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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 May 3;64(Pt 6):o960. doi: 10.1107/S1600536808011756

2-Hydr­oxy-(2-methyl-1H-indol-3-ylmethyl­idene)benzohydrazide ethanol solvate

Wagee A Yehye a, Azhar Ariffin a, Seik Weng Ng a,*
PMCID: PMC2961492  PMID: 21202690

Abstract

In the title compound, C17H15N3O2·C2H6O, Schiff base molecules are linked by a hydr­oxy–amido hydrogen bond into a helical chain running along the b axis. This chain is consolidated by two other hydrogen bonds; the ethanol solvent mol­ecule is a hydrogen-bond donor to the amide group and a hydrogen-bond acceptor for the indolyl NH group of an adjacent Schiff base mol­ecule.

Related literature

For reports on the medicinal properties of the unsubstituted compound, indol-3-ylmethyl­idene-2-hydroxy­benzohydrazide, see: Alemany et al. (1967); Fujikawa et al. (1966); Nakata et al. (1966); Singh et al. (1984).graphic file with name e-64-0o960-scheme1.jpg

Experimental

Crystal data

  • C17H15N3O2·C2H6O

  • M r = 339.39

  • Monoclinic, Inline graphic

  • a = 7.5907 (1) Å

  • b = 11.2269 (2) Å

  • c = 20.3014 (3) Å

  • β = 91.924 (1)°

  • V = 1729.11 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 100 (2) K

  • 0.34 × 0.27 × 0.12 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: none

  • 20827 measured reflections

  • 3967 independent reflections

  • 2869 reflections with I > 2σ(I)

  • R int = 0.056

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.162

  • S = 1.13

  • 3967 reflections

  • 230 parameters

  • H-atom parameters constrained

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011756/sg2238sup1.cif

e-64-0o960-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011756/sg2238Isup2.hkl

e-64-0o960-Isup2.hkl (194.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1o⋯O2i 0.84 1.76 2.594 (2) 176
O3—H3o⋯O2 0.84 2.02 2.843 (2) 165
N1—H1n⋯O1 0.88 1.91 2.618 (2) 136
N3—H3n⋯O3ii 0.88 1.96 2.824 (2) 168

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We acknowledge the SAGA grant (06–02-03–0147) for support of this study, and the University of Malaya for the purchase of the diffractometer.

supplementary crystallographic information

Comment

There are no reports of the title Schiff base but there are several reports on the medicinal properties of the unsubstituted compound, indol-3-ylmethylidene-2-hydroxybenzohydrazide (Alemany et al., 1967; Fujikawa et al., 1966; Nakata et al., 1966; Singh et al., 1984). The methyl-substituted title compound (Scheme I, Fig. 1) is a planar molecule that is linked by a hydroxy···amido hydrogen bond into a helical chain that runs along the b-axis of the monoclinic unit cell (Fig. 2). The chain is consolidated by two other hydrogen bonds: the ethanol molecule is hydrogen-bond donor to the amido unit well as hydrogen-bond acceptor to the aminoindolyl unit of adjacent Schiff bases.

Experimental

2-Hydroxybenzohyrazide (0.60 g, 4 mmol) and 2-methyl-1H-indole-3-carboxaldehyde (0.63 g, 4 mmol) were heated in ethanol (30 ml) for 3 h. The solvent was removed by evaporation and the light brown product recrystallized from ethanol.

Refinement

Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2–1.5 U(C).

The oxygen- and nitrogen-bound H-atoms were also generated geometrically (O–H 0.84, N–H 0.88 Å).

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot (Barbour, 2001) of C17H15N3O2.C2H6O at the 70% probability level. Hydrogen atoms are drawn as spheres of arbitrary radiius.

Fig. 2.

Fig. 2.

Hydrogen-bonded chain motif.

