Abstract
The title compound, C9H10N4S·0.095H2O, consists of discrete 4-ethyl-3-(3-pyridyl)-1H-1,2,4-triazole-5(4H)-thione molecules and a disordered molecule of water of hydration with partial occupancy, lying on a twofold rotation axis. The dihedral angle between the pyridine and triazole rings is 41.73 (8)°. In the crystal structure, molecules are hydrogen bonded via triazole NH groups and pyridyl N atoms, forming chains parallel to the a axis.
Related literature
For related literature, see: Ahmad et al. (2001 ▶); Chai et al. (2003 ▶); Dege et al. (2004 ▶, 2005 ▶)); Demir et al. (2006 ▶); Dobosz et al. (2003 ▶); Hashimoto et al. (1990 ▶); Kanazawa et al. (1988 ▶); Mazur et al. (2006 ▶).
Experimental
Crystal data
C9H10N4S·0.095H2O
M r = 207.96
Monoclinic,
a = 14.076 (5) Å
b = 8.877 (5) Å
c = 16.216 (8) Å
β = 93.25 (3)°
V = 2023.0 (17) Å3
Z = 8
Mo Kα radiation
μ = 0.29 mm−1
T = 173 (2) K
0.18 × 0.16 × 0.10 mm
Data collection
Nonius KappaCCD diffractometer
Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.950, T max = 0.972
3392 measured reflections
2297 independent reflections
1616 reflections with I > 2σ(I)
R int = 0.030
Refinement
R[F 2 > 2σ(F 2)] = 0.042
wR(F 2) = 0.107
S = 1.05
2297 reflections
137 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.24 e Å−3
Δρmin = −0.25 e Å−3
Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011744/lh2615sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011744/lh2615Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯N4i | 0.88 (2) | 1.94 (2) | 2.792 (3) | 162 (2) |
Symmetry code: (i)
.
supplementary crystallographic information
Comment
Disubstituted 1,2,4-triazoles and their derivatives are very important five membered heterocyclic compounds for their biological and pharmacological activities, such as antitumoral, inhibition of cholesterol, fungicidal, herbicidal, anticonvulsant (Kanazawa et al., 1988; Chai et al., 2003; Hashimoto et al., 1990). Herein, we report the synthesis and crystal structure of the title compound, (I).
The structure of (I) is composed of independent molecules of 4-ethyl-2,4-dihydro-5-(3-pyridyl)-3H-1,2,4-triazole-3-thione (Fig. 1) and a disordered water of hydration with partial occupancy lying on a two-fold rotation axis. The bond distances and bond angles in (I) agree well with the corresponding bond distances and angles reported in some compounds closely related to (I) (e.g., Dege et al., 2004, 2005; Mazur et al., 2006; Dobosz et al., 2003; Demir, et al., 2006). The mean-planes formed by the pyridyl and triazole rings in (I) lie at 41.73 (8)° with respect to each other while the mean-plane of the ethyl group is inclined with the triazole ring at 80.39 (13)°.
The water of hydration is surrounded by four molecules of (I) with S1···O1 and N1···O1 separation of 3.074 (4) and 3.382 (9) Å, respectively (Fig. 2). The molecules of (I) are hydrogen bonded via N2—H2···N4 forming chains lying parallel to the a axis (details of hydrogen bonding geometry have been given in Table 1). The shortest distance between the centroids of pyridyl and triazole rings from two different molecules lying about inversion centers is 4.350 (3) Å.
Experimental
The title compound was prepared from the corresponding thiosemicarbazide by following the reported procedure (Ahmad et al., 2001). 4-Ethyl-1-(2-pyridoyl)thiosemicarbazide (12 mmol) was dissolved in an aqueous 4 N sodium hydroxide solution (65 ml). The solution was heated to reflux for 11.5 h, cooled and filtered. The filtrate was acidified to pH of 4–5, with 4 N hydrochloric acid. The solid product was filtered off, washed with water and recrystallized from aqueous ethanol (60%). Crystals of (I) were grown by slow evaporation of the ethanol over 15 days at room temperature (yield 72%).
