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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Apr 26;64(Pt 5):o926. doi: 10.1107/S1600536808011501

N-(2-Phenyl­imidazo[1,2-a]pyridin-3-yl)acetamide

Abderrahmane Anaflous a, Hanane Albay a, Nour-eddine Benchat b, Brahim El Bali c, Michal Dušek d, Karla Fejfarová d,*
PMCID: PMC2961311  PMID: 21202407

Abstract

The crystal structure of the title compound, C15H13N3O, consists of columns of mol­ecules that are inter­connected by N—H⋯N hydrogen bonds in the direction of the b axis. The torsion angle between the imidazo[1,2-a]pyridine ring system and the phenyl ring is 9.04 (5)°.

Related literature

For general background, see Anaflous et al. (2004); Gueffier et al. (1998); Mavel et al. (2002).graphic file with name e-64-0o926-scheme1.jpg

Experimental

Crystal data

  • C15H13N3O

  • M r = 251.3

  • Monoclinic, Inline graphic

  • a = 13.9680 (5) Å

  • b = 5.6784 (2) Å

  • c = 15.8145 (5) Å

  • β = 101.039 (3)°

  • V = 1231.13 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 120 K

  • 0.58 × 0.25 × 0.17 mm

Data collection

  • Oxford Diffraction Xcalibur2 diffractometer with Sapphire2 CCD detector

  • Absorption correction: none

  • 15703 measured reflections

  • 2556 independent reflections

  • 1544 reflections with I > 3σ(I)

  • R int = 0.054

Refinement

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.084

  • S = 1.00

  • 2556 reflections

  • 175 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.17 e Å−3

  • Δρmin = −0.14 e Å−3

Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell refinement: CrysAlis RED (Oxford Diffraction, 2008); data reduction: CrysAlis RED; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: JANA2006 (Petříček et al., 2006); molecular graphics: DIAMOND (Brandenburg & Putz, 1999); software used to prepare material for publication: JANA2006.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011501/fj2112sup1.cif

e-64-0o926-sup1.cif (16.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011501/fj2112Isup2.hkl

e-64-0o926-Isup2.hkl (112.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3n⋯N1i 0.880 (12) 2.162 (12) 3.0219 (16) 165.4 (13)

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the Grant Agency of the Czech Republic for support, grant No. 202/05/0757.

supplementary crystallographic information

Comment

In recent years, functionalized imidazo[1,2-a]pyridine and imidazo[1,2-a]pyrimidine systems attracted persistent interest due to their biological activities (Anaflous et al., 2004 and reference herein). The screening of imidazo[1,2-a]pyridine derivatives against tuberculosis showed interesting results (Anaflous et al., 2004) and many functionalized imidazo[1,2-a]pyridines bearing a thioether side chain at the 3 position are reported as highly active against human cytomegalovirus and /or varicella-zoster virus (Gueffier et al., 1998 & Mavel et al., 2002).

We report in the present paper on the synthesis and crystal structure of N-(2-phenylimidazo[1,2-a]pyridin-3-yl)acetamide (I).

The molecules of the title compound are interconnected into columns extended along b by an N3—H3n···N1 hydrogen bonds (see Tab. 1). No bonding has been found between the columns that appear to be quite isolated.

Bonds and angles values are usual as those reported in similar compounds.

The torsion angle between the imidazo[1,2-a]pyridine and phenyl ring is 9.04 (5)°

Experimental

The commercially available 2-phenylimidazo[1,2-a]pyridin-3-amine (0.50 g, 2.4 mmole) in toluene (10 ml, 94 mmole) was treated with acetic anhydride (0.3 ml, 3.2 mmole). The mixture was stirred for two hours. Toluene was eliminated under reduced pressure and the residue was washed with water to give, after drying, 0.45 g (1.8 mmole) of N-(2-phenylimidazo[1,2-a]pyridin-3-yl)acetamide as colorless crystals.

Figures

Fig. 1.

Fig. 1.

View of the unit cell of the title structure along the axis b

Fig. 2.

Fig. 2.

Asymetric unit of title compound, showing 50% displacement ellispoids for non-H atoms.

