Abstract
In the title compound, C15H19N3O3, owing to an intramolecular O—H⋯N hydrogen bond, the pyridine and imidazole rings are nearly coplanar and are twisted from each other by a dihedral angle of only 0.92 (9)°. The molecules are linked through intermolecular N—H⋯O hydrogen bonding, forming an infinite chain parallel to the b axis.
Related literature
For usages of nicotinic acid and imidazole in coordination chemistry and medicinal chemistry, see: Liu et al. (2005 ▶); Zhao et al. (2007 ▶); He et al. (2005 ▶); Boovanahalli et al. (2007 ▶); Song et al. (2006 ▶).
Experimental
Crystal data
C15H19N3O3
M r = 289.33
Monoclinic,
a = 12.6916 (15) Å
b = 16.0748 (17) Å
c = 7.3801 (8) Å
β = 100.213 (7)°
V = 1481.8 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.09 mm−1
T = 293 (2) K
0.25 × 0.25 × 0.20 mm
Data collection
Rigaku Mercury2 diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.978, T max = 0.988
15016 measured reflections
3357 independent reflections
2413 reflections with I > 2σ(I)
R int = 0.045
Refinement
R[F 2 > 2σ(F 2)] = 0.051
wR(F 2) = 0.136
S = 1.03
3357 reflections
195 parameters
H-atom parameters constrained
Δρmax = 0.20 e Å−3
Δρmin = −0.20 e Å−3
Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007411/dn2325sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007411/dn2325Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N2 | 0.82 | 1.68 | 2.4984 (18) | 178 |
| N3—H3⋯O2i | 0.86 | 2.10 | 2.9330 (19) | 162 |
Symmetry code: (i)
.
Acknowledgments
This work was supported by a Start-up Grant from Southeast University to Professor Ren-Gen Xiong.
supplementary crystallographic information
Comment
The nicotinic acid and the imidazole group have found a wide range of applications in coordination chemistry as ligands, in medicinal chemistry and materials science (Liu et al. 2005; Zhao et al. 2007;He et al. 2005; Boovanahalli et al. 2007; Song et al. 2006). We report here the crystal structure of the title compound, C15H19N3O3.
Owing to an intramolecular O1-H1···N2 hydrogen, the pyridine and the imidazole rings are nearly planar, they are only twisted to each other by a dihedral angle of 0.91 (9) . In the imidazole ring, the C6=N2 bond distance of 1.282 (4) Å conforms to the value for a double bond, while the C11—N2 bond length of 1.472 (4) Å conforms to the value for a single bond. To the carboxyl group, the C9=O2 bond distance of 1.212 (4) Å conforms to the value for a double bond, while the C9—O1 bond length of 1.298 (4) Å conforms to the value for a single bond.
The molecules are linked through intermolecular N3-H3···O2 hydrogen bond forming an infinite chain parallel to the b axis. (Table 1 and Fig. 2).
Experimental
5-ethyl-2-(4-isopropyl-4-methyl-5-oxo-4,5-dihydro-1H-imidazol-2-yl)nicotinic acid (3 mmol) was dissolved in ethanol (20 ml) and evaporated in the air affording colorless block crystals of this compound suitable for X-ray analysis were obtained.
Refinement
All H atoms attached to C, N and O atoms were fixed geometrically and treated as riding with C–H = 0.98 Å (methine), 0.97Å(methylene), 0.96Å (methyl) and N–H= 0.86Å or O–H= 0.82 Å with Uiso(H) = 1.2Ueq(C, N) or Uiso(H) = 1.5Ueq(O, methyl).
Figures
Fig. 1.
Molecular view of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.H bond is shown as dashed line
Fig. 2.
