Abstract
The title compound, C7H5Cl2NO2, crystallizes with two independent molecules in the asymmetric unit. The bond lengths and angles in both molecules are within normal ranges. In the crystal structure, weak intermolecular C—H⋯O hydrogen bonds link the molecules into layers parallel to the [010] plane.
Related literature
For details of the biological activity of the title compound, see: Wallace et al. (2006 ▶); Bondinell et al. (2002 ▶). For a related structure, see: McArdle et al. (1982 ▶).
Experimental
Crystal data
C7H5Cl2NO2
M r = 206.02
Monoclinic,
a = 8.033 (4) Å
b = 18.974 (9) Å
c = 11.240 (6) Å
β = 95.224 (8)°
V = 1705.9 (15) Å3
Z = 8
Mo Kα radiation
μ = 0.71 mm−1
T = 298 (2) K
0.45 × 0.19 × 0.06 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.739, T max = 0.958
8532 measured reflections
3012 independent reflections
2289 reflections with I > 2σ(I)
R int = 0.035
Refinement
R[F 2 > 2σ(F 2)] = 0.052
wR(F 2) = 0.135
S = 1.08
3012 reflections
217 parameters
H-atom parameters constrained
Δρmax = 0.25 e Å−3
Δρmin = −0.18 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808011914/hg2396sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011914/hg2396Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C6—H6A⋯O3i | 0.93 | 2.41 | 3.309 (4) | 162 |
C11—H11A⋯O2ii | 0.93 | 2.60 | 3.513 (4) | 168 |
Symmetry codes: (i) ; (ii)
.
supplementary crystallographic information
Comment
Methyl 4,6-dichloropyridine-3-carboxylate is a useful intermediate for the synthesis of different kinase inhibitors (Wallace et al., 2006; Bondinell et al., 2002). In this paper, we report the crystal structure of the title compound (I).
Compound (I) crystallizes with two independent molecules in the asymmetric unit (Fig. 1), all bond lengths and angles are normal and in a good agreement with those reported previously (McArdle et al., 1982). The dihedral angles between the planes of the methoxycarbonyl group (C1/C2/O1/O2; C8/C9/O3/O4) and pyridine rings in the two independent molecules are 10.9 (2) and 8.1 (4)°. In the crystal structure, weak intermolecular C—H···O hydrogen bonds link the molecules into layers parallel to the b axis.
Experimental
Methyl 4, 6-dichloropyridine-3-carboxylate was synthesized from Methyl 4, 6-dihydroxypyridine-3-carboxylate via chlorination with POCl3. The desired compound was obtained as a low melting yellow solid in 89% yield. Crystals suitable for X-ray diffraction analysis were obtained by slow evaporation of a solution in a hexane/dichloromethane mixture (1: 4 v/v) at room temperature over a period of one week.
Refinement
All H atoms were placed in calculated positions, with C—H = 0.93 or 0.96 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2 times Ueq(C).
Figures
Fig. 1.
View of the title compound (I), with displacement ellipsoids drawn at the 40% probability level.
Crystal data
C7H5Cl2NO2 | F000 = 832 |
Mr = 206.02 | Dx = 1.604 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1274 reflections |