Refinement
Though all the H atoms could be distinguished in the difference Fourier map the H-atoms bonded to C-atoms were included at geometrically idealized positions and refined in riding-model approximation with the following constraints: pyridyl, methyl and methylene C—H distances were set to 0.95, 0.98 and 0.99 Å, respectively; in all these instances Uiso(H) = 1.2 Ueq(C). H-atom bonded to N2 was taken from the difference map and was allowed to refine with Uiso = 1.2 times Ueq of N2. Towards the end of the refinement, a difference Fourier map revealed a peak that was included in the refinement as an O-atom the site occupancy factor of which refined to 0.095; its s.o.f. was fixed at that value during the final rounds of calculations. The H-atoms bonded to the O atom of the water molecule could not be located and were not included in the refinement but are included in the molecular formula. The atmospheric moisture was assumed to be the source of this partially occupied water of hydration. The final difference map was free of any chemically significant features.
Figures
Fig. 1.
ORTEP-3 (Farrugia, 1997) drawing of (I) with displacement ellipsoids plotted at 50% probability level.
Fig. 2.
Unit cell packing of (I) showing hydrogen bonds with dashed lines; H-atoms not involved in H-bonds have been omitted.
Crystal data
| C9H10N4S·0.095H2O | F000 = 872 |
| Mr = 207.96 | Dx = 1.366 Mg m−3 |
| Monoclinic, C2/c | Melting point = 440–441 K |
| Hall symbol: -C 2yc | Mo Kα radiation λ = 0.71073 Å |
| a = 14.076 (5) Å | Cell parameters from 3392 reflections |
| b = 8.877 (5) Å | θ = 3.6–27.4º |
| c = 16.216 (8) Å | µ = 0.29 mm−1 |
| β = 93.25 (3)º | T = 173 (2) K |
| V = 2023.0 (17) Å3 | Block, colorless |
| Z = 8 | 0.18 × 0.16 × 0.10 mm |
Data collection
| Nonius KappaCCD diffractometer | 2297 independent reflections |
| Radiation source: fine-focus sealed tube | 1616 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.030 |
| T = 173(2) K | θmax = 27.4º |
| ω and φ scans | θmin = 3.6º |
| Absorption correction: Multi-scan(SORTAV; Blessing, 1997) | h = −17→18 |
| Tmin = 0.950, Tmax = 0.972 | k = −11→9 |
| 3392 measured reflections | l = −20→20 |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.042 | w = 1/[σ2(Fo2) + (0.0405P)2 + 1.636P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.107 | (Δ/σ)max < 0.001 |
| S = 1.05 | Δρmax = 0.24 e Å−3 |
| 2297 reflections | Δρmin = −0.25 e Å−3 |
| 137 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0038 (9) |
| Secondary atom site location: difference Fourier map |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| S1 | −0.12974 (4) | 0.05644 (7) | −0.11164 (3) | 0.0415 (2) | |
| O1 | 0.0000 | −0.0319 (16) | −0.2500 | 0.070 (4) | 0.19 |
| N1 | −0.07296 (10) | 0.26787 (18) | 0.09536 (9) | 0.0256 (4) | |
