Abstract
The crystal structure of the title compound, C12H10ClF3O3, was determined in order to establish the configuration of the C=double bond. The compound was found to be the Z isomer. The crystal structure is dominated by Cl⋯O halogen bonds [Cl⋯O = 3.111 (3) Å], as well as C—H⋯O and C—H⋯F hydrogen-bonding interactions, that connect neighboring molecules into a three-dimensional supramolecular network.
Related literature
For related literature, see: Dmowski (1985 ▶); Fujita & Hiyama (1986 ▶); Nenajdenko et al.(2005 ▶); Politzer et al. (2007 ▶).
Experimental
Crystal data
C12H10ClF3O3
M r = 294.65
Triclinic,
a = 8.6168 (19) Å
b = 8.6850 (19) Å
c = 9.723 (2) Å
α = 77.323 (3)°
β = 70.869 (3)°
γ = 84.010 (3)°
V = 670.3 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.32 mm−1
T = 293 (2) K
0.16 × 0.10 × 0.09 mm
Data collection
Bruker APEX CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.943, T max = 0.968
3677 measured reflections
2551 independent reflections
1967 reflections with I > 2σ(I)
R int = 0.009
Refinement
R[F 2 > 2σ(F 2)] = 0.052
wR(F 2) = 0.146
S = 1.03
2551 reflections
174 parameters
H-atom parameters constrained
Δρmax = 0.31 e Å−3
Δρmin = −0.20 e Å−3
Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801489X/zl2108sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680801489X/zl2108Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C6—H6⋯F1i | 0.93 | 2.64 | 3.508 (3) | 156 |
| C7—H7⋯O2ii | 0.93 | 2.60 | 3.430 (3) | 149 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was supported by Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, People’s Republic of China.
supplementary crystallographic information
Comment
The title compound is an intermediate in the synthesis of trifluoromethyl substituted benzofurans. The configuration of analogue compounds such as 2-fluoro-3,3,3-trifluoroprop-1-enes (Dmowski, 1985), 2-chloro-3,3,3-trifluoroprop-1-enes (Fujita & Hiyama, 1986) or 2-bromo-3,3,3-trifluoroprop-1-enes (Nenajdenko et al., 2005) were determined by 1H and 19F NMR. The configuration of the title compound, however, could not be determined with enough confidence by 1H and 19F NMR due to lack of data such as hetero-nuclear coupling constants, and its crystal structure was determined instead to determine its configuiration.
As shown in Fig. 1, the title compound is the Z isomer with the phenyl ring and the Cl atom on the same side of the C═C double bond. The C═C double bond and the ester bond have a large torsional angle with the phenyl ring with a tilting angle of the double bond and a dihedral angle between the planes of the ester and the phenyl ring of 66.01 (4)° and 83.15 (3)°, respectively. The ether bond, on the other hand, is nearly coplanar with the the phenyl ring, with a dihedral angle between the normal of the phenyl ring plane and the ether bond of 87.34 (3)°.
The molecular packing is stablized by Cl···O halogen bonds (Politzer et al., 2007) between the Cl atom and the oxygen of a neighbouring ether bond, with a Cl—O3i distance of 3.111 (3) Å (symmetry code as in Fig. 2) and a nearly linear C—Cl···O3i angle of 178.0 (2)°. In addition, intermolecular C—H···O and C—H···F hydrogen bonds are present (Table 1 and Fig. 2). The two kinds of interactions lead to a three-dimensional supramolecular network. (Fig. 2).
Experimental
The title compound was synthesized by a modified literature procedure (Fujita & Hiyama, 1986). Zinc powder (3.25 g, 50 mmol) and acetic anhydride (3.06 g, 30 mmol) were added into a solution of 2-hydroxy-3-methoxybenzaldehyde (1.52 g,10 mmol) in DMF (20 ml, dried by 4Å molecular sieve) under an argon atmosphere at room temperature. Then 1,1,1-trichloro-2,2,2-trifluoroethane (5.63 g, 30 mmol) was added dropwise to the mixture over ten minutes with fierce stirring. The reaction was monitored by thin layer chromatography. After completion, the reaction mixture was treated with saturated aqueous ammonium chloride solution (150 ml), and extracted with diethyl ether (3 × 50 ml). The organic phase was dried with magnesium sulfate, concentrated, and purification by silica gel column chromatography using petroleum ether as the eluent (Rf = 0.15). The purified product was recrystallized from petroleum ether to obtain colorless platelike crystals (1.47 g, 50%).
