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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jun 7;64(Pt 7):o1185. doi: 10.1107/S1600536808015638

A new polymorph of dimesitylborinic acid

Matthias Kuhlmann a, Thomas Baumgartner a, Masood Parvez a,*
PMCID: PMC2961869  PMID: 21202827

Abstract

A new polymorph of dimesitylborinic acid (or hydroxy­dimesitylborane), C18H23BO, showcasing different crystal packing and symmetry, complements the previously reported polymorph [Weese, Bartlett, Murray, Olmstead & Power (1987). Inorg. Chem. 26, 2409–2413; Entwistle, Batsanov & Marder (2007). Acta Cryst. E63, o2639–o2641]. The structure of the title compound contains only one mol­ecule in the asymmetric unit, and no O—H⋯O inter­actions are observed. However, mol­ecules are linked by weak inter­molecuar O—H⋯π(arene) inter­actions to form centrosymmetric dimers.

Related literature

For related literature, see: Cornet et al. (2003); Entwistle et al. (2007); Fraenk et al. (2001); Kuhlmann et al. (2008); Weese et al. (1987).graphic file with name e-64-o1185-scheme1.jpg

Experimental

Crystal data

  • C18H23BO

  • M r = 266.17

  • Monoclinic, Inline graphic

  • a = 8.942 (4) Å

  • b = 8.801 (2) Å

  • c = 19.947 (8) Å

  • β = 97.800 (16)°

  • V = 1555.3 (10) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.07 mm−1

  • T = 173 (2) K

  • 0.32 × 0.24 × 0.12 mm

Data collection

  • Nonius KappaCCD diffractometer

  • Absorption correction: multi-scan (SORTAV; Blessing, 1997) T min = 0.979, T max = 0.992

  • 6119 measured reflections

  • 3542 independent reflections

  • 2728 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.134

  • S = 0.91

  • 3542 reflections

  • 188 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.26 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski & Minor, 1997); data reduction: SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808015638/om2237sup1.cif

e-64-o1185-sup1.cif (20.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015638/om2237Isup2.hkl

e-64-o1185-Isup2.hkl (170.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the C11–C16 phenyl ring.

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯Cgi 0.84 (2) 2.83 (2) 3.523 (2) 141 (2)

Symmetry code: (i) Inline graphic.

supplementary crystallographic information

Comment

In the course of our studies on the synthesis and photophysical properties of boron-functionalized dithieno[3,2-b;2',3'-d]phospholes (Kuhlmann et al., 2008), we obtained a new polymorph of the title compound. It crystallizes in space group P21/c, which is distinct from the previously reported space group C2/c (Weese et al., 1987; Entwistle et al., 2007).

The structure is composed of unique molecules (Fig. 1) separated by normal van der Waals distances. The mean planes of the phenyl rings are inclined at approximately right angles (86.09 (4)°) with respect to each other. The structure is devoid of any classical hydrogen bonding despite the presence of a hydroxyl group. The previously reported polymorph crystallized as tetramers due to hydrogen bonding involving the OH groups (Weese et al., 1987). There are no indications of π-π stacking interactions between the phenyl groups of the symmetry related molecules in the title compound. However, the hydroxyl group is oriented towards a phenyl ring (C11-C16), thus linking the molecules by rather weak intermolecular O—H···π(arene) interactions to form centrosymmetric dimers about inversion centers (Fig. 2). The boron centers are planar with C2—B1—C11 angle 123.21 (12)°, compared to a wider corresponding angle of 126.0 (4)° reported in the other polymorph (Weese et al., 1987). The structures of trifluoromethyl analogues have also been reported, and they exhibit a similar molecular conformation (Fraenk et al., 2001; Cornet et al., 2003).

Experimental

The title compound was obtained as hydrolysis by-product in the synthesis of 2-(dimetsitylboryl)-5-phenyl-dithieno[3,2 - b;2',3'-d]phosphole, during the recrystallization of the sample from a concentrated pentane solution at 277 K.

Refinement

The H-atoms bonded to C9 and C18 were disordered into two sets of methyl groups; the HFIX 123 command in SHELXTL (Sheldrick, 2008) was used to model these methyl groups. H-atoms bonded to C-atoms were included at geometrically idealized positions and refined in the riding-model approximation with the following constraints: C—H distances were set to 0.95 Å (aryl) and 0.98 Å (methyl) with Uiso(H) = 1.2Ueq(C). The position of the H-atom bonded to O1 was determined from a difference map and was allowed to refine with Uiso = 1.2 times Ueq of O1.

