Abstract
The title compound, C12H10N4·4H2O, was obtained from a room-temperature solution of o-phenylenediamine and copper acetate. In the crystal structure, there are significant π–π stacking interactions, with a centroid–centroid separation of 3.575 (2) Å. In addition, intermolecular O—H⋯O, N—H⋯O, N—H⋯N and O—H⋯N hydrogen bonds link 2,3-diaminophenazine molecules and water molecules, forming a three-dimensional framework.
Related literature
For related literature, see: Brownstein & Enright (1995 ▶); Doyle et al. (2001 ▶); Chłopek et al. (2005 ▶).
Experimental
Crystal data
C12H10N4·4H2O
M r = 282.30
Orthorhombic,
a = 16.7593 (18) Å
b = 18.1200 (19) Å
c = 4.7834 (5) Å
V = 1452.6 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 293 (2) K
0.37 × 0.32 × 0.23 mm
Data collection
Bruker SMART APEX area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.977
7735 measured reflections
1608 independent reflections
1432 reflections with I > 2σ(I)
R int = 0.022
Refinement
R[F 2 > 2σ(F 2)] = 0.048
wR(F 2) = 0.140
S = 1.14
1608 reflections
225 parameters
17 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.29 e Å−3
Δρmin = −0.12 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808009598/lh2601sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009598/lh2601Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N4—H4B⋯O2Wi | 0.895 (10) | 2.218 (12) | 3.105 (5) | 171 (3) |
| N4—H4C⋯N4ii | 0.90 (3) | 2.58 (3) | 3.198 (3) | 126 (3) |
| N3—H3B⋯O1Wiii | 0.906 (10) | 2.165 (16) | 3.048 (6) | 165 (4) |
| N3—H3C⋯N3ii | 0.895 (11) | 2.33 (2) | 3.122 (4) | 147 (3) |
| O4W—H4WA⋯O4Wiv | 0.855 (19) | 2.017 (19) | 2.871 (3) | 176 (4) |
| O4W—H4WB⋯N2 | 0.867 (17) | 1.924 (19) | 2.787 (3) | 173 (4) |
| O3W—H3WB⋯N1 | 0.872 (19) | 1.96 (3) | 2.801 (3) | 161 (6) |
| O2W—H2WA⋯O4Wv | 0.84 (2) | 2.01 (2) | 2.843 (4) | 178 (5) |
| O1W—H1WA⋯O1Wvi | 0.84 (6) | 2.15 (6) | 2.860 (7) | 142 (6) |
| O2W—H2WB⋯O2Wvii | 0.87 (4) | 1.97 (4) | 2.812 (5) | 161 (3) |
| O1W—H1WB⋯O3W | 0.85 (3) | 2.09 (3) | 2.882 (6) | 155 (5) |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
; (vii)
.
Acknowledgments
The authors thank the Program for Liaoning Excellent Talents in Universities for supporting this work (RC-05-11).
supplementary crystallographic information
Comment
The crystal structures of phenazinediamine (Doyle, et al., 2001) and examples of its derivatives (Brownstein, et al., 1995; Krzysztof, et al., 2005) have been published. As part of our studies of these types of compounds we report here the crystal structure of the title compound (I) which was synthesized at room temperature using o-Phenylenediamine and copper acetate.
In compound (I), the asymmetric unit contains a 2,3-Diamino-phenazine molecule and four water molecules (Fig. 1). In the crystal structure, 2,3-Diamino-phenazine molecules related by unit cell translations along the c axis form moderately strong π···π stacking interactions (Cg1···.Cg2(x, y, -1 + z) and Cg1···Cg3(x, y, 1 + z) = 3.575 (2) Å, where Cg1, Cg2 and Cg3 are the centroids defined by ring atoms N1/N2/C1/C6/C9/C10, C1—C6 and C7—C12, respectively). In addition, water molecules and 2,3-Diamino-phenazine molecules are linked by O—H···N, O—H···O, N—H···N and H—H···O hydrogen bonds to form a three-dimensional network (Table 1 & Fig.2).
Experimental
A mixture of o-Phenylenediamine(0.5 mmol, 0.054 g), Cu(CH3COO)2 (0.5 mmol,0.099 g), NaOH (1 mmol, 0.04 g), and water (10 ml) was placed in a 20 ml vial, stirring in air for 1 h. It was then sealed for 1 week and the resulting black block-shaped single crystals were collected. Yield: 67%. C&H analysis for C12H18N4O4 (found/calc): C, 51.03(51.06), H, 6.39(6.43).