Refinement
H atoms were placed geometrically and refined with fixed individual displacement parameters [Uiso(H) = 1.2Ueq(C,N)] (1.5 for methyl H atoms), using a riding model with C—H distances of 0.93 Å for Csp2 and 0.96 Å for methyl H atoms.
Figures
Fig. 1.
The structure of the title compound, showing the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
Perspective view of the packing structure of the title compound along the c axis. For the sake of clarity, H atoms not involved in the motifs shown have been omitted. Symmetry equivalent atoms marked i are created by the operator x, y+ 1, z).
Crystal data
| C12H10ClF3O3 | Z = 2 |
| Mr = 294.65 | F000 = 300 |
| Triclinic, P1 | Dx = 1.460 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
| a = 8.6168 (19) Å | Cell parameters from 1359 reflections |
| b = 8.6850 (19) Å | θ = 2.3–24.8º |
| c = 9.723 (2) Å | µ = 0.32 mm−1 |
| α = 77.323 (3)º | T = 293 (2) K |
| β = 70.869 (3)º | Sheet, colorless |
| γ = 84.010 (3)º | 0.16 × 0.10 × 0.09 mm |
| V = 670.3 (3) Å3 |
Data collection
| Bruker APEX CCD area-detector diffractometer | 2551 independent reflections |
| Radiation source: fine-focus sealed tube | 1967 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.009 |
| T = 293(2) K | θmax = 26.0º |
| φ and ω scans | θmin = 2.3º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −10→10 |
| Tmin = 0.943, Tmax = 0.968 | k = −10→4 |
| 3677 measured reflections | l = −11→11 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.052 | H-atom parameters constrained |
| wR(F2) = 0.146 | w = 1/[σ2(Fo2) + (0.0746P)2 + 0.2352P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max = 0.026 |
| 2551 reflections | Δρmax = 0.31 e Å−3 |
| 174 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl | 0.29665 (10) | 0.96976 (8) | 0.19741 (8) | 0.0749 (3) | |
| F1 | 0.3028 (3) | 0.8620 (2) | 0.5096 (2) | 0.0953 (6) | |
| F2 | 0.5445 (3) | 0.9077 (3) | 0.3604 (3) | 0.1170 (8) | |
| F3 | 0.4779 (3) | 0.6737 (3) | 0.4667 (2) | 0.1112 (8) | |
| O1 | 0.24346 (19) | 0.36598 (19) | 0.26609 (17) | 0.0504 (4) | |
| O2 | −0.0223 (2) | 0.4383 (3) | 0.3538 (2) | 0.0725 (6) | |
| O3 | 0.1566 (2) | 0.2860 (2) | 0.0539 (2) | 0.0692 (5) | |
| C1 | 0.4235 (4) | 0.8063 (4) | 0.4042 (4) | 0.0719 (8) | |
| C2 | 0.3680 (3) | 0.7914 (3) | 0.2776 (3) | 0.0538 (6) | |
| C3 | 0.3712 (3) | 0.6540 (3) | 0.2383 (3) | 0.0508 (6) | |
| H3 | 0.4071 | 0.5672 | 0.2966 | 0.061* | |
| C4 | 0.3255 (3) | 0.6202 (3) | 0.1150 (3) | 0.0481 (5) | |
| C5 | 0.3518 (3) | 0.7237 (3) | −0.0219 (3) | 0.0602 (7) | |
| H5 | 0.3972 | 0.8211 | −0.0378 | 0.072* | |