Figures

Fig. 1.

Fig. 1.

A view of the title compound with displacement ellipsoids plotted at the 50% probability level. Only three H atoms on C9 and C18 are shown.

Fig. 2.

Fig. 2.

Unit cell packing as viewed down the b direction showing intermolecular O—H···π(arene) interactions with dashed lines.

Crystal data

C18H23BO F000 = 576
Mr = 266.17 Dx = 1.137 Mg m3
Monoclinic, P21/c Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6119 reflections
a = 8.942 (4) Å θ = 3.3–27.5º
b = 8.801 (2) Å µ = 0.07 mm1
c = 19.947 (8) Å T = 173 (2) K
β = 97.800 (16)º Block, yellow
V = 1555.3 (10) Å3 0.32 × 0.24 × 0.12 mm
Z = 4

Data collection

Nonius KappaCCD diffractometer 3542 independent reflections
Radiation source: fine-focus sealed tube 2728 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.023
T = 173(2) K θmax = 27.5º
ω and φ scans θmin = 3.3º
Absorption correction: multi-scan(SORTAV; Blessing, 1997) h = −11→11
Tmin = 0.979, Tmax = 0.992 k = −11→11
6119 measured reflections l = −25→25

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134   w = 1/[σ2(Fo2) + (0.072P)2 + 0.71P] where P = (Fo2 + 2Fc2)/3
S = 0.91 (Δ/σ)max < 0.001
3542 reflections Δρmax = 0.26 e Å3
188 parameters Δρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
O1 0.11790 (13) −0.31566 (13) −0.00945 (5) 0.0401 (3)
H1 0.076 (2) −0.251 (2) −0.0366 (10) 0.048*
B1 0.08930 (17) −0.28800 (17) 0.05445 (8) 0.0269 (3)
C2 0.17055 (15) −0.39649 (14) 0.11108 (6) 0.0255 (3)
C3 0.32785 (15) −0.42311 (15) 0.11607 (7) 0.0278 (3)
C4 0.39909 (15) −0.51699 (15) 0.16679 (7) 0.0309 (3)
H4 0.5049 −0.5324 0.1698 0.037*
C5 0.32018 (16) −0.58890 (15) 0.21314 (7) 0.0316 (3)
C6 0.16562 (16) −0.56426 (15) 0.20763 (7) 0.0310 (3)
H6 0.1095 −0.6138 0.2384 0.037*
C7 0.09009 (15) −0.46888 (15) 0.15823 (7) 0.0276 (3)
C8 0.42383 (17) −0.35135 (18) 0.06779 (8) 0.0374 (4)
H8A 0.5308 −0.3633 0.0857 0.045*
H8B 0.3995 −0.2430 0.0628 0.045*
H8C 0.4034 −0.4013 0.0236 0.045*
C9 0.3997 (2) −0.68880 (19) 0.26809 (8) 0.0446 (4)
H9A 0.5077 −0.6926 0.2641 0.067* 0.50
H9B 0.3574 −0.7916 0.2636 0.067* 0.50
H9C 0.3858 −0.6472 0.3124 0.067* 0.50
H9D 0.3262 −0.7283 0.2960 0.067* 0.50
H9E 0.4765 −0.6294 0.2965 0.067* 0.50
H9F 0.4481 −0.7737 0.2476 0.067* 0.50
C10 −0.07788 (16) −0.44837 (18) 0.15670 (8) 0.0364 (3)
H10A −0.1137 −0.5144 0.1907 0.044*
H10B −0.1295 −0.4752 0.1117 0.044*
H10C −0.0995 −0.3422 0.1666 0.044*
C11 −0.02005 (15) −0.15448 (14) 0.06966 (7) 0.0265 (3)
C12 −0.17091 (15) −0.15062 (15) 0.03816 (7) 0.0286 (3)