Fig. 3.

Fig. 3.

The columns of molecules showing N—H···N hydrogen bonds

Crystal data

C15H13N3O F000 = 528
Mr = 251.3 Dx = 1.355 Mg m3
Monoclinic, P21/c Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4755 reflections
a = 13.9680 (5) Å θ = 2.6–26.5º
b = 5.6784 (2) Å µ = 0.09 mm1
c = 15.8145 (5) Å T = 120 K
β = 101.039 (3)º Prism, colorless
V = 1231.13 (7) Å3 0.58 × 0.25 × 0.17 mm
Z = 4

Data collection

Oxford Diffraction Xcalibur2 diffractometer with Sapphire2 CCD detector 2556 independent reflections
Radiation source: X-ray tube 1544 reflections with I > 3σ(I)
Monochromator: graphite Rint = 0.054
Detector resolution: 8.3438 pixels mm-1 θmax = 26.5º
T = 120 K θmin = 2.6º
Rotation method data acquisition using ω scans h = −17→17
Absorption correction: none k = −7→7
15703 measured reflections l = −19→19

Refinement

Refinement on F2 45 constraints
R[F2 > 2σ(F2)] = 0.036 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084 Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2]
S = 1.00 (Δ/σ)max = 0.006
2556 reflections Δρmax = 0.17 e Å3
175 parameters Δρmin = −0.14 e Å3
1 restraint Extinction correction: none