| C6 | 0.3106 (4) | 0.6812 (4) | −0.1326 (3) | 0.0674 (7) | |
| H6 | 0.3287 | 0.7509 | −0.2234 | 0.081* | |
| C7 | 0.2429 (3) | 0.5379 (4) | −0.1129 (3) | 0.0630 (7) | |
| H7 | 0.2137 | 0.5126 | −0.1890 | 0.076* | |
| C8 | 0.2185 (3) | 0.4316 (3) | 0.0209 (3) | 0.0539 (6) | |
| C9 | 0.2602 (3) | 0.4751 (3) | 0.1335 (2) | 0.0467 (5) | |
| C10 | 0.0917 (3) | 0.3562 (3) | 0.3710 (3) | 0.0519 (6) | |
| C11 | 0.0957 (4) | 0.2335 (4) | 0.5034 (3) | 0.0744 (8) | |
| H11A | 0.0105 | 0.2571 | 0.5893 | 0.112* | |
| H11B | 0.2006 | 0.2323 | 0.5184 | 0.112* | |
| H11C | 0.0788 | 0.1320 | 0.4878 | 0.112* | |
| C12 | 0.1195 (4) | 0.2342 (4) | −0.0610 (4) | 0.0830 (9) | |
| H12A | 0.0436 | 0.3086 | −0.0959 | 0.124* | |
| H12B | 0.0713 | 0.1326 | −0.0228 | 0.124* | |
| H12C | 0.2188 | 0.2266 | −0.1416 | 0.124* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl | 0.1011 (6) | 0.0514 (4) | 0.0688 (5) | 0.0024 (4) | −0.0266 (4) | −0.0073 (3) |
| F1 | 0.1230 (16) | 0.1053 (15) | 0.0688 (11) | 0.0132 (12) | −0.0362 (11) | −0.0389 (11) |
| F2 | 0.1136 (16) | 0.1319 (19) | 0.1389 (19) | −0.0336 (14) | −0.0565 (14) | −0.0555 (16) |
| F3 | 0.173 (2) | 0.0917 (14) | 0.1183 (16) | 0.0367 (14) | −0.1100 (16) | −0.0424 (12) |
| O1 | 0.0533 (9) | 0.0474 (9) | 0.0512 (9) | 0.0015 (7) | −0.0205 (8) | −0.0064 (7) |
| O2 | 0.0595 (11) | 0.0929 (15) | 0.0630 (12) | 0.0129 (10) | −0.0226 (9) | −0.0131 (10) |
| O3 | 0.0895 (14) | 0.0579 (11) | 0.0799 (13) | −0.0021 (10) | −0.0460 (11) | −0.0243 (10) |
| C1 | 0.085 (2) | 0.0677 (18) | 0.080 (2) | 0.0004 (16) | −0.0379 (17) | −0.0311 (16) |
| C2 | 0.0559 (14) | 0.0541 (14) | 0.0538 (14) | −0.0044 (11) | −0.0185 (11) | −0.0126 (11) |
| C3 | 0.0541 (13) | 0.0516 (13) | 0.0490 (13) | −0.0053 (11) | −0.0194 (11) | −0.0081 (11) |
| C4 | 0.0474 (12) | 0.0524 (13) | 0.0452 (13) | −0.0021 (10) | −0.0151 (10) | −0.0100 (10) |
| C5 | 0.0684 (16) | 0.0609 (16) | 0.0483 (14) | −0.0125 (13) | −0.0152 (12) | −0.0050 (12) |
| C6 | 0.0817 (19) | 0.0748 (19) | 0.0430 (14) | −0.0036 (15) | −0.0201 (13) | −0.0044 (13) |
| C7 | 0.0689 (17) | 0.0790 (19) | 0.0505 (15) | 0.0093 (14) | −0.0290 (13) | −0.0219 (13) |
| C8 | 0.0564 (14) | 0.0557 (15) | 0.0586 (15) | 0.0065 (11) | −0.0259 (12) | −0.0217 (12) |
| C9 | 0.0474 (12) | 0.0484 (13) | 0.0452 (12) | 0.0042 (10) | −0.0177 (10) | −0.0092 (10) |
| C10 | 0.0590 (15) | 0.0514 (13) | 0.0510 (14) | −0.0020 (12) | −0.0214 (11) | −0.0151 (11) |
| C11 | 0.0800 (19) | 0.0706 (19) | 0.0617 (17) | −0.0029 (15) | −0.0159 (15) | −0.0005 (14) |
| C12 | 0.091 (2) | 0.084 (2) | 0.098 (2) | 0.0006 (18) | −0.0437 (19) | −0.0489 (19) |
Geometric parameters (Å, °)