Refinement
In the absence of significant anomalous dispersion effects the Friedel pairs were merged. The H atoms were placed in calculated positions in the riding-model approximation (C—H 0.93 Å, N—H 0.90 Å), with their temperature factors were set to 1.2 times those of the equivalent isotropic temperature factors of the parent atoms. The water H atoms were located in difference Fourier maps and refined isotropically with distance restrains of O—H = 0.85 (2) and H···H = 1.39 (1) Å.
Figures
Fig. 1.
The asymmetric unit of (I).
Fig. 2.
Part of the crystal structure viewed along the c-axis. Dashed lines are drawn between the donor and acceptor atoms of the hydrogen bonds but H atoms are not showm.
Crystal data
| C12H10N4·4H2O | F000 = 600 |
| Mr = 282.30 | Dx = 1.291 Mg m−3 |
| Orthorhombic, Pca21 | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: P 2c -2ac | Cell parameters from 3569 reflections |
| a = 16.7593 (18) Å | θ = 2.7–24.3º |
| b = 18.1200 (19) Å | µ = 0.10 mm−1 |
| c = 4.7834 (5) Å | T = 293 (2) K |
| V = 1452.6 (3) Å3 | Block, black |
| Z = 4 | 0.37 × 0.32 × 0.23 mm |
Data collection
| Bruker SMART APEX area-detector diffractometer | 1608 independent reflections |
| Radiation source: fine-focus sealed tube | 1432 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.022 |
| T = 293(2) K | θmax = 26.0º |
| φ and ω scans | θmin = 1.1º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −20→18 |
| Tmin = 0.965, Tmax = 0.977 | k = −19→22 |
| 7735 measured reflections | l = −5→5 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.048 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.140 | w = 1/[σ2(Fo2) + (0.0963P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.14 | (Δ/σ)max < 0.001 |
| 1608 reflections | Δρmax = 0.29 e Å−3 |
| 225 parameters | Δρmin = −0.12 e Å−3 |
| 17 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.51508 (13) | 0.31719 (12) | 0.3965 (5) | 0.0417 (6) | |
| N2 | 0.51933 (12) | 0.16406 (12) | 0.2821 (6) | 0.0410 (5) | |
| C10 | 0.46946 (14) | 0.20894 (15) | 0.1460 (6) | 0.0393 (6) | |
| C11 | 0.41763 (15) | 0.18021 (16) | −0.0623 (7) | 0.0443 (7) | |
| H11A | 0.4184 | 0.1299 | −0.1008 | 0.053* | |
| C1 | 0.56542 (15) | 0.27142 (16) | 0.5338 (6) | 0.0418 (7) | |
| C12 | 0.36660 (15) | 0.22488 (17) | −0.2076 (6) | 0.0445 (7) | |
| C8 | 0.41408 (16) | 0.33188 (16) | 0.0507 (7) | 0.0456 (7) | |
| H8A | 0.4123 | 0.3823 | 0.0873 | 0.055* | |
| C9 | 0.46739 (15) | 0.28738 (15) | 0.2042 (6) | 0.0394 (6) | |
| N4 | 0.31334 (15) | 0.19700 (17) | −0.3960 (7) | 0.0603 (8) | |