Special details

Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.All the H atoms were discernible in difference Fourier maps and could be refined to reasonable geometry. According to standard procedures for organic compounds the H atoms bonded to C atoms were constrained to ideal positions. The N—H distances were restrained to 0.87 Å with σ 0.01. The isotropic atomic displacement parameters of hydrogen atoms were evaluated as 1.2*Ueq of the parent atom.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.61764 (8) −0.2561 (2) 0.47985 (7) 0.0230 (4)
N2 0.56626 (7) 0.05089 (18) 0.39364 (7) 0.0206 (4)
N3 0.70718 (11) 0.3084 (2) 0.41732 (9) 0.0235 (5)
O1 0.79160 (9) 0.1417 (2) 0.32433 (8) 0.0298 (4)
C1 0.69090 (11) −0.0912 (2) 0.48648 (9) 0.0210 (5)
C2 0.66186 (9) 0.09842 (19) 0.43398 (8) 0.0224 (4)
C3 0.54173 (10) −0.1658 (2) 0.42431 (9) 0.0211 (5)
C4 0.44673 (11) −0.2519 (3) 0.39578 (9) 0.0238 (5)
C5 0.38234 (11) −0.1217 (3) 0.33930 (9) 0.0262 (5)
C6 0.41070 (11) 0.0979 (2) 0.30893 (9) 0.0272 (5)
C7 0.50162 (10) 0.1807 (3) 0.33604 (9) 0.0233 (5)
C8 0.78417 (11) −0.1346 (2) 0.54688 (10) 0.0220 (6)
C9 0.79074 (12) −0.3221 (3) 0.60385 (10) 0.0285 (5)
C10 0.87592 (12) −0.3699 (3) 0.66086 (10) 0.0317 (5)
C11 0.95689 (11) −0.2316 (3) 0.66266 (10) 0.0290 (5)
C12 0.95210 (12) −0.0434 (3) 0.60733 (10) 0.0373 (6)
C13 0.86634 (12) 0.0062 (3) 0.54974 (11) 0.0356 (6)
C14 0.77211 (11) 0.3171 (3) 0.36247 (10) 0.0220 (5)
C15 0.81873 (12) 0.5518 (3) 0.35553 (11) 0.0294 (6)
H3n 0.6911 (10) 0.4370 (19) 0.4423 (9) 0.0282*
H4 0.42756 −0.400812 0.415958 0.0285*
H5 0.317152 −0.17869 0.319756 0.0314*
H6 0.364663 0.187888 0.268776 0.0327*
H7 0.520896 0.328874 0.315284 0.028*
H9 0.734759 −0.420445 0.603502 0.0341*
H10 0.878784 −0.500882 0.699648 0.038*
H11 1.016393 −0.265961 0.702246 0.0348*
H12 1.008436 0.054304 0.608524 0.0447*
H13 0.863646 0.13862 0.511608 0.0427*
H15a 0.77381 0.67451 0.36305 0.0353*
H15b 0.876474 0.564915 0.399312 0.0353*
H15c 0.8358 (10) 0.5666 (19) 0.2998 (9) 0.0353*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0273 (7) 0.0188 (6) 0.0250 (7) −0.0018 (5) 0.0100 (6) −0.0017 (5)
N2 0.0230 (7) 0.0198 (6) 0.0205 (6) 0.0005 (5) 0.0079 (5) −0.0023 (5)
N3 0.0343 (9) 0.0126 (7) 0.0271 (8) −0.0014 (7) 0.0148 (7) −0.0020 (7)
O1 0.0405 (7) 0.0228 (6) 0.0305 (7) 0.0012 (6) 0.0176 (6) −0.0026 (5)
C1 0.0263 (9) 0.0171 (7) 0.0225 (8) −0.0029 (7) 0.0119 (7) −0.0042 (6)
C2 0.0267 (8) 0.0183 (6) 0.0245 (7) −0.0015 (6) 0.0108 (6) −0.0028 (5)
C3 0.0275 (9) 0.0186 (7) 0.0192 (8) 0.0014 (7) 0.0098 (7) −0.0021 (6)
C4 0.0304 (9) 0.0210 (8) 0.0227 (8) −0.0023 (7) 0.0120 (7) −0.0040 (6)
C5 0.0217 (9) 0.0333 (8) 0.0247 (8) −0.0023 (7) 0.0074 (7) −0.0094 (7)
C6 0.0317 (8) 0.0309 (8) 0.0195 (8) 0.0080 (6) 0.0062 (7) 0.0003 (6)
C7 0.0319 (8) 0.0197 (8) 0.0207 (8) 0.0027 (7) 0.0112 (7) −0.0005 (6)
C8 0.0226 (10) 0.0222 (8) 0.0222 (9) 0.0012 (7) 0.0068 (8) −0.0058 (7)
C9 0.0296 (9) 0.0261 (9) 0.0308 (9) −0.0033 (8) 0.0086 (7) 0.0015 (7)
C10 0.0338 (9) 0.0285 (8) 0.0327 (9) 0.0036 (7) 0.0061 (8) 0.0048 (7)
C11 0.0282 (8) 0.0324 (9) 0.0258 (8) 0.0039 (7) 0.0034 (7) −0.0015 (7)
C12 0.0293 (10) 0.0377 (9) 0.0425 (10) −0.0114 (8) 0.0013 (8) 0.0022 (7)
C13 0.0394 (10) 0.0306 (9) 0.0357 (10) −0.0038 (8) 0.0040 (8) 0.0111 (8)
C14 0.0251 (10) 0.0210 (9) 0.0203 (8) 0.0030 (7) 0.0055 (7) 0.0034 (7)
C15 0.0335 (10) 0.0248 (10) 0.0331 (11) −0.0032 (8) 0.0144 (9) 0.0020 (9)

Geometric parameters (Å, °)