Crystal data

C17H15N3O2·C2H6O F000 = 720
Mr = 339.39 Dx = 1.304 Mg m3
Monoclinic, P21/c Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6771 reflections
a = 7.5907 (1) Å θ = 2.7–28.2º
b = 11.2269 (2) Å µ = 0.09 mm1
c = 20.3014 (3) Å T = 100 (2) K
β = 91.924 (1)º Prism, yellow
V = 1729.11 (5) Å3 0.34 × 0.27 × 0.12 mm
Z = 4

Data collection

Bruker SMART APEX diffractometer 2869 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.056
Monochromator: graphite θmax = 27.5º
T = 100(2) K θmin = 2.0º
ω scans h = −9→9
Absorption correction: None k = −14→14
20827 measured reflections l = −26→22
3967 independent reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047 H-atom parameters constrained
wR(F2) = 0.162   w = 1/[σ2(Fo2) + (0.0721P)2 + 0.9553P] where P = (Fo2 + 2Fc2)/3
S = 1.13 (Δ/σ)max = 0.001
3967 reflections Δρmax = 0.31 e Å3
230 parameters Δρmin = −0.30 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.60372 (18) 0.39960 (12) 0.26124 (6) 0.0287 (3)
H1O 0.6488 0.3342 0.2507 0.043*
O2 0.26721 (17) 0.69310 (12) 0.26809 (7) 0.0272 (3)
O3 −0.0963 (2) 0.65666 (15) 0.29094 (8) 0.0409 (4)
H3O 0.0126 0.6698 0.2916 0.061*
N1 0.3897 (2) 0.53879 (15) 0.32419 (7) 0.0255 (4)
H1N 0.4563 0.4746 0.3236 0.031*
N2 0.3081 (2) 0.57121 (15) 0.38183 (8) 0.0263 (4)
N3 0.1852 (2) 0.47451 (15) 0.59623 (8) 0.0265 (4)
H3N 0.1730 0.4372 0.6339 0.032*
C1 0.5678 (2) 0.46480 (17) 0.20605 (9) 0.0243 (4)
C2 0.6339 (3) 0.43017 (18) 0.14536 (10) 0.0283 (4)
H2 0.7025 0.3597 0.1425 0.034*
C3 0.5997 (3) 0.4978 (2) 0.08976 (10) 0.0313 (5)
H3 0.6462 0.4742 0.0489 0.038*
C4 0.4981 (3) 0.60009 (19) 0.09301 (10) 0.0311 (4)
H4 0.4760 0.6471 0.0547 0.037*
C5 0.4291 (2) 0.63320 (18) 0.15254 (9) 0.0270 (4)
H5 0.3583 0.7028 0.1545 0.032*
C6 0.4616 (2) 0.56639 (17) 0.20990 (9) 0.0233 (4)
C7 0.3674 (2) 0.60467 (17) 0.26980 (9) 0.0233 (4)
C8 0.3263 (2) 0.49282 (18) 0.42813 (9) 0.0258 (4)
H8 0.3859 0.4204 0.4194 0.031*
C9 0.2589 (2) 0.51224 (18) 0.49235 (9) 0.0258 (4)
C10 0.2617 (2) 0.42767 (18) 0.54211 (9) 0.0266 (4)
C11 0.3331 (3) 0.30424 (19) 0.54307 (10) 0.0324 (5)
H11A 0.2672 0.2556 0.5739 0.049*
H11B 0.4578 0.3060 0.5572 0.049*
H11C 0.3212 0.2698 0.4988 0.049*
C12 0.1752 (2) 0.61732 (18) 0.51780 (9) 0.0262 (4)
C13 0.1327 (3) 0.73007 (19) 0.49295 (10) 0.0304 (4)
H13 0.1621 0.7517 0.4494 0.036*
C14 0.0472 (3) 0.8094 (2) 0.53269 (11) 0.0343 (5)
