
N2 0.49690 (18) 0.4025 (2) 0.10075 (6) 0.0460 (4)
H2 0.513 (2) 0.429 (3) 0.0656 (9) 0.057 (6)*
N3 0.77881 (19) 0.3995 (2) 0.12320 (7) 0.0579 (4)
C1 0.1548 (2) 0.1298 (2) −0.07366 (8) 0.0497 (5)
C2 0.0123 (3) 0.0935 (3) −0.10668 (9) 0.0641 (6)
H2A 0.0238 0.0305 −0.1401 0.077*
C3 −0.1439 (3) 0.1477 (3) −0.09150 (10) 0.0707 (7)
H3 −0.2358 0.1239 −0.1152 0.085*
C4 −0.1669 (3) 0.2364 (3) −0.04197 (11) 0.0675 (6)
H4 −0.2737 0.2720 −0.0316 0.081*
C5 −0.0286 (2) 0.2727 (3) −0.00736 (9) 0.0537 (5)
H5 −0.0430 0.3303 0.0270 0.064*
C6 0.1310 (2) 0.2234 (2) −0.02376 (7) 0.0434 (4)
C7 0.3230 (3) 0.0627 (3) −0.09092 (10) 0.0759 (7)
H7A 0.3091 −0.0141 −0.1226 0.114*
H7B 0.3742 0.0028 −0.0594 0.114*
H7C 0.3936 0.1565 −0.1018 0.114*
C8 0.2781 (2) 0.2805 (2) 0.01149 (7) 0.0433 (4)
C9 0.3749 (2) 0.2940 (2) 0.11353 (7) 0.0457 (4)
C10 0.6291 (2) 0.4528 (2) 0.13916 (7) 0.0437 (4)
C11 0.6000 (3) 0.5570 (3) 0.18580 (8) 0.0554 (5)
C12 0.7424 (3) 0.5988 (3) 0.21814 (9) 0.0688 (6)
H12 0.7315 0.6667 0.2505 0.083*
C13 0.8968 (3) 0.5421 (3) 0.20313 (10) 0.0745 (7)
H13 0.9914 0.5683 0.2252 0.089*
C14 0.9096 (3) 0.4468 (3) 0.15529 (10) 0.0732 (7)
H14 1.0162 0.4123 0.1442 0.088*
C15 0.4302 (3) 0.6260 (4) 0.20004 (11) 0.0852 (8)
H15A 0.3581 0.6201 0.1669 0.128*
H15B 0.4408 0.7430 0.2121 0.128*
H15C 0.3829 0.5593 0.2303 0.128*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0669 (4) 0.0892 (4) 0.0423 (3) −0.0180 (3) −0.0071 (2) 0.0199 (3)
O1 0.0565 (8) 0.0822 (10) 0.0411 (7) −0.0295 (7) 0.0001 (6) 0.0024 (7)
N1 0.0422 (9) 0.0642 (10) 0.0390 (8) −0.0158 (7) −0.0032 (6) 0.0087 (7)
N2 0.0425 (8) 0.0628 (10) 0.0325 (8) −0.0091 (7) −0.0020 (6) 0.0037 (7)
N3 0.0422 (9) 0.0730 (11) 0.0585 (10) −0.0011 (8) −0.0012 (7) −0.0153 (8)
C1 0.0598 (12) 0.0452 (10) 0.0441 (10) −0.0082 (9) −0.0028 (8) 0.0020 (8)
C2 0.0840 (16) 0.0569 (13) 0.0508 (11) −0.0154 (12) −0.0169 (11) −0.0021 (10)
C3 0.0697 (15) 0.0612 (13) 0.0801 (16) −0.0157 (11) −0.0364 (13) 0.0138 (12)
C4 0.0452 (12) 0.0651 (14) 0.0919 (17) −0.0024 (10) −0.0117 (11) 0.0112 (13)
C5 0.0485 (12) 0.0559 (12) 0.0567 (12) −0.0043 (9) −0.0023 (9) 0.0011 (9)
C6 0.0455 (10) 0.0432 (9) 0.0413 (9) −0.0070 (8) −0.0044 (7) 0.0061 (8)
C7 0.0810 (16) 0.0757 (16) 0.0713 (15) 0.0002 (13) 0.0119 (12) −0.0179 (12)
C8 0.0434 (10) 0.0456 (10) 0.0408 (9) −0.0068 (8) −0.0005 (7) 0.0018 (8)
C9 0.0387 (10) 0.0565 (11) 0.0418 (10) −0.0005 (8) −0.0014 (7) 0.0026 (8)
C10 0.0435 (10) 0.0508 (10) 0.0367 (9) −0.0025 (8) −0.0028 (7) 0.0003 (8)
C11 0.0634 (12) 0.0592 (12) 0.0435 (10) 0.0039 (10) 0.0008 (9) −0.0035 (9)
C12 0.0903 (17) 0.0698 (15) 0.0459 (11) −0.0074 (13) −0.0106 (11) −0.0148 (10)
C13 0.0637 (15) 0.0915 (18) 0.0675 (14) −0.0146 (13) −0.0233 (11) −0.0064 (13)
C14 0.0435 (12) 0.0973 (18) 0.0785 (15) −0.0010 (11) −0.0096 (10) −0.0162 (13)
C15 0.0838 (17) 0.0948 (18) 0.0774 (16) 0.0215 (14) 0.0110 (13) −0.0214 (14)

Geometric parameters (Å, °)