| N2 | −0.13013 (11) | 0.19176 (19) | 0.03795 (10) | 0.0276 (4) | |
| H2 | −0.1854 (16) | 0.158 (3) | 0.0530 (12) | 0.033* | |
| N3 | 0.00251 (10) | 0.22103 (18) | −0.01818 (9) | 0.0228 (4) | |
| N4 | 0.21945 (11) | 0.53359 (19) | 0.10227 (10) | 0.0290 (4) | |
| C1 | 0.00713 (12) | 0.2838 (2) | 0.05951 (10) | 0.0217 (4) | |
| C2 | −0.08639 (13) | 0.1576 (2) | −0.03071 (12) | 0.0267 (4) | |
| C3 | 0.14695 (12) | 0.4604 (2) | 0.06268 (11) | 0.0246 (4) | |
| H3 | 0.1343 | 0.4794 | 0.0055 | 0.029* | |
| C4 | 0.08963 (12) | 0.3582 (2) | 0.10142 (11) | 0.0220 (4) | |
| C5 | 0.10899 (13) | 0.3310 (2) | 0.18541 (11) | 0.0263 (4) | |
| H5 | 0.0714 | 0.2616 | 0.2140 | 0.032* | |
| C6 | 0.18343 (14) | 0.4061 (2) | 0.22654 (12) | 0.0313 (5) | |
| H6 | 0.1977 | 0.3897 | 0.2838 | 0.038* | |
| C7 | 0.23642 (13) | 0.5050 (2) | 0.18282 (12) | 0.0313 (5) | |
| H7 | 0.2878 | 0.5559 | 0.2113 | 0.038* | |
| C8 | 0.07912 (14) | 0.1998 (2) | −0.07478 (12) | 0.0300 (5) | |
| H8A | 0.0756 | 0.0962 | −0.0973 | 0.036* | |
| H8B | 0.1412 | 0.2110 | −0.0436 | 0.036* | |
| C9 | 0.07367 (17) | 0.3113 (3) | −0.14570 (13) | 0.0406 (6) | |
| H9A | 0.1216 | 0.2857 | −0.1849 | 0.049* | |
| H9B | 0.0856 | 0.4132 | −0.1243 | 0.049* | |
| H9C | 0.0102 | 0.3072 | −0.1738 | 0.049* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0476 (4) | 0.0346 (4) | 0.0398 (3) | −0.0034 (3) | −0.0202 (3) | −0.0060 (2) |
| O1 | 0.107 (12) | 0.043 (9) | 0.063 (9) | 0.000 | 0.034 (9) | 0.000 |
| N1 | 0.0194 (8) | 0.0271 (10) | 0.0300 (8) | −0.0060 (7) | −0.0022 (6) | 0.0005 (7) |
| N2 | 0.0201 (8) | 0.0283 (10) | 0.0339 (9) | −0.0080 (7) | −0.0032 (7) | 0.0017 (7) |
| N3 | 0.0228 (8) | 0.0221 (9) | 0.0232 (8) | −0.0008 (7) | −0.0026 (6) | 0.0016 (6) |
| N4 | 0.0220 (8) | 0.0282 (10) | 0.0367 (9) | −0.0042 (7) | 0.0002 (7) | 0.0000 (7) |
| C1 | 0.0209 (9) | 0.0215 (10) | 0.0225 (9) | −0.0007 (8) | −0.0008 (7) | 0.0031 (7) |
| C2 | 0.0256 (10) | 0.0221 (11) | 0.0315 (10) | −0.0015 (8) | −0.0076 (8) | 0.0044 (8) |
| C3 | 0.0199 (9) | 0.0269 (11) | 0.0267 (9) | −0.0012 (8) | −0.0001 (7) | 0.0024 (8) |
| C4 | 0.0180 (9) | 0.0212 (10) | 0.0267 (9) | −0.0001 (7) | 0.0005 (7) | −0.0007 (8) |
| C5 | 0.0234 (10) | 0.0288 (11) | 0.0268 (9) | −0.0024 (8) | 0.0027 (7) | −0.0005 (8) |
| C6 | 0.0298 (10) | 0.0399 (13) | 0.0237 (9) | −0.0020 (9) | −0.0034 (8) | −0.0027 (9) |
| C7 | 0.0226 (10) | 0.0333 (12) | 0.0373 (11) | −0.0047 (9) | −0.0052 (8) | −0.0081 (9) |
| C8 | 0.0316 (10) | 0.0289 (12) | 0.0299 (10) | 0.0029 (9) | 0.0044 (8) | −0.0006 (9) |
| C9 | 0.0540 (14) | 0.0397 (14) | 0.0289 (11) | 0.0010 (11) | 0.0096 (10) | 0.0024 (10) |
Geometric parameters (Å, °)
| S1—C2 | 1.676 (2) | C3—C4 | 1.388 (3) |
| S1—O1 | 3.074 (4) | C3—H3 | 0.9500 |
| O1—S1i | 3.074 (4) | C4—C5 | 1.395 (3) |