| Cl—C2 | 1.724 (3) | C5—C6 | 1.368 (4) |
| F1—C1 | 1.334 (4) | C5—H5 | 0.9300 |
| F2—C1 | 1.335 (4) | C6—C7 | 1.378 (4) |
| F3—C1 | 1.297 (4) | C6—H6 | 0.9300 |
| O1—C10 | 1.367 (3) | C7—C8 | 1.386 (4) |
| O1—C9 | 1.397 (3) | C7—H7 | 0.9300 |
| O2—C10 | 1.188 (3) | C8—C9 | 1.392 (3) |
| O3—C8 | 1.356 (3) | C10—C11 | 1.488 (4) |
| O3—C12 | 1.427 (3) | C11—H11A | 0.9600 |
| C1—C2 | 1.493 (4) | C11—H11B | 0.9600 |
| C2—C3 | 1.325 (3) | C11—H11C | 0.9600 |
| C3—C4 | 1.472 (3) | C12—H12A | 0.9600 |
| C3—H3 | 0.9300 | C12—H12B | 0.9600 |
| C4—C9 | 1.385 (3) | C12—H12C | 0.9600 |
| C4—C5 | 1.397 (3) | ||
| C10—O1—C9 | 117.36 (18) | C6—C7—H7 | 120.1 |
| C8—O3—C12 | 117.3 (2) | C8—C7—H7 | 120.1 |
| F3—C1—F1 | 107.4 (3) | O3—C8—C7 | 125.8 (2) |
| F3—C1—F2 | 106.7 (3) | O3—C8—C9 | 115.7 (2) |
| F1—C1—F2 | 106.0 (2) | C7—C8—C9 | 118.5 (2) |
| F3—C1—C2 | 113.2 (2) | C4—C9—C8 | 121.9 (2) |
| F1—C1—C2 | 111.7 (3) | C4—C9—O1 | 119.1 (2) |
| F2—C1—C2 | 111.4 (3) | C8—C9—O1 | 118.9 (2) |
| C3—C2—C1 | 122.2 (2) | O2—C10—O1 | 122.5 (2) |
| C3—C2—Cl | 126.0 (2) | O2—C10—C11 | 127.4 (3) |
| C1—C2—Cl | 111.8 (2) | O1—C10—C11 | 110.1 (2) |
| C2—C3—C4 | 128.8 (2) | C10—C11—H11A | 109.5 |
| C2—C3—H3 | 115.6 | C10—C11—H11B | 109.5 |
| C4—C3—H3 | 115.6 | H11A—C11—H11B | 109.5 |
| C9—C4—C5 | 118.3 (2) | C10—C11—H11C | 109.5 |
| C9—C4—C3 | 118.2 (2) | H11A—C11—H11C | 109.5 |
| C5—C4—C3 | 123.4 (2) | H11B—C11—H11C | 109.5 |
| C6—C5—C4 | 119.8 (3) | O3—C12—H12A | 109.5 |
| C6—C5—H5 | 120.1 | O3—C12—H12B | 109.5 |
| C4—C5—H5 | 120.1 | H12A—C12—H12B | 109.5 |
| C5—C6—C7 | 121.7 (3) | O3—C12—H12C | 109.5 |
| C5—C6—H6 | 119.2 | H12A—C12—H12C | 109.5 |
| C7—C6—H6 | 119.2 | H12B—C12—H12C | 109.5 |
| C6—C7—C8 | 119.7 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C6—H6···F1i | 0.93 | 2.64 | 3.508 (3) | 156 |
| C7—H7···O2ii | 0.93 | 2.60 | 3.430 (3) | 149 |
Symmetry codes: (i) x, y, z−1; (ii) −x, −y+1, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZL2108).
References
- Bruker (1998). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2003). SAINT-Plus Bruker AXS, Inc., Madison, Wisconsin, USA.
- Dmowski, W. (1985). J. Fluorine Chem.29, 273–286.
- Fujita, M. & Hiyama, T. (1986). Tetrahedron Lett.27, 3655–3658.
- Nenajdenko, V. G., Varseev, G. N., Shastin, A. V. & Balenkova, E. S. (2005). J. Fluorine Chem.126, 907–913.
- Politzer, P., Lane, P., Concha, M. C., Ma, Y. & Murray, J. S. (2007). J. Mol. Model.13, 305–311. [DOI] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801489X/zl2108sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680801489X/zl2108Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