| H4B | 0.3134 (18) | 0.1476 (6) | −0.403 (10) | 0.072* | |
| H4C | 0.2916 (19) | 0.2287 (16) | −0.520 (7) | 0.072* | |
| N3 | 0.30987 (17) | 0.34664 (19) | −0.2858 (6) | 0.0630 (8) | |
| H3B | 0.315 (2) | 0.3961 (7) | −0.263 (12) | 0.076* | |
| H3C | 0.2912 (19) | 0.333 (2) | −0.454 (4) | 0.076* | |
| C5 | 0.62032 (15) | 0.14891 (17) | 0.6301 (7) | 0.0498 (7) | |
| H5A | 0.6222 | 0.0985 | 0.5942 | 0.060* | |
| C6 | 0.56701 (14) | 0.19474 (15) | 0.4760 (6) | 0.0401 (6) | |
| C2 | 0.61674 (16) | 0.30014 (19) | 0.7428 (7) | 0.0512 (8) | |
| H2A | 0.6163 | 0.3504 | 0.7828 | 0.061* | |
| C7 | 0.36499 (15) | 0.30342 (16) | −0.1501 (6) | 0.0446 (7) | |
| C4 | 0.66820 (16) | 0.1785 (2) | 0.8286 (7) | 0.0561 (8) | |
| H4A | 0.7025 | 0.1480 | 0.9289 | 0.067* | |
| C3 | 0.66680 (18) | 0.25428 (18) | 0.8851 (7) | 0.0576 (9) | |
| H3A | 0.7004 | 0.2736 | 1.0213 | 0.069* | |
| O4W | 0.54392 (14) | 0.01642 (12) | 0.1437 (6) | 0.0592 (6) | |
| O3W | 0.53446 (19) | 0.47020 (15) | 0.4439 (8) | 0.0798 (8) | |
| O2W | 0.29410 (18) | 0.02670 (19) | 0.5763 (7) | 0.0818 (8) | |
| O1W | 0.7032 (3) | 0.4897 (3) | 0.3542 (10) | 0.1042 (11) | |
| H4WB | 0.541 (2) | 0.0631 (11) | 0.182 (8) | 0.088 (14)* | |
| H3WB | 0.535 (3) | 0.4238 (14) | 0.396 (16) | 0.16 (3)* | |
| H4WA | 0.516 (2) | 0.0085 (18) | −0.004 (7) | 0.070 (12)* | |
| H3WA | 0.4832 (14) | 0.481 (2) | 0.455 (16) | 0.14 (2)* | |
| H2WA | 0.3416 (11) | 0.014 (2) | 0.601 (11) | 0.102 (16)* | |
| H1WA | 0.723 (3) | 0.469 (4) | 0.495 (12) | 0.22 (4)* | |
| H2WB | 0.266 (2) | 0.016 (2) | 0.724 (8) | 0.093 (16)* | |
| H1WB | 0.6547 (14) | 0.478 (2) | 0.330 (13) | 0.11 (2)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0396 (11) | 0.0510 (12) | 0.0344 (13) | −0.0021 (9) | 0.0026 (10) | −0.0015 (11) |
| N2 | 0.0359 (11) | 0.0526 (12) | 0.0346 (12) | 0.0009 (9) | 0.0026 (11) | −0.0002 (11) |
| C10 | 0.0319 (12) | 0.0550 (14) | 0.0311 (14) | −0.0024 (10) | 0.0056 (12) | 0.0001 (12) |
| C11 | 0.0373 (13) | 0.0571 (15) | 0.0386 (15) | −0.0018 (12) | −0.0006 (13) | −0.0059 (13) |
| C1 | 0.0337 (13) | 0.0606 (16) | 0.0309 (15) | −0.0032 (11) | 0.0033 (11) | 0.0012 (12) |
| C12 | 0.0302 (13) | 0.0741 (18) | 0.0293 (14) | −0.0081 (12) | 0.0057 (11) | −0.0011 (14) |
| C8 | 0.0444 (14) | 0.0551 (14) | 0.0375 (16) | 0.0061 (12) | 0.0035 (13) | 0.0010 (13) |
| C9 | 0.0361 (12) | 0.0509 (14) | 0.0313 (16) | 0.0018 (11) | 0.0035 (11) | −0.0008 (12) |
| N4 | 0.0465 (14) | 0.092 (2) | 0.0428 (16) | −0.0086 (13) | −0.0108 (13) | −0.0011 (17) |