a = 8.033 (4) Å | θ = 2.8–27.9º |
b = 18.974 (9) Å | µ = 0.72 mm−1 |
c = 11.240 (6) Å | T = 298 (2) K |
β = 95.224 (8)º | Block, colorless |
V = 1705.9 (15) Å3 | 0.45 × 0.19 × 0.06 mm |
Z = 8 |
Data collection
Bruker SMART CCD area-detector diffractometer | 3012 independent reflections |
Radiation source: fine-focus sealed tube | 2289 reflections with I > 2σ(I) |
Monochromator: graphite | Rint = 0.035 |
T = 298(2) K | θmax = 25.0º |
φ and ω scans | θmin = 2.1º |
Absorption correction: multi-scan(SADABS; Sheldrick, 2004) | h = −9→9 |
Tmin = 0.739, Tmax = 0.958 | k = −16→22 |
8532 measured reflections | l = −12→13 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.052 | H-atom parameters constrained |
wR(F2) = 0.135 | w = 1/[σ2(Fo2) + (0.0645P)2 + 0.3441P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
3012 reflections | Δρmax = 0.25 e Å−3 |
217 parameters | Δρmin = −0.18 e Å−3 |
Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.31475 (11) | 0.33695 (5) | 0.64891 (7) | 0.0715 (3) | |
Cl4 | 0.81189 (12) | 0.14450 (4) | 1.15267 (7) | 0.0730 (3) | |
Cl3 | 0.49419 (14) | 0.01243 (5) | 0.78099 (8) | 0.0883 (4) | |
Cl2 | 0.16454 (16) | 0.07877 (5) | 0.49234 (11) | 0.1033 (4) | |
O4 | 0.0012 (3) | 0.39718 (12) | 0.3185 (2) | 0.0810 (7) | |
O1 | 0.6147 (3) | 0.33347 (11) | 0.9518 (2) | 0.0761 (7) | |
C3 | 0.6515 (3) | 0.21244 (15) | 0.9614 (2) | 0.0494 (7) | |
C4 | 0.5571 (4) | 0.20765 (17) | 0.8514 (3) | 0.0629 (8) | |
H4A | 0.5253 | 0.2497 | 0.8133 | 0.075* | |
O2 | 0.7987 (3) | 0.29383 (12) | 1.0946 (2) | 0.0859 (8) | |
C6 | 0.6496 (4) | 0.08658 (16) | 0.9608 (3) | 0.0586 (8) | |
H6A | 0.6799 | 0.0434 | 0.9955 | 0.070* | |
N1 | 0.5088 (4) | 0.14837 (15) | 0.7965 (2) | 0.0676 (7) | |
C10 | 0.1250 (3) | 0.30967 (15) | 0.4395 (2) | 0.0496 (7) | |
C11 | 0.0479 (4) | 0.25996 (16) | 0.3617 (3) | 0.0570 (8) | |
H11A | −0.0152 | 0.2765 | 0.2940 | 0.068* | |
C13 | 0.2303 (4) | 0.21170 (16) | 0.5586 (3) | 0.0585 (8) | |
H13A | 0.2924 | 0.1930 | 0.6251 | 0.070* | |
O3 | 0.1841 (4) | 0.43167 (13) | 0.4631 (2) | 0.1010 (10) | |
C5 | 0.5558 (4) | 0.09031 (17) | 0.8522 (3) | 0.0603 (8) | |
C7 | 0.6965 (4) | 0.14869 (15) | 1.0159 (2) | 0.0504 (7) | |
C9 | 0.1096 (4) | 0.38562 (17) | 0.4109 (3) | 0.0574 (8) | |
C1 | 0.6574 (6) | 0.40446 (18) | 0.9884 (4) | 0.0940 (13) | |
H1B | 0.5889 | 0.4371 | 0.9405 | 0.141* | |
H1C | 0.7730 | 0.4131 | 0.9781 | 0.141* | |
H1D | 0.6388 | 0.4105 | 1.0710 | 0.141* | |
N2 | 0.0578 (3) | 0.19055 (14) | 0.3773 (2) | 0.0640 (7) | |
C14 | 0.2165 (4) | 0.28322 (15) | 0.5410 (2) | 0.0505 (7) | |
C2 | 0.6989 (4) | 0.28237 (16) | 1.0116 (3) | 0.0552 (7) | |
C8 | −0.0218 (5) | 0.46966 (19) | 0.2809 (3) | 0.0893 (12) | |
H8A | −0.1038 | 0.4719 | 0.2133 | 0.134* | |
H8B | 0.0823 | 0.4883 | 0.2591 | 0.134* | |
H8C | −0.0592 | 0.4969 | 0.3453 | 0.134* | |
C12 | 0.1485 (4) | 0.16916 (16) | 0.4737 (3) | 0.0612 (8) |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0777 (6) | 0.0746 (6) | 0.0578 (5) | −0.0105 (4) | −0.0170 (4) | −0.0072 (4) |