H14 0.0185 0.8864 0.5161 0.041*
C15 0.0014 (3) 0.7792 (2) 0.59706 (11) 0.0359 (5)
H15 −0.0586 0.8356 0.6231 0.043*
C16 0.0425 (3) 0.66914 (19) 0.62286 (10) 0.0314 (5)
H16 0.0123 0.6483 0.6664 0.038*
C17 0.1302 (2) 0.58892 (18) 0.58288 (9) 0.0262 (4)
C18 −0.1888 (3) 0.7654 (2) 0.28171 (11) 0.0384 (5)
H18A −0.3059 0.7584 0.3014 0.046*
H18B −0.2077 0.7799 0.2339 0.046*
C19 −0.0926 (3) 0.8698 (2) 0.31203 (13) 0.0453 (6)
H19A −0.1676 0.9407 0.3088 0.068*
H19B 0.0163 0.8839 0.2886 0.068*
H19C −0.0637 0.8529 0.3585 0.068*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0333 (8) 0.0315 (7) 0.0215 (7) 0.0069 (6) 0.0051 (5) 0.0015 (6)
O2 0.0237 (7) 0.0306 (7) 0.0276 (7) 0.0012 (5) 0.0066 (5) 0.0015 (6)
O3 0.0288 (8) 0.0494 (10) 0.0452 (10) −0.0007 (7) 0.0132 (7) 0.0105 (7)
N1 0.0239 (8) 0.0333 (9) 0.0198 (8) 0.0029 (7) 0.0060 (6) −0.0004 (7)
N2 0.0214 (8) 0.0376 (9) 0.0202 (8) −0.0009 (7) 0.0053 (6) −0.0021 (7)
N3 0.0232 (8) 0.0368 (9) 0.0197 (8) −0.0011 (7) 0.0043 (6) 0.0004 (7)
C1 0.0210 (9) 0.0310 (10) 0.0209 (9) −0.0029 (7) 0.0021 (7) 0.0010 (7)
C2 0.0244 (9) 0.0346 (10) 0.0260 (10) 0.0019 (8) 0.0041 (7) −0.0026 (8)
C3 0.0292 (10) 0.0440 (12) 0.0211 (10) −0.0011 (9) 0.0062 (8) −0.0014 (8)
C4 0.0327 (10) 0.0399 (11) 0.0208 (9) −0.0021 (9) 0.0019 (8) 0.0045 (8)
C5 0.0251 (9) 0.0308 (10) 0.0252 (10) −0.0008 (8) 0.0021 (7) 0.0016 (8)
C6 0.0194 (8) 0.0302 (10) 0.0205 (9) −0.0040 (7) 0.0028 (7) −0.0016 (7)
C7 0.0185 (8) 0.0279 (9) 0.0236 (9) −0.0039 (7) 0.0016 (7) −0.0004 (7)
C8 0.0192 (9) 0.0341 (10) 0.0242 (10) −0.0012 (7) 0.0029 (7) −0.0017 (8)
C9 0.0173 (8) 0.0379 (11) 0.0224 (9) −0.0022 (7) 0.0018 (7) −0.0010 (8)
C10 0.0184 (8) 0.0391 (11) 0.0224 (9) −0.0029 (8) 0.0034 (7) −0.0018 (8)
C11 0.0308 (10) 0.0400 (11) 0.0268 (10) −0.0006 (9) 0.0069 (8) 0.0005 (9)
C12 0.0167 (8) 0.0396 (11) 0.0225 (9) −0.0030 (8) 0.0022 (7) −0.0026 (8)
C13 0.0222 (9) 0.0410 (11) 0.0279 (10) −0.0020 (8) 0.0021 (7) 0.0017 (9)
C14 0.0264 (10) 0.0362 (11) 0.0402 (12) 0.0025 (9) −0.0012 (9) 0.0009 (9)
C15 0.0280 (10) 0.0450 (12) 0.0349 (11) 0.0038 (9) 0.0026 (8) −0.0087 (10)
C16 0.0238 (9) 0.0447 (12) 0.0258 (10) −0.0009 (8) 0.0042 (8) −0.0055 (9)
C17 0.0177 (8) 0.0382 (11) 0.0226 (9) −0.0032 (7) 0.0012 (7) −0.0020 (8)
C18 0.0253 (10) 0.0568 (14) 0.0332 (11) 0.0033 (10) 0.0047 (8) 0.0130 (10)
C19 0.0292 (11) 0.0548 (15) 0.0520 (15) 0.0108 (10) 0.0026 (10) 0.0041 (12)