Partial packing view of the title compound sgowing the formation of the chain parallel to the b axis. H bonds are shown as dashed lines. H atoms not involved in hydrogen bondins have been omitted for clarty.[Symmetry code: (i) 1-x, 1/2+y, 1/2-z]
Crystal data
| C15H19N3O3 | F000 = 616 |
| Mr = 289.33 | Dx = 1.297 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 2685 reflections |
| a = 12.6916 (15) Å | θ = 3.0–27.5º |
| b = 16.0748 (17) Å | µ = 0.09 mm−1 |
| c = 7.3801 (8) Å | T = 293 (2) K |
| β = 100.213 (7)º | Block, colorless |
| V = 1481.8 (3) Å3 | 0.25 × 0.25 × 0.20 mm |
| Z = 4 |
Data collection
| Rigaku Mercury2 (2x2 bin mode) diffractometer | 3357 independent reflections |
| Radiation source: fine-focus sealed tube | 2413 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.045 |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.4º |
| T = 293(2) K | θmin = 3.0º |
| ω scans | h = −16→16 |
| Absorption correction: Multi-scan(CrystalClear; Rigaku, 2005) | k = −20→20 |
| Tmin = 0.978, Tmax = 0.988 | l = −9→9 |
| 15016 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.051 | H-atom parameters constrained |
| wR(F2) = 0.136 | w = 1/[σ2(Fo2) + (0.0611P)2 + 0.3777P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max < 0.001 |
| 3357 reflections | Δρmax = 0.20 e Å−3 |
| 195 parameters | Δρmin = −0.20 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.56210 (12) | 0.92867 (8) | 0.3216 (2) | 0.0442 (4) | |
| N2 | 0.31126 (10) | 0.86524 (8) | 0.06785 (19) | 0.0358 (3) | |
| N3 | 0.38168 (11) | 0.99041 (8) | 0.1425 (2) | 0.0419 (4) | |
| H3 | 0.4293 | 1.0259 | 0.1901 | 0.050* | |
| O1 | 0.36104 (10) | 0.71477 (7) | 0.09236 (19) | 0.0484 (4) | |
| H1 | 0.3450 | 0.7642 | 0.0817 | 0.073* | |
| O2 | 0.48765 (11) | 0.63866 (7) | 0.2486 (2) | 0.0590 (4) | |
| O3 | 0.24362 (11) | 1.07812 (8) | 0.0169 (2) | 0.0626 (4) | |
| C1 | 0.65661 (14) | 0.90689 (11) | 0.4182 (3) | 0.0465 (5) | |
| H1A | 0.7023 | 0.9491 | 0.4702 | 0.056* | |
| C2 | 0.69167 (13) | 0.82543 (11) | 0.4465 (2) | 0.0385 (4) | |
| C3 | 0.62079 (13) | 0.76450 (10) | 0.3712 (2) | 0.0354 (4) | |
| H3A | 0.6409 | 0.7090 | 0.3883 | 0.042* | |
| C4 | 0.51990 (12) | 0.78314 (9) | 0.2704 (2) | 0.0304 (3) | |
| C5 | 0.49432 (12) | 0.86849 (9) | 0.2486 (2) | 0.0328 (4) | |
| C6 | 0.39348 (13) | 0.90513 (9) | 0.1502 (2) | 0.0337 (4) | |
| C7 | 0.80073 (15) | 0.80620 (13) | 0.5550 (3) | 0.0508 (5) | |
| H7A | 0.8117 | 0.7465 | 0.5559 | 0.061* | |
| H7B | 0.8035 | 0.8240 | 0.6813 | 0.061* | |
| C8 | 0.89069 (16) | 0.84795 (14) | 0.4789 (3) | 0.0624 (6) | |
| H8A | 0.8871 | 0.8321 | 0.3525 | 0.094* | |
| H8B | 0.9583 | 0.8309 | 0.5492 | 0.094* | |
| H8C | 0.8837 | 0.9072 | 0.4868 | 0.094* | |
| C9 | 0.45278 (13) | 0.70696 (10) | 0.2013 (2) | 0.0366 (4) | |
| C10 | 0.28196 (14) | 1.00956 (10) | 0.0468 (3) | 0.0429 (4) | |