S1—C9 1.6545 (18) C4—H4 0.9300
O1—C8 1.214 (2) C5—C6 1.386 (3)
N1—C8 1.374 (2) C5—H5 0.9300
N1—C9 1.394 (2) C6—C8 1.490 (2)
N1—H1 0.860 (9) C7—H7A 0.9600
N2—C9 1.326 (2) C7—H7B 0.9600
N2—C10 1.429 (2) C7—H7C 0.9600
N2—H2 0.86 (2) C10—C11 1.384 (3)
N3—C10 1.321 (2) C11—C12 1.392 (3)
N3—C14 1.327 (3) C11—C15 1.497 (3)
C1—C2 1.392 (3) C12—C13 1.357 (3)
C1—C6 1.394 (3) C12—H12 0.9300
C1—C7 1.498 (3) C13—C14 1.350 (3)
C2—C3 1.364 (3) C13—H13 0.9300
C2—H2A 0.9300 C14—H14 0.9300
C3—C4 1.366 (3) C15—H15A 0.9600
C3—H3 0.9300 C15—H15B 0.9600
C4—C5 1.386 (3) C15—H15C 0.9600
C8—N1—C9 129.35 (15) H7A—C7—H7C 109.5
C8—N1—H1 114.8 (13) H7B—C7—H7C 109.5
C9—N1—H1 114.6 (13) O1—C8—N1 122.17 (16)
C9—N2—C10 124.63 (15) O1—C8—C6 122.97 (16)
C9—N2—H2 119.5 (13) N1—C8—C6 114.85 (14)
C10—N2—H2 114.5 (13) N2—C9—N1 116.05 (15)
C10—N3—C14 117.05 (18) N2—C9—S1 126.06 (14)
C2—C1—C6 116.94 (19) N1—C9—S1 117.88 (13)
C2—C1—C7 120.18 (19) N3—C10—C11 124.77 (17)
C6—C1—C7 122.84 (18) N3—C10—N2 113.16 (15)
C3—C2—C1 122.0 (2) C11—C10—N2 121.92 (16)
C3—C2—H2A 119.0 C10—C11—C12 115.06 (19)
C1—C2—H2A 119.0 C10—C11—C15 123.32 (19)
C2—C3—C4 120.8 (2) C12—C11—C15 121.6 (2)
C2—C3—H3 119.6 C13—C12—C11 121.0 (2)
C4—C3—H3 119.6 C13—C12—H12 119.5
C3—C4—C5 119.1 (2) C11—C12—H12 119.5
C3—C4—H4 120.5 C14—C13—C12 118.4 (2)
C5—C4—H4 120.5 C14—C13—H13 120.8
C4—C5—C6 120.2 (2) C12—C13—H13 120.8
C4—C5—H5 119.9 N3—C14—C13 123.7 (2)
C6—C5—H5 119.9 N3—C14—H14 118.1
C5—C6—C1 120.92 (17) C13—C14—H14 118.1
C5—C6—C8 118.59 (16) C11—C15—H15A 109.5
C1—C6—C8 120.42 (16) C11—C15—H15B 109.5
C1—C7—H7A 109.5 H15A—C15—H15B 109.5
C1—C7—H7B 109.5 C11—C15—H15C 109.5
H7A—C7—H7B 109.5 H15A—C15—H15C 109.5
C1—C7—H7C 109.5 H15B—C15—H15C 109.5
C6—C1—C2—C3 0.5 (3) C10—N2—C9—N1 −176.19 (16)
C7—C1—C2—C3 177.9 (2) C10—N2—C9—S1 4.8 (3)
C1—C2—C3—C4 −1.8 (3) C8—N1—C9—N2 14.3 (3)
C2—C3—C4—C5 0.7 (3) C8—N1—C9—S1 −166.69 (16)
C3—C4—C5—C6 1.8 (3) C14—N3—C10—C11 1.6 (3)
C4—C5—C6—C1 −3.1 (3) C14—N3—C10—N2 177.29 (19)
C4—C5—C6—C8 173.72 (17) C9—N2—C10—N3 113.7 (2)
C2—C1—C6—C5 2.0 (3) C9—N2—C10—C11 −70.4 (3)
C7—C1—C6—C5 −175.40 (18) N3—C10—C11—C12 −2.8 (3)
C2—C1—C6—C8 −174.81 (17) N2—C10—C11—C12 −178.13 (18)
C7—C1—C6—C8 7.8 (3) N3—C10—C11—C15 175.1 (2)
C9—N1—C8—O1 0.3 (3) N2—C10—C11—C15 −0.2 (3)
C9—N1—C8—C6 −178.45 (18) C10—C11—C12—C13 1.2 (3)
C5—C6—C8—O1 −129.5 (2) C15—C11—C12—C13 −176.7 (2)
C1—C6—C8—O1 47.3 (3) C11—C12—C13—C14 1.3 (4)
C5—C6—C8—N1 49.2 (2) C10—N3—C14—C13 1.3 (4)
C1—C6—C8—N1 −133.98 (18) C12—C13—C14—N3 −2.8 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2···O1 0.86 (2) 2.04 (2) 2.697 (2) 132.2 (18)
C15—H15A···N2 0.96 2.56 2.961 105
N2—H2···O1i 0.86 (2) 2.30 (2) 3.021 (2) 142 (2)
C13—H13···S1ii 0.93 2.85 3.700 154

Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+3/2, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SG2229).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bruker (2000). SADABS, SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Nardelli, M. (1995). J. Appl. Cryst.28, 659.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
  6. Yusof, M. S. M., Ahmad Mushtari, N. & Yamin, B. M. (2007). Acta Cryst. E63, o4709.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808009513/sg2229sup1.cif

e-64-0o833-sup1.cif (18.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009513/sg2229Isup2.hkl

e-64-0o833-Isup2.hkl (133.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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