Geometric parameters (Å, °)

O1—C1 1.358 (2) C8—H8 0.9500
O1—H1O 0.8400 C9—C10 1.386 (3)
O2—C7 1.250 (2) C9—C12 1.444 (3)
O3—C18 1.417 (3) C10—C11 1.488 (3)
O3—H3O 0.8400 C11—H11A 0.9800
N1—C7 1.335 (2) C11—H11B 0.9800
N1—N2 1.391 (2) C11—H11C 0.9800
N1—H1N 0.8800 C12—C13 1.396 (3)
N2—C8 1.292 (3) C12—C17 1.412 (3)
N3—C10 1.365 (2) C13—C14 1.379 (3)
N3—C17 1.375 (3) C13—H13 0.9500
N3—H3N 0.8800 C14—C15 1.405 (3)
C1—C6 1.401 (3) C14—H14 0.9500
C1—C2 1.401 (3) C15—C16 1.374 (3)
C2—C3 1.378 (3) C15—H15 0.9500
C2—H2 0.9500 C16—C17 1.396 (3)
C3—C4 1.386 (3) C16—H16 0.9500
C3—H3 0.9500 C18—C19 1.502 (4)
C4—C5 1.384 (3) C18—H18A 0.9900
C4—H4 0.9500 C18—H18B 0.9900
C5—C6 1.400 (3) C19—H19A 0.9800
C5—H5 0.9500 C19—H19B 0.9800
C6—C7 1.494 (3) C19—H19C 0.9800
C8—C9 1.433 (3)
C1—O1—H1O 109.5 C9—C10—C11 130.10 (18)
C18—O3—H3O 109.5 C10—C11—H11A 109.5
C7—N1—N2 120.20 (16) C10—C11—H11B 109.5
C7—N1—H1N 119.9 H11A—C11—H11B 109.5
N2—N1—H1N 119.9 C10—C11—H11C 109.5
C8—N2—N1 113.21 (16) H11A—C11—H11C 109.5
C10—N3—C17 109.62 (16) H11B—C11—H11C 109.5
C10—N3—H3N 125.2 C13—C12—C17 118.84 (18)
C17—N3—H3N 125.2 C13—C12—C9 135.28 (18)
O1—C1—C6 119.52 (16) C17—C12—C9 105.88 (17)
O1—C1—C2 120.54 (17) C14—C13—C12 118.82 (19)
C6—C1—C2 119.93 (17) C14—C13—H13 120.6
C3—C2—C1 120.29 (19) C12—C13—H13 120.6
C3—C2—H2 119.9 C13—C14—C15 121.6 (2)
C1—C2—H2 119.9 C13—C14—H14 119.2
C2—C3—C4 120.49 (19) C15—C14—H14 119.2
C2—C3—H3 119.8 C16—C15—C14 120.8 (2)
C4—C3—H3 119.8 C16—C15—H15 119.6
C5—C4—C3 119.45 (19) C14—C15—H15 119.6
C5—C4—H4 120.3 C15—C16—C17 117.72 (19)
C3—C4—H4 120.3 C15—C16—H16 121.1
C4—C5—C6 121.42 (19) C17—C16—H16 121.1
C4—C5—H5 119.3 N3—C17—C16 129.46 (18)
C6—C5—H5 119.3 N3—C17—C12 108.30 (17)
C5—C6—C1 118.38 (17) C16—C17—C12 122.23 (19)
C5—C6—C7 116.57 (17) O3—C18—C19 112.73 (18)
C1—C6—C7 124.88 (17) O3—C18—H18A 109.0
O2—C7—N1 121.54 (17) C19—C18—H18A 109.0
O2—C7—C6 120.86 (17) O3—C18—H18B 109.0
N1—C7—C6 117.57 (16) C19—C18—H18B 109.0
N2—C8—C9 121.71 (18) H18A—C18—H18B 107.8
N2—C8—H8 119.1 C18—C19—H19A 109.5
C9—C8—H8 119.1 C18—C19—H19B 109.5
C10—C9—C8 124.18 (18) H19A—C19—H19B 109.5
C10—C9—C12 107.16 (17) C18—C19—H19C 109.5
C8—C9—C12 128.66 (18) H19A—C19—H19C 109.5
N3—C10—C9 109.04 (18) H19B—C19—H19C 109.5
N3—C10—C11 120.86 (17)