| N3 | 0.0539 (15) | 0.089 (2) | 0.0463 (17) | 0.0191 (14) | −0.0071 (14) | 0.0025 (15) |
| C5 | 0.0394 (13) | 0.0697 (17) | 0.0401 (17) | 0.0079 (12) | 0.0028 (13) | 0.0071 (16) |
| C6 | 0.0303 (12) | 0.0586 (15) | 0.0315 (15) | −0.0004 (10) | 0.0021 (12) | 0.0022 (13) |
| C2 | 0.0423 (15) | 0.0733 (18) | 0.0379 (17) | −0.0112 (13) | 0.0007 (13) | −0.0048 (16) |
| C7 | 0.0357 (13) | 0.0699 (18) | 0.0282 (15) | 0.0063 (12) | 0.0034 (12) | 0.0024 (13) |
| C4 | 0.0358 (14) | 0.090 (2) | 0.0421 (18) | 0.0057 (15) | −0.0020 (13) | 0.0131 (17) |
| C3 | 0.0379 (15) | 0.098 (3) | 0.0366 (16) | −0.0096 (15) | −0.0058 (14) | 0.0019 (17) |
| O4W | 0.0671 (14) | 0.0536 (12) | 0.0569 (15) | 0.0009 (10) | −0.0081 (13) | 0.0014 (12) |
| O3W | 0.103 (2) | 0.0588 (14) | 0.078 (2) | −0.0099 (13) | −0.003 (2) | −0.0042 (14) |
| O2W | 0.0642 (17) | 0.118 (2) | 0.0636 (18) | 0.0089 (16) | −0.0007 (16) | 0.0027 (17) |
| O1W | 0.097 (2) | 0.123 (3) | 0.092 (3) | −0.006 (2) | 0.007 (2) | 0.011 (2) |
Geometric parameters (Å, °)
| N1—C9 | 1.333 (3) | N3—H3B | 0.906 (10) |
| N1—C1 | 1.353 (3) | N3—H3C | 0.895 (11) |
| N2—C10 | 1.335 (3) | C5—C4 | 1.353 (5) |
| N2—C6 | 1.345 (4) | C5—C6 | 1.425 (4) |
| C10—C11 | 1.421 (4) | C5—H5A | 0.9300 |
| C10—C9 | 1.449 (4) | C2—C3 | 1.363 (4) |
| C11—C12 | 1.367 (4) | C2—H2A | 0.9300 |
| C11—H11A | 0.9300 | C4—C3 | 1.400 (4) |
| C1—C6 | 1.417 (4) | C4—H4A | 0.9300 |
| C1—C2 | 1.417 (4) | C3—H3A | 0.9300 |
| C12—N4 | 1.366 (4) | O4W—H4WB | 0.867 (17) |
| C12—C7 | 1.450 (4) | O4W—H4WA | 0.855 (19) |
| C8—C7 | 1.366 (4) | O3W—H3WB | 0.872 (19) |
| C8—C9 | 1.410 (4) | O3W—H3WA | 0.883 (19) |
| C8—H8A | 0.9300 | O2W—H2WA | 0.837 (19) |
| N4—H4B | 0.895 (10) | O2W—H2WB | 0.87 (4) |
| N4—H4C | 0.90 (3) | O1W—H1WA | 0.84 (6) |
| N3—C7 | 1.374 (4) | O1W—H1WB | 0.849 (18) |
| C9—N1—C1 | 117.4 (2) | C7—N3—H3C | 120 (3) |
| C10—N2—C6 | 117.2 (2) | H3B—N3—H3C | 114 (4) |
| N2—C10—C11 | 120.1 (2) | C4—C5—C6 | 120.3 (3) |
| N2—C10—C9 | 121.2 (2) | C4—C5—H5A | 119.9 |
| C11—C10—C9 | 118.7 (2) | C6—C5—H5A | 119.9 |
| C12—C11—C10 | 121.5 (3) | N2—C6—C1 | 121.9 (2) |
| C12—C11—H11A | 119.3 | N2—C6—C5 | 119.2 (3) |
| C10—C11—H11A | 119.3 | C1—C6—C5 | 118.8 (2) |
| N1—C1—C6 | 121.2 (2) | C3—C2—C1 | 120.1 (3) |
| N1—C1—C2 | 119.7 (3) | C3—C2—H2A | 119.9 |
| C6—C1—C2 | 119.1 (3) | C1—C2—H2A | 119.9 |
| N4—C12—C11 | 121.7 (3) | C8—C7—N3 | 121.5 (3) |
| N4—C12—C7 | 118.4 (3) | C8—C7—C12 | 119.5 (3) |
| C11—C12—C7 | 119.8 (3) | N3—C7—C12 | 118.9 (3) |
| C7—C8—C9 | 122.2 (3) | C5—C4—C3 | 120.9 (3) |