N1—C1 1.3763 (18) C6—H6 0.96
N1—C3 1.3424 (17) C7—H7 0.96
N2—C2 1.3916 (15) C8—C9 1.387 (2)
N2—C3 1.3894 (17) C8—C13 1.393 (2)
N2—C7 1.3689 (16) C9—C10 1.375 (2)
N3—C2 1.3984 (19) C9—H9 0.96
N3—C14 1.371 (2) C10—C11 1.373 (2)
N3—H3n 0.880 (12) C10—H10 0.96
O1—C14 1.222 (2) C11—C12 1.375 (2)
C1—C2 1.3727 (18) C11—H11 0.96
C1—C8 1.481 (2) C12—C13 1.388 (2)
C3—C4 1.405 (2) C12—H12 0.96
C4—C5 1.359 (2) C13—H13 0.96
C4—H4 0.96 C14—C15 1.497 (2)
C5—C6 1.419 (2) C15—H15a 0.96
C5—H5 0.96 C15—H15b 0.96
C6—C7 1.345 (2) C15—H15c 0.960 (15)
C1—N1—C3 105.82 (11) C1—C8—C9 119.17 (14)
C2—N2—C3 106.91 (10) C1—C8—C13 122.90 (14)
C2—N2—C7 130.80 (11) C9—C8—C13 117.93 (14)
C3—N2—C7 122.27 (11) C8—C9—C10 121.26 (15)
C2—N3—C14 121.89 (13) C8—C9—H9 119.372
C2—N3—H3n 117.3 (9) C10—C9—H9 119.371
C14—N3—H3n 120.8 (9) C9—C10—C11 120.43 (14)
N1—C1—C2 110.99 (11) C9—C10—H10 119.784
N1—C1—C8 119.03 (12) C11—C10—H10 119.784
C2—C1—C8 129.96 (13) C10—C11—C12 119.48 (13)
N2—C2—N3 120.55 (11) C10—C11—H11 120.26
N2—C2—C1 105.77 (11) C12—C11—H11 120.259
N3—C2—C1 133.68 (12) C11—C12—C13 120.42 (15)
N1—C3—N2 110.49 (11) C11—C12—H12 119.792
N1—C3—C4 131.02 (13) C13—C12—H12 119.792
N2—C3—C4 118.48 (12) C8—C13—C12 120.48 (15)
C3—C4—C5 119.18 (14) C8—C13—H13 119.758
C3—C4—H4 120.41 C12—C13—H13 119.758
C5—C4—H4 120.41 N3—C14—O1 121.32 (15)
C4—C5—C6 120.52 (13) N3—C14—C15 115.37 (14)
C4—C5—H5 119.739 O1—C14—C15 123.28 (16)
C6—C5—H5 119.74 C14—C15—H15a 109.471
C5—C6—C7 120.46 (13) C14—C15—H15b 109.472
C5—C6—H6 119.768 C14—C15—H15c 109.5 (7)
C7—C6—H6 119.769 H15a—C15—H15b 109.472
N2—C7—C6 119.07 (13) H15a—C15—H15c 109.471
N2—C7—H7 120.466 H15b—C15—H15c 109.47
C6—C7—H7 120.465

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N3—H3n···N1i 0.880 (12) 2.162 (12) 3.0219 (16) 165.4 (13)

Symmetry codes: (i) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FJ2112).

References

  1. Anaflous, A., Benchat, N., Mimouni, M., Abouricha, S., Ben-Hadda, T., El Bali, B., Hakkou, A. & Hacht, B. (2004). Lett. Drug Des. Discovery, 1, 224—229.
  2. Brandenburg, K. & Putz, H. (1999). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Burla, M. C., Camalli, M., Carrozzini, B., Cascarano, G. L., Giacovazzo, C., Polidori, G. & Spagna, R. (2003). J. Appl. Cryst.36, 1103.
  4. Gueffier, A., Mavel, S., Lhassani, M., Elhakmaoui, A., Snoeck, R., Andrei, G., Chavignon, O., Teulade, J. C., Witvrouw, M., Balzarini, J., De Clercq, E. & Chapat, J. (1998). J. Med. Chem.41, 5108–5112. [DOI] [PubMed]
  5. Mavel, S., Renou, J. L., Galtier, C., Allouchi, H., Snoeck, R., Andrei, G., Balzarini, J., Gueffier, A. & De Clercq, E. (2002). Bioorg. Med Chem.10, 941–946. [DOI] [PubMed]
  6. Oxford Diffraction (2008). CrysAlis CCD andCrysAlis RED Oxford Diffraction Ltd., Abingdon, Oxfordshire, England.
  7. Petříček, V., Dušek, M. & Palatinus, L. (2006). JANA2006 Institute of Physics, Prague, Czech Republic.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011501/fj2112sup1.cif

e-64-0o926-sup1.cif (16.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011501/fj2112Isup2.hkl

e-64-0o926-Isup2.hkl (112.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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