C7—N1—N2—C8 173.12 (16) C17—N3—C10—C11 −179.95 (17)
O1—C1—C2—C3 −178.81 (17) C8—C9—C10—N3 −179.13 (17)
C6—C1—C2—C3 2.2 (3) C12—C9—C10—N3 −0.1 (2)
C1—C2—C3—C4 −0.7 (3) C8—C9—C10—C11 1.4 (3)
C2—C3—C4—C5 −0.8 (3) C12—C9—C10—C11 −179.53 (19)
C3—C4—C5—C6 0.8 (3) C10—C9—C12—C13 −179.7 (2)
C4—C5—C6—C1 0.6 (3) C8—C9—C12—C13 −0.7 (4)
C4—C5—C6—C7 −174.79 (17) C10—C9—C12—C17 −0.4 (2)
O1—C1—C6—C5 178.89 (16) C8—C9—C12—C17 178.61 (18)
C2—C1—C6—C5 −2.1 (3) C17—C12—C13—C14 −0.4 (3)
O1—C1—C6—C7 −6.1 (3) C9—C12—C13—C14 178.8 (2)
C2—C1—C6—C7 172.88 (17) C12—C13—C14—C15 −0.3 (3)
N2—N1—C7—O2 −3.4 (3) C13—C14—C15—C16 0.7 (3)
N2—N1—C7—C6 178.81 (15) C14—C15—C16—C17 −0.2 (3)
C5—C6—C7—O2 −1.0 (3) C10—N3—C17—C16 178.45 (19)
C1—C6—C7—O2 −176.05 (17) C10—N3—C17—C12 −0.8 (2)
C5—C6—C7—N1 176.83 (16) C15—C16—C17—N3 −179.69 (19)
C1—C6—C7—N1 1.8 (3) C15—C16—C17—C12 −0.5 (3)
N1—N2—C8—C9 176.97 (16) C13—C12—C17—N3 −179.82 (16)
N2—C8—C9—C10 174.44 (18) C9—C12—C17—N3 0.7 (2)
N2—C8—C9—C12 −4.4 (3) C13—C12—C17—C16 0.9 (3)
C17—N3—C10—C9 0.5 (2) C9—C12—C17—C16 −178.58 (17)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1o···O2i 0.84 1.76 2.594 (2) 176
O3—H3o···O2 0.84 2.02 2.843 (2) 165
N1—H1n···O1 0.88 1.91 2.618 (2) 136
N3—H3n···O3ii 0.88 1.96 2.824 (2) 168

Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SG2238).

References

  1. Alemany, A., Bernabe Pajares, M. F., Fernandez Alvarez, E., Lora-Tamayo, M. & Nieto Lopez, O. (1967). Bull. Soc. Chim. Fr. pp. 780–786.
  2. Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Fujikawa, F., Yamashita, I., Seno, T., Sasaki, M., Naito, M. & Tsukuma, S. (1966). Yakugaku Zasshi, 86, 801–804. [DOI] [PubMed]
  5. Nakata, H., Harada, H. & Hirata, Y. (1966). Tetrahedron Lett. pp. 2515–2522.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Singh, I. P., Gurtu, S., Kumar, A., Sinha, J. N., Bhargava, K. P. & Shanker, K. (1984). Archiv Pharm. (Weinheim), 317, 609–614. [DOI] [PubMed]
  8. Westrip, S. P. (2008). publCIF In preparation.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011756/sg2238sup1.cif

e-64-0o960-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011756/sg2238Isup2.hkl

e-64-0o960-Isup2.hkl (194.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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