| C7—C8—H8A | 118.9 | C5—C4—H4A | 119.6 |
| C9—C8—H8A | 118.9 | C3—C4—H4A | 119.6 |
| N1—C9—C8 | 120.5 (3) | C2—C3—C4 | 120.8 (3) |
| N1—C9—C10 | 121.1 (2) | C2—C3—H3A | 119.6 |
| C8—C9—C10 | 118.4 (2) | C4—C3—H3A | 119.6 |
| C12—N4—H4B | 113 (3) | H4WB—O4W—H4WA | 108 (2) |
| C12—N4—H4C | 118 (2) | H3WB—O3W—H3WA | 105 (2) |
| H4B—N4—H4C | 128 (4) | H2WA—O2W—H2WB | 109 (2) |
| C7—N3—H3B | 117 (3) | H1WA—O1W—H1WB | 112 (3) |
| C6—N2—C10—C11 | 179.8 (2) | N1—C1—C6—N2 | 0.5 (4) |
| C6—N2—C10—C9 | 0.4 (4) | C2—C1—C6—N2 | 179.4 (3) |
| N2—C10—C11—C12 | −179.2 (2) | N1—C1—C6—C5 | −179.0 (3) |
| C9—C10—C11—C12 | 0.2 (4) | C2—C1—C6—C5 | 0.0 (4) |
| C9—N1—C1—C6 | −0.3 (4) | C4—C5—C6—N2 | −179.2 (3) |
| C9—N1—C1—C2 | −179.2 (2) | C4—C5—C6—C1 | 0.2 (4) |
| C10—C11—C12—N4 | −176.0 (3) | N1—C1—C2—C3 | 179.0 (3) |
| C10—C11—C12—C7 | 0.2 (4) | C6—C1—C2—C3 | 0.0 (4) |
| C1—N1—C9—C8 | −179.3 (2) | C9—C8—C7—N3 | 175.9 (3) |
| C1—N1—C9—C10 | 0.2 (4) | C9—C8—C7—C12 | 0.6 (4) |
| C7—C8—C9—N1 | 179.2 (2) | N4—C12—C7—C8 | 175.8 (3) |
| C7—C8—C9—C10 | −0.2 (4) | C11—C12—C7—C8 | −0.6 (4) |
| N2—C10—C9—N1 | −0.3 (3) | N4—C12—C7—N3 | 0.4 (4) |
| C11—C10—C9—N1 | −179.6 (3) | C11—C12—C7—N3 | −176.0 (3) |
| N2—C10—C9—C8 | 179.2 (3) | C6—C5—C4—C3 | −0.5 (4) |
| C11—C10—C9—C8 | −0.2 (3) | C1—C2—C3—C4 | −0.3 (5) |
| C10—N2—C6—C1 | −0.5 (4) | C5—C4—C3—C2 | 0.5 (5) |
| C10—N2—C6—C5 | 179.0 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N4—H4B···O2Wi | 0.895 (10) | 2.218 (12) | 3.105 (5) | 171 (3) |
| N4—H4C···N4ii | 0.90 (3) | 2.58 (3) | 3.198 (3) | 126 (3) |
| N3—H3B···O1Wiii | 0.906 (10) | 2.165 (16) | 3.048 (6) | 165 (4) |
| N3—H3C···N3ii | 0.895 (11) | 2.33 (2) | 3.122 (4) | 147 (3) |
| O4W—H4WA···O4Wiv | 0.855 (19) | 2.017 (19) | 2.871 (3) | 176 (4) |
| O4W—H4WB···N2 | 0.867 (17) | 1.924 (19) | 2.787 (3) | 173 (4) |
| O3W—H3WB···N1 | 0.872 (19) | 1.96 (3) | 2.801 (3) | 161 (6) |
| O2W—H2WA···O4Wv | 0.84 (2) | 2.01 (2) | 2.843 (4) | 178 (5) |
| O1W—H1WA···O1Wvi | 0.84 (6) | 2.15 (6) | 2.860 (7) | 142 (6) |
| O2W—H2WB···O2Wvii | 0.87 (4) | 1.97 (4) | 2.812 (5) | 161 (3) |
| O1W—H1WB···O3W | 0.85 (3) | 2.09 (3) | 2.882 (6) | 155 (5) |
Symmetry codes: (i) x, y, z−1; (ii) −x+1/2, y, z−1/2; (iii) −x+1, −y+1, z−1/2; (iv) −x+1, −y, z−1/2; (v) −x+1, −y, z+1/2; (vi) −x+3/2, y, z+1/2; (vii) −x+1/2, y, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2601).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808009598/lh2601sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009598/lh2601Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