Cl4 | 0.0903 (7) | 0.0682 (5) | 0.0546 (5) | 0.0025 (4) | −0.0261 (4) | 0.0098 (4) |
Cl3 | 0.1127 (9) | 0.0703 (6) | 0.0774 (6) | −0.0146 (5) | −0.0161 (5) | −0.0120 (4) |
Cl2 | 0.1327 (10) | 0.0557 (5) | 0.1145 (8) | 0.0077 (6) | −0.0265 (7) | −0.0019 (5) |
O4 | 0.0964 (19) | 0.0624 (14) | 0.0776 (15) | −0.0033 (13) | −0.0278 (14) | 0.0115 (12) |
O1 | 0.0920 (18) | 0.0560 (13) | 0.0748 (15) | 0.0027 (12) | −0.0222 (12) | 0.0056 (11) |
C3 | 0.0457 (17) | 0.0590 (18) | 0.0425 (15) | 0.0017 (13) | −0.0020 (12) | 0.0062 (13) |
C4 | 0.072 (2) | 0.0584 (19) | 0.0548 (18) | −0.0003 (16) | −0.0144 (15) | 0.0074 (15) |
O2 | 0.107 (2) | 0.0698 (16) | 0.0729 (15) | −0.0033 (14) | −0.0369 (14) | −0.0034 (12) |
C6 | 0.064 (2) | 0.0565 (18) | 0.0530 (18) | 0.0022 (15) | −0.0044 (15) | 0.0079 (14) |
N1 | 0.076 (2) | 0.0683 (18) | 0.0538 (15) | −0.0015 (14) | −0.0175 (13) | 0.0034 (13) |
C10 | 0.0448 (17) | 0.0594 (18) | 0.0444 (15) | −0.0022 (14) | 0.0035 (12) | −0.0019 (13) |
C11 | 0.059 (2) | 0.064 (2) | 0.0466 (16) | −0.0005 (15) | −0.0042 (14) | −0.0028 (14) |
C13 | 0.0565 (19) | 0.066 (2) | 0.0509 (17) | 0.0018 (15) | −0.0056 (14) | 0.0038 (14) |
O3 | 0.136 (3) | 0.0614 (16) | 0.0958 (19) | −0.0204 (15) | −0.0430 (18) | 0.0030 (13) |
C5 | 0.064 (2) | 0.063 (2) | 0.0528 (17) | −0.0050 (16) | −0.0029 (15) | −0.0045 (15) |
C7 | 0.0465 (17) | 0.0616 (18) | 0.0418 (15) | 0.0028 (14) | −0.0031 (12) | 0.0062 (13) |
C9 | 0.058 (2) | 0.064 (2) | 0.0501 (17) | −0.0045 (16) | −0.0014 (15) | 0.0015 (15) |
C1 | 0.133 (4) | 0.053 (2) | 0.090 (3) | 0.003 (2) | −0.020 (2) | −0.0003 (18) |
N2 | 0.0729 (19) | 0.0568 (16) | 0.0602 (16) | −0.0026 (13) | −0.0062 (13) | −0.0087 (13) |
C14 | 0.0462 (17) | 0.0586 (18) | 0.0464 (16) | −0.0040 (13) | 0.0034 (13) | −0.0036 (13) |
C2 | 0.061 (2) | 0.0597 (18) | 0.0445 (16) | 0.0022 (15) | 0.0002 (14) | 0.0054 (14) |
C8 | 0.105 (3) | 0.068 (2) | 0.090 (3) | 0.002 (2) | −0.016 (2) | 0.0210 (19) |
C12 | 0.064 (2) | 0.0546 (18) | 0.064 (2) | 0.0040 (15) | −0.0002 (16) | −0.0012 (15) |
Geometric parameters (Å, °)
Cl1—C14 | 1.720 (3) | N1—C5 | 1.306 (4) |
Cl4—C7 | 1.723 (3) | C10—C11 | 1.392 (4) |
Cl3—C5 | 1.731 (3) | C10—C14 | 1.393 (4) |
Cl2—C12 | 1.731 (3) | C10—C9 | 1.479 (4) |
O4—C9 | 1.313 (4) | C11—N2 | 1.330 (4) |
O4—C8 | 1.446 (4) | C11—H11A | 0.9300 |
O1—C2 | 1.329 (4) | C13—C12 | 1.371 (4) |
O1—C1 | 1.441 (4) | C13—C14 | 1.374 (4) |
C3—C7 | 1.389 (4) | C13—H13A | 0.9300 |
C3—C4 | 1.393 (4) | O3—C9 | 1.184 (4) |
C3—C2 | 1.478 (4) | C1—H1B | 0.9600 |
C4—N1 | 1.324 (4) | C1—H1C | 0.9600 |
C4—H4A | 0.9300 | C1—H1D | 0.9600 |
O2—C2 | 1.194 (4) | N2—C12 | 1.314 (4) |
C6—C7 | 1.368 (4) | C8—H8A | 0.9600 |
C6—C5 | 1.376 (4) | C8—H8B | 0.9600 |
C6—H6A | 0.9300 | C8—H8C | 0.9600 |
C9—O4—C8 | 116.6 (3) | C3—C7—Cl4 | 122.1 (2) |
C2—O1—C1 | 116.2 (3) | O3—C9—O4 | 122.6 (3) |
C7—C3—C4 | 115.7 (3) | O3—C9—C10 | 125.7 (3) |
C7—C3—C2 | 124.4 (2) | O4—C9—C10 | 111.8 (3) |