| C11 | 0.22886 (13) | 0.92565 (10) | −0.0124 (2) | 0.0373 (4) | |
| C12 | 0.12537 (15) | 0.91484 (12) | 0.0676 (3) | 0.0492 (5) | |
| H12 | 0.0754 | 0.9583 | 0.0133 | 0.059* | |
| C13 | 0.0711 (2) | 0.83164 (17) | 0.0180 (4) | 0.0788 (8) | |
| H13A | 0.1161 | 0.7876 | 0.0757 | 0.118* | |
| H13B | 0.0592 | 0.8244 | −0.1131 | 0.118* | |
| H13C | 0.0038 | 0.8303 | 0.0602 | 0.118* | |
| C14 | 0.1441 (2) | 0.92685 (19) | 0.2749 (3) | 0.0857 (9) | |
| H14A | 0.0772 | 0.9224 | 0.3177 | 0.128* | |
| H14B | 0.1745 | 0.9809 | 0.3050 | 0.128* | |
| H14C | 0.1924 | 0.8849 | 0.3329 | 0.128* | |
| C15 | 0.21042 (17) | 0.91982 (12) | −0.2218 (3) | 0.0527 (5) | |
| H15A | 0.2770 | 0.9283 | −0.2638 | 0.079* | |
| H15B | 0.1600 | 0.9617 | −0.2737 | 0.079* | |
| H15C | 0.1827 | 0.8658 | −0.2596 | 0.079* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0384 (8) | 0.0285 (7) | 0.0620 (10) | −0.0038 (6) | −0.0019 (7) | −0.0006 (7) |
| N2 | 0.0334 (8) | 0.0269 (7) | 0.0458 (8) | 0.0002 (5) | 0.0031 (6) | −0.0001 (6) |
| N3 | 0.0331 (8) | 0.0247 (7) | 0.0644 (10) | −0.0015 (5) | −0.0008 (7) | −0.0006 (6) |
| O1 | 0.0437 (7) | 0.0250 (6) | 0.0718 (9) | −0.0017 (5) | −0.0033 (6) | −0.0029 (6) |
| O2 | 0.0513 (8) | 0.0237 (6) | 0.0970 (11) | 0.0032 (5) | −0.0003 (7) | 0.0047 (6) |
| O3 | 0.0492 (8) | 0.0285 (7) | 0.1029 (12) | 0.0087 (6) | −0.0057 (8) | 0.0011 (7) |
| C1 | 0.0397 (10) | 0.0354 (9) | 0.0593 (12) | −0.0075 (7) | −0.0049 (8) | 0.0004 (8) |
| C2 | 0.0355 (9) | 0.0396 (9) | 0.0395 (9) | −0.0003 (7) | 0.0046 (7) | 0.0054 (7) |
| C3 | 0.0386 (9) | 0.0292 (8) | 0.0400 (9) | 0.0040 (7) | 0.0113 (7) | 0.0051 (7) |
| C4 | 0.0324 (8) | 0.0261 (7) | 0.0344 (8) | 0.0009 (6) | 0.0105 (6) | 0.0024 (6) |
| C5 | 0.0317 (8) | 0.0266 (8) | 0.0403 (9) | −0.0008 (6) | 0.0072 (7) | 0.0011 (7) |
| C6 | 0.0349 (9) | 0.0251 (8) | 0.0421 (9) | −0.0004 (6) | 0.0091 (7) | 0.0006 (7) |
| C7 | 0.0420 (10) | 0.0496 (11) | 0.0555 (12) | 0.0018 (8) | −0.0059 (9) | 0.0090 (9) |
| C8 | 0.0375 (11) | 0.0660 (14) | 0.0808 (16) | 0.0043 (9) | 0.0022 (10) | −0.0005 (11) |
| C9 | 0.0375 (9) | 0.0255 (8) | 0.0482 (10) | 0.0001 (7) | 0.0112 (8) | −0.0016 (7) |
| C10 | 0.0386 (10) | 0.0300 (9) | 0.0593 (11) | 0.0029 (7) | 0.0064 (8) | 0.0006 (8) |
| C11 | 0.0334 (9) | 0.0291 (8) | 0.0476 (10) | 0.0020 (6) | 0.0021 (7) | 0.0004 (7) |
| C12 | 0.0350 (10) | 0.0503 (11) | 0.0615 (12) | −0.0035 (8) | 0.0063 (8) | −0.0040 (9) |
| C13 | 0.0650 (15) | 0.0823 (18) | 0.0907 (19) | −0.0356 (13) | 0.0180 (13) | −0.0154 (14) |
| C14 | 0.0713 (17) | 0.122 (2) | 0.0717 (17) | −0.0306 (15) | 0.0344 (13) | −0.0326 (16) |
| C15 | 0.0595 (13) | 0.0493 (11) | 0.0468 (11) | 0.0068 (9) | 0.0029 (9) | 0.0032 (9) |
Geometric parameters (Å, °)
| N1—C1 | 1.329 (2) | C7—H7A | 0.9700 |
| N1—C5 | 1.342 (2) | C7—H7B | 0.9700 |
| N2—C6 | 1.282 (2) | C8—H8A | 0.9600 |
| N2—C11 | 1.472 (2) | C8—H8B | 0.9600 |
