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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Apr 16;64(Pt 5):o840. doi: 10.1107/S1600536808009318

4,6-Dinitro­benzene-1,3-diamine

Tian Zhou a,*, De-Fu Han b, Yong-Jun Hu b
PMCID: PMC2961321  PMID: 21202328

Abstract

The mol­ecule of the title compound, C6H6N4O4, is almost planar, being stabilized by two intra­molecular N—H⋯O hydrogen bonds. Further N—H⋯O links lead to a sheet in the crystal structure.

Related literature

For related literature, see: Siri & Braunstein (2005).graphic file with name e-64-0o840-scheme1.jpg

Experimental

Crystal data

  • C6H6N4O4

  • M r = 198.15

  • Triclinic, Inline graphic

  • a = 7.1294 (6) Å

  • b = 7.1770 (9) Å

  • c = 9.1289 (8) Å

  • α = 67.710 (6)°

  • β = 86.692 (6)°

  • γ = 62.214 (5)°

  • V = 378.30 (7) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.15 mm−1

  • T = 295 (2) K

  • 0.23 × 0.21 × 0.19 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.967, T max = 0.972

  • 2447 measured reflections

  • 1322 independent reflections

  • 1098 reflections with I > 2σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.187

  • S = 1.00

  • 1322 reflections

  • 127 parameters

  • H-atom parameters constrained

  • Δρmax = 0.50 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808009318/hb2712sup1.cif

e-64-0o840-sup1.cif (13.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009318/hb2712Isup2.hkl

e-64-0o840-Isup2.hkl (65.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O3i 0.86 2.24 3.074 (2) 162
N1—H1A⋯O1ii 0.86 2.47 2.917 (2) 113
N1—H1B⋯O4 0.86 2.05 2.667 (3) 128
N2—H2A⋯O2i 0.86 2.31 3.098 (2) 152
N2—H2B⋯O1 0.86 2.03 2.642 (2) 128
N2—H2B⋯O4iii 0.86 2.33 2.964 (3) 131

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the Science Foundation of Maoming University (grant No. 208033).

supplementary crystallographic information

Comment

As part of the ongoing investigations of biological structure-property relationships in amino-containing molecules (Siri & Braunstein, 2005), we now report the synthesis and structure of the title compound, (I), (Fig. 1).

The molecule of (I) is almost planar, being stabilised by two intramolecular N-H···O interactions (Table 1). The aromatic ring makes dihedral angles of 3.7 (2)° and 4.6 (3)° with the N3/O1/O2 and N4/O3/O4 nitro groups, respectively. Further intermolecular N-H···O hydrogen bonds result in (100) sheets in the crystal (Fig. 2).

Experimental

80 ml concentrated HN03 was added dropwise to 29.2 g 1,3-dichlorobenzene in 150 ml oleum (25% sulfur trioxide) and the mixture was stirred for 30 minutes. The resulting solution was poured over 2000 g crushed ice. After the ice has melted, sufficient 30% sodium hydroxide solution was added to achieve a pH of 7 and 24.2 g of 1,3-dinitro-4,6-dichlorobenzene (II) was obtained after filtration and drying. Then, 7.2 g of (II) and 50 ml 30% aqueous ammonia were sealed in a 100-ml autoclave and heated to 443 K for 24 h. After cooling to room temperature, 5.6 g (23% yield) of colourless blocks of (I) were recovered. Anal. Calc. for C6H6N4O4: C 36.34, H 3.03, N 28.28%; Found: C 36.32, H 3.01, N 28.29%.

Refinement

The H atoms were placed in calculated positions with C—H = 0.93Å and N—H = 0.86Å and refined as riding with Uiso(H) = 1.2Ueq(carrier).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), drawn with 50% displacement ellipsoids for the non-hydrogen atoms. The hydrogen bonds are shown as double-dashed lines.

Crystal data

C6H6N4O4 Z = 2
Mr = 198.15 F(000) = 204
Triclinic, P1 Dx = 1.740 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.1294 (6) Å Cell parameters from 1322 reflections
b = 7.1770 (9) Å θ = 3.4–25.1°
c = 9.1289 (8) Å µ = 0.15 mm1
α = 67.710 (6)° T = 295 K
β = 86.692 (6)° Block, colourless
γ = 62.214 (5)° 0.23 × 0.21 × 0.19 mm
V = 378.30 (7) Å3