C4—C3—C2 | 119.8 (3) | O1—C1—H1B | 109.5 |
N1—C4—C3 | 125.6 (3) | O1—C1—H1C | 109.5 |
N1—C4—H4A | 117.2 | H1B—C1—H1C | 109.5 |
C3—C4—H4A | 117.2 | O1—C1—H1D | 109.5 |
C7—C6—C5 | 117.6 (3) | H1B—C1—H1D | 109.5 |
C7—C6—H6A | 121.2 | H1C—C1—H1D | 109.5 |
C5—C6—H6A | 121.2 | C12—N2—C11 | 115.9 (3) |
C5—N1—C4 | 115.7 (3) | C13—C14—C10 | 120.2 (3) |
C11—C10—C14 | 116.2 (3) | C13—C14—Cl1 | 117.2 (2) |
C11—C10—C9 | 120.0 (3) | C10—C14—Cl1 | 122.5 (2) |
C14—C10—C9 | 123.8 (3) | O2—C2—O1 | 122.5 (3) |
N2—C11—C10 | 124.8 (3) | O2—C2—C3 | 126.4 (3) |
N2—C11—H11A | 117.6 | O1—C2—C3 | 111.2 (3) |
C10—C11—H11A | 117.6 | O4—C8—H8A | 109.5 |
C12—C13—C14 | 117.0 (3) | O4—C8—H8B | 109.5 |
C12—C13—H13A | 121.5 | H8A—C8—H8B | 109.5 |
C14—C13—H13A | 121.5 | O4—C8—H8C | 109.5 |
N1—C5—C6 | 125.4 (3) | H8A—C8—H8C | 109.5 |
N1—C5—Cl3 | 116.1 (2) | H8B—C8—H8C | 109.5 |
C6—C5—Cl3 | 118.5 (2) | N2—C12—C13 | 125.9 (3) |
C6—C7—C3 | 120.0 (3) | N2—C12—Cl2 | 115.8 (2) |
C6—C7—Cl4 | 117.9 (2) | C13—C12—Cl2 | 118.2 (2) |
C7—C3—C4—N1 | −0.2 (5) | C11—C10—C9—O4 | 8.7 (4) |
C2—C3—C4—N1 | 179.1 (3) | C14—C10—C9—O4 | −172.4 (3) |
C3—C4—N1—C5 | −0.1 (5) | C10—C11—N2—C12 | −0.3 (5) |
C14—C10—C11—N2 | −0.9 (4) | C12—C13—C14—C10 | −1.1 (4) |
C9—C10—C11—N2 | 178.0 (3) | C12—C13—C14—Cl1 | 178.5 (2) |
C4—N1—C5—C6 | −0.1 (5) | C11—C10—C14—C13 | 1.6 (4) |
C4—N1—C5—Cl3 | −179.7 (2) | C9—C10—C14—C13 | −177.3 (3) |
C7—C6—C5—N1 | 0.6 (5) | C11—C10—C14—Cl1 | −178.0 (2) |
C7—C6—C5—Cl3 | −179.8 (2) | C9—C10—C14—Cl1 | 3.1 (4) |
C5—C6—C7—C3 | −0.9 (5) | C1—O1—C2—O2 | 3.5 (5) |
C5—C6—C7—Cl4 | 179.3 (2) | C1—O1—C2—C3 | −176.6 (3) |
C4—C3—C7—C6 | 0.7 (4) | C7—C3—C2—O2 | 11.1 (5) |
C2—C3—C7—C6 | −178.5 (3) | C4—C3—C2—O2 | −168.0 (3) |
C4—C3—C7—Cl4 | −179.5 (2) | C7—C3—C2—O1 | −168.8 (3) |
C2—C3—C7—Cl4 | 1.3 (4) | C4—C3—C2—O1 | 12.0 (4) |
C8—O4—C9—O3 | 1.1 (5) | C11—N2—C12—C13 | 0.9 (5) |
C8—O4—C9—C10 | −178.8 (3) | C11—N2—C12—Cl2 | −178.8 (2) |
C11—C10—C9—O3 | −171.2 (3) | C14—C13—C12—N2 | −0.2 (5) |
C14—C10—C9—O3 | 7.7 (5) | C14—C13—C12—Cl2 | 179.5 (2) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6A···O3i | 0.93 | 2.41 | 3.309 (4) | 162 |
C11—H11A···O2ii | 0.93 | 2.60 | 3.513 (4) | 168 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) x−1, y, z−1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2396).
References
- Bondinell, W. E., Holt, D. A., Lago, M. A., Neeb, M. J. & Semones, M. A. (2002). World Wide Patent. WO 02 076 463.
- Bruker (2001). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- McArdle, J. V., de Laubenfels, E., Shorter, A. L. & Ammon, H. L. (1982). Polyhedron, 1, 471–474.
- Sheldrick, G. M. (2004). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Wallace, E., Hurley, B., Yang, H. W., Lyssikatos, J. & Blake, J. (2006). United States Patent US 7 144 907.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808011914/hg2396sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011914/hg2396Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report