| O1—N1ii | 3.382 (9) | C5—C6 | 1.381 (3) |
| N1—C1 | 1.305 (2) | C5—H5 | 0.9500 |
| N1—N2 | 1.373 (2) | C6—C7 | 1.375 (3) |
| N2—C2 | 1.337 (3) | C6—H6 | 0.9500 |
| N2—H2 | 0.88 (2) | C7—H7 | 0.9500 |
| N3—C1 | 1.376 (2) | C8—C9 | 1.516 (3) |
| N3—C2 | 1.377 (2) | C8—H8A | 0.9900 |
| N3—C8 | 1.467 (2) | C8—H8B | 0.9900 |
| N4—C7 | 1.339 (3) | C9—H9A | 0.9800 |
| N4—C3 | 1.342 (2) | C9—H9B | 0.9800 |
| C1—C4 | 1.469 (2) | C9—H9C | 0.9800 |
| C2—S1—O1 | 120.21 (15) | C5—C4—C1 | 118.66 (16) |
| S1—O1—S1i | 150.4 (5) | C6—C5—C4 | 119.26 (18) |
| S1—O1—N1ii | 77.57 (10) | C6—C5—H5 | 120.4 |
| S1i—O1—N1ii | 122.08 (18) | C4—C5—H5 | 120.4 |
| C1—N1—N2 | 103.82 (16) | C7—C6—C5 | 118.57 (18) |
| C2—N2—N1 | 113.35 (16) | C7—C6—H6 | 120.7 |
| C2—N2—H2 | 127.4 (14) | C5—C6—H6 | 120.7 |
| N1—N2—H2 | 118.2 (14) | N4—C7—C6 | 123.51 (17) |
| C1—N3—C2 | 107.22 (15) | N4—C7—H7 | 118.2 |
| C1—N3—C8 | 128.79 (15) | C6—C7—H7 | 118.2 |
| C2—N3—C8 | 123.33 (16) | N3—C8—C9 | 112.54 (17) |
| C7—N4—C3 | 117.62 (17) | N3—C8—H8A | 109.1 |
| N1—C1—N3 | 111.53 (16) | C9—C8—H8A | 109.1 |
| N1—C1—C4 | 121.52 (16) | N3—C8—H8B | 109.1 |
| N3—C1—C4 | 126.94 (16) | C9—C8—H8B | 109.1 |
| N2—C2—N3 | 104.00 (16) | H8A—C8—H8B | 107.8 |
| N2—C2—S1 | 127.52 (15) | C8—C9—H9A | 109.5 |
| N3—C2—S1 | 128.46 (16) | C8—C9—H9B | 109.5 |
| N4—C3—C4 | 123.08 (17) | H9A—C9—H9B | 109.5 |
| N4—C3—H3 | 118.5 | C8—C9—H9C | 109.5 |
| C4—C3—H3 | 118.5 | H9A—C9—H9C | 109.5 |
| C3—C4—C5 | 117.95 (16) | H9B—C9—H9C | 109.5 |
| C3—C4—C1 | 123.31 (16) | ||
| C2—S1—O1—S1i | −60.83 (15) | O1—S1—C2—N3 | 5.5 (3) |
| C2—S1—O1—N1ii | 74.7 (3) | C7—N4—C3—C4 | 0.2 (3) |
| C1—N1—N2—C2 | 1.6 (2) | N4—C3—C4—C5 | −0.1 (3) |
| N2—N1—C1—N3 | 0.1 (2) | N4—C3—C4—C1 | 176.65 (18) |
| N2—N1—C1—C4 | −178.76 (16) | N1—C1—C4—C3 | −137.4 (2) |
| C2—N3—C1—N1 | −1.8 (2) | N3—C1—C4—C3 | 43.9 (3) |
| C8—N3—C1—N1 | −172.57 (17) | N1—C1—C4—C5 | 39.3 (3) |
| C2—N3—C1—C4 | 177.06 (18) | N3—C1—C4—C5 | −139.4 (2) |
| C8—N3—C1—C4 | 6.3 (3) | C3—C4—C5—C6 | 0.2 (3) |
| N1—N2—C2—N3 | −2.7 (2) | C1—C4—C5—C6 | −176.73 (18) |
| N1—N2—C2—S1 | 175.75 (14) | C4—C5—C6—C7 | −0.3 (3) |
| C1—N3—C2—N2 | 2.6 (2) | C3—N4—C7—C6 | −0.4 (3) |
| C8—N3—C2—N2 | 174.01 (16) | C5—C6—C7—N4 | 0.4 (3) |
| C1—N3—C2—S1 | −175.82 (15) | C1—N3—C8—C9 | −105.1 (2) |
| C8—N3—C2—S1 | −4.4 (3) | C2—N3—C8—C9 | 85.4 (2) |
| O1—S1—C2—N2 | −172.6 (3) |
Symmetry codes: (i) −x, y, −z−1/2; (ii) −x, −y, −z.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···N4iii | 0.88 (2) | 1.94 (2) | 2.792 (3) | 162 (2) |
Symmetry codes: (iii) x−1/2, y−1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2615).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011744/lh2615sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011744/lh2615Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