Data collection

Bruker APEXII CCD diffractometer 1322 independent reflections
Radiation source: fine-focus sealed tube 1098 reflections with I > 2σ(I)
graphite Rint = 0.024
φ and ω scans θmax = 25.1°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −8→8
Tmin = 0.967, Tmax = 0.972 k = −3→8
2447 measured reflections l = −9→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.187 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.15P)2 + 0.0584P] where P = (Fo2 + 2Fc2)/3
1322 reflections (Δ/σ)max < 0.001
127 parameters Δρmax = 0.50 e Å3
0 restraints Δρmin = −0.24 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.2508 (3) 0.6981 (4) 0.8212 (2) 0.0307 (5)
C2 0.2639 (3) 0.8653 (4) 0.6845 (2) 0.0325 (6)
H2 0.2723 0.9844 0.6965 0.039*
C3 0.2654 (3) 0.8654 (3) 0.5319 (2) 0.0291 (5)
C4 0.2464 (3) 0.6832 (3) 0.5162 (2) 0.0284 (5)
C5 0.2400 (3) 0.5121 (3) 0.6491 (2) 0.0308 (5)
H5 0.2317 0.3932 0.6369 0.037*
C6 0.2457 (3) 0.5127 (3) 0.7994 (2) 0.0312 (5)
N1 0.2441 (3) 0.7171 (3) 0.9615 (2) 0.0399 (6)
H1A 0.2478 0.8319 0.9678 0.048*
H1B 0.2360 0.6146 1.0455 0.048*
N2 0.2856 (3) 1.0298 (3) 0.4091 (2) 0.0397 (5)
H2A 0.2977 1.1347 0.4248 0.048*
H2B 0.2865 1.0300 0.3148 0.048*
N3 0.2326 (3) 0.6701 (3) 0.3643 (2) 0.0332 (5)
N4 0.2487 (3) 0.3197 (3) 0.9290 (2) 0.0390 (5)
O1 0.2415 (3) 0.8172 (3) 0.24312 (17) 0.0490 (5)
O2 0.2106 (3) 0.5129 (3) 0.35769 (19) 0.0501 (5)
O3 0.2537 (4) 0.1638 (3) 0.9013 (2) 0.0635 (7)
O4 0.2458 (3) 0.3152 (3) 1.06588 (18) 0.0539 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0380 (11) 0.0317 (11) 0.0225 (10) −0.0169 (9) 0.0053 (8) −0.0108 (8)
C2 0.0471 (12) 0.0284 (11) 0.0280 (12) −0.0218 (9) 0.0058 (9) −0.0126 (9)
C3 0.0360 (11) 0.0269 (11) 0.0236 (10) −0.0160 (8) 0.0051 (8) −0.0082 (8)
C4 0.0354 (11) 0.0300 (11) 0.0207 (10) −0.0149 (9) 0.0052 (7) −0.0122 (9)
C5 0.0401 (11) 0.0256 (10) 0.0287 (11) −0.0172 (9) 0.0043 (8) −0.0112 (9)
C6 0.0415 (11) 0.0288 (11) 0.0220 (11) −0.0186 (9) 0.0041 (8) −0.0065 (9)
N1 0.0684 (13) 0.0374 (11) 0.0218 (10) −0.0307 (10) 0.0093 (8) −0.0132 (8)
N2 0.0674 (13) 0.0363 (10) 0.0241 (9) −0.0343 (10) 0.0092 (8) −0.0091 (8)
N3 0.0443 (10) 0.0319 (10) 0.0253 (9) −0.0185 (8) 0.0041 (7) −0.0129 (8)
N4 0.0593 (12) 0.0337 (11) 0.0265 (9) −0.0268 (9) 0.0078 (8) −0.0090 (8)
O1 0.0861 (13) 0.0490 (11) 0.0202 (8) −0.0406 (9) 0.0121 (7) −0.0121 (8)
O2 0.0847 (12) 0.0457 (10) 0.0358 (10) −0.0388 (9) 0.0054 (8) −0.0217 (8)
O3 0.1255 (18) 0.0439 (11) 0.0397 (10) −0.0569 (12) 0.0171 (10) −0.0147 (9)
O4 0.0979 (14) 0.0498 (11) 0.0214 (9) −0.0460 (10) 0.0134 (8) −0.0087 (8)

Geometric parameters (Å, °)

C1—N1 1.334 (3) C5—H5 0.9300
C1—C2 1.401 (3) C6—N4 1.432 (3)
C1—C6 1.435 (3) N1—H1A 0.8600
C2—C3 1.392 (3) N1—H1B 0.8600
C2—H2 0.9300 N2—H2A 0.8600
C3—N2 1.344 (3) N2—H2B 0.8600
C3—C4 1.434 (3) N3—O1 1.229 (2)
C4—C5 1.377 (3) N3—O2 1.233 (2)
C4—N3 1.437 (3) N4—O3 1.222 (3)
C5—C6 1.377 (3) N4—O4 1.236 (3)
N1—C1—C2 119.87 (19) C5—C6—N4 116.47 (18)
N1—C1—C6 123.84 (19) C5—C6—C1 120.45 (19)
C2—C1—C6 116.29 (19) N4—C6—C1 123.07 (19)
C3—C2—C1 124.43 (19) C1—N1—H1A 120.0
C3—C2—H2 117.8 C1—N1—H1B 120.0
C1—C2—H2 117.8 H1A—N1—H1B 120.0
N2—C3—C2 119.92 (18) C3—N2—H2A 120.0
N2—C3—C4 123.51 (19) C3—N2—H2B 120.0
C2—C3—C4 116.57 (18) H2A—N2—H2B 120.0
C5—C4—C3 120.39 (19) O1—N3—O2 121.21 (18)
C5—C4—N3 117.18 (18) O1—N3—C4 119.26 (17)
C3—C4—N3 122.43 (19) O2—N3—C4 119.52 (17)
C4—C5—C6 121.69 (19) O3—N4—O4 121.72 (17)
C4—C5—H5 119.2 O3—N4—C6 119.01 (18)
C6—C5—H5 119.2 O4—N4—C6 119.27 (18)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O3i 0.86 2.24 3.074 (2) 162
N1—H1A···O1ii 0.86 2.47 2.917 (2) 113
N1—H1B···O4 0.86 2.05 2.667 (3) 128
N2—H2A···O2i 0.86 2.31 3.098 (2) 152
N2—H2B···O1 0.86 2.03 2.642 (2) 128
N2—H2B···O4iii 0.86 2.33 2.964 (3) 131

Symmetry codes: (i) x, y+1, z; (ii) x, y, z+1; (iii) x, y+1, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB2712).

References

  1. Bruker (2001). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2004). SAINT-Plus and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Siri, O. & Braunstein, P. (2005). New J. Chem 29, 75–78.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808009318/hb2712sup1.cif

e-64-0o840-sup1.cif (13.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009318/hb2712Isup2.hkl

e-64-0o840-Isup2.hkl (65.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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