| N3—C10 | 1.370 (2) | C8—H8C | 0.9600 |
| N3—C6 | 1.379 (2) | C10—C11 | 1.536 (2) |
| N3—H3 | 0.8600 | C11—C15 | 1.524 (3) |
| O1—C9 | 1.298 (2) | C11—C12 | 1.543 (3) |
| O1—H1 | 0.8200 | C12—C14 | 1.518 (3) |
| O2—C9 | 1.2118 (19) | C12—C13 | 1.519 (3) |
| O3—C10 | 1.209 (2) | C12—H12 | 0.9800 |
| C1—C2 | 1.387 (2) | C13—H13A | 0.9600 |
| C1—H1A | 0.9300 | C13—H13B | 0.9600 |
| C2—C3 | 1.378 (2) | C13—H13C | 0.9600 |
| C2—C7 | 1.503 (2) | C14—H14A | 0.9600 |
| C3—C4 | 1.395 (2) | C14—H14B | 0.9600 |
| C3—H3A | 0.9300 | C14—H14C | 0.9600 |
| C4—C5 | 1.412 (2) | C15—H15A | 0.9600 |
| C4—C9 | 1.527 (2) | C15—H15B | 0.9600 |
| C5—C6 | 1.477 (2) | C15—H15C | 0.9600 |
| C7—C8 | 1.515 (3) | ||
| C1—N1—C5 | 118.60 (14) | O2—C9—O1 | 120.50 (15) |
| C6—N2—C11 | 108.73 (13) | O2—C9—C4 | 118.47 (15) |
| C10—N3—C6 | 109.15 (14) | O1—C9—C4 | 121.02 (13) |
| C10—N3—H3 | 125.4 | O3—C10—N3 | 127.14 (17) |
| C6—N3—H3 | 125.4 | O3—C10—C11 | 127.32 (16) |
| C9—O1—H1 | 109.5 | N3—C10—C11 | 105.54 (13) |
| N1—C1—C2 | 124.36 (16) | N2—C11—C15 | 109.74 (14) |
| N1—C1—H1A | 117.8 | N2—C11—C10 | 102.72 (13) |
| C2—C1—H1A | 117.8 | C15—C11—C10 | 108.85 (15) |
| C3—C2—C1 | 116.18 (15) | N2—C11—C12 | 111.34 (14) |
| C3—C2—C7 | 122.83 (16) | C15—C11—C12 | 113.15 (15) |
| C1—C2—C7 | 120.99 (16) | C10—C11—C12 | 110.51 (14) |
| C2—C3—C4 | 122.28 (15) | C14—C12—C13 | 109.8 (2) |
| C2—C3—H3A | 118.9 | C14—C12—C11 | 112.33 (16) |
| C4—C3—H3A | 118.9 | C13—C12—C11 | 112.79 (17) |
| C3—C4—C5 | 116.13 (14) | C14—C12—H12 | 107.2 |
| C3—C4—C9 | 114.27 (14) | C13—C12—H12 | 107.2 |
| C5—C4—C9 | 129.60 (14) | C11—C12—H12 | 107.2 |
| N1—C5—C4 | 122.43 (15) | C12—C13—H13A | 109.5 |
| N1—C5—C6 | 110.34 (13) | C12—C13—H13B | 109.5 |
| C4—C5—C6 | 127.23 (14) | H13A—C13—H13B | 109.5 |
| N2—C6—N3 | 113.84 (14) | C12—C13—H13C | 109.5 |
| N2—C6—C5 | 126.50 (14) | H13A—C13—H13C | 109.5 |
| N3—C6—C5 | 119.66 (14) | H13B—C13—H13C | 109.5 |
| C2—C7—C8 | 113.25 (16) | C12—C14—H14A | 109.5 |
| C2—C7—H7A | 108.9 | C12—C14—H14B | 109.5 |
| C8—C7—H7A | 108.9 | H14A—C14—H14B | 109.5 |
| C2—C7—H7B | 108.9 | C12—C14—H14C | 109.5 |
| C8—C7—H7B | 108.9 | H14A—C14—H14C | 109.5 |
| H7A—C7—H7B | 107.7 | H14B—C14—H14C | 109.5 |
| C7—C8—H8A | 109.5 | C11—C15—H15A | 109.5 |
| C7—C8—H8B | 109.5 | C11—C15—H15B | 109.5 |
| H8A—C8—H8B | 109.5 | H15A—C15—H15B | 109.5 |
| C7—C8—H8C | 109.5 | C11—C15—H15C | 109.5 |
| H8A—C8—H8C | 109.5 | H15A—C15—H15C | 109.5 |
| H8B—C8—H8C | 109.5 | H15B—C15—H15C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N2 | 0.82 | 1.68 | 2.4984 (18) | 178 |
| N3—H3···O2i | 0.86 | 2.10 | 2.9330 (19) | 162 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DN2325).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007411/dn2325sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007411/dn2325Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