C13 −0.27017 (16) −0.04211 (16) 0.05784 (7) 0.0320 (3)
H13 −0.3721 −0.0420 0.0369 0.038*
C14 −0.22404 (17) 0.06574 (16) 0.10723 (7) 0.0337 (3)
C15 −0.07360 (17) 0.06623 (15) 0.13554 (7) 0.0330 (3)
H15 −0.0392 0.1424 0.1677 0.040*
C16 0.02899 (16) −0.04183 (15) 0.11824 (7) 0.0292 (3)
C17 −0.23031 (17) −0.26522 (18) −0.01535 (8) 0.0367 (3)
H17A −0.3408 −0.2611 −0.0228 0.044*
H17B −0.1976 −0.3674 −0.0002 0.044*
H17C −0.1910 −0.2415 −0.0577 0.044*
C18 −0.3345 (2) 0.17870 (19) 0.12935 (10) 0.0471 (4)
H18A −0.4347 0.1610 0.1040 0.071* 0.50
H18B −0.3013 0.2821 0.1206 0.071* 0.50
H18C −0.3392 0.1664 0.1778 0.071* 0.50
H18D −0.2821 0.2453 0.1643 0.071* 0.50
H18E −0.4155 0.1242 0.1477 0.071* 0.50
H18F −0.3776 0.2399 0.0904 0.071* 0.50
C19 0.18953 (18) −0.03689 (18) 0.15248 (8) 0.0405 (4)
H19A 0.2080 0.0600 0.1763 0.049*
H19B 0.2584 −0.0468 0.1185 0.049*
H19C 0.2068 −0.1207 0.1850 0.049*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0500 (7) 0.0443 (6) 0.0276 (5) 0.0133 (5) 0.0115 (5) 0.0046 (4)
B1 0.0270 (7) 0.0273 (7) 0.0274 (8) −0.0023 (6) 0.0068 (6) −0.0004 (6)
C2 0.0284 (7) 0.0225 (6) 0.0259 (6) 0.0005 (5) 0.0056 (5) −0.0035 (5)
C3 0.0298 (7) 0.0247 (6) 0.0298 (7) −0.0015 (5) 0.0066 (5) −0.0061 (5)
C4 0.0276 (7) 0.0282 (7) 0.0359 (8) 0.0022 (5) 0.0012 (6) −0.0078 (5)
C5 0.0378 (8) 0.0267 (7) 0.0286 (7) 0.0017 (6) −0.0012 (6) −0.0035 (5)
C6 0.0381 (8) 0.0282 (7) 0.0270 (7) −0.0007 (6) 0.0059 (6) 0.0002 (5)
C7 0.0309 (7) 0.0264 (6) 0.0260 (6) 0.0010 (5) 0.0060 (5) −0.0030 (5)
C8 0.0321 (7) 0.0411 (8) 0.0409 (8) −0.0018 (6) 0.0119 (6) −0.0009 (6)
C9 0.0470 (9) 0.0417 (9) 0.0418 (9) 0.0063 (7) −0.0054 (7) 0.0067 (7)
C10 0.0331 (8) 0.0413 (8) 0.0368 (8) 0.0021 (6) 0.0124 (6) 0.0079 (6)
C11 0.0302 (7) 0.0247 (6) 0.0251 (6) 0.0009 (5) 0.0055 (5) 0.0032 (5)
C12 0.0308 (7) 0.0260 (6) 0.0290 (7) −0.0008 (5) 0.0042 (5) 0.0032 (5)
C13 0.0289 (7) 0.0315 (7) 0.0358 (8) 0.0019 (5) 0.0048 (6) 0.0051 (6)
C14 0.0380 (8) 0.0271 (7) 0.0380 (8) 0.0059 (6) 0.0122 (6) 0.0043 (6)
C15 0.0431 (8) 0.0249 (7) 0.0313 (7) 0.0009 (6) 0.0057 (6) −0.0032 (5)
C16 0.0341 (7) 0.0255 (6) 0.0278 (7) 0.0004 (5) 0.0032 (6) 0.0029 (5)
C17 0.0350 (8) 0.0383 (8) 0.0360 (8) −0.0045 (6) 0.0012 (6) −0.0047 (6)
C18 0.0457 (9) 0.0391 (9) 0.0590 (11) 0.0129 (7) 0.0168 (8) −0.0020 (7)
C19 0.0391 (8) 0.0373 (8) 0.0424 (8) 0.0021 (6) −0.0044 (7) −0.0085 (7)

Geometric parameters (Å, °)

O1—B1 1.3556 (19) C10—H10B 0.9800
O1—H1 0.84 (2) C10—H10C 0.9800
B1—C2 1.579 (2) C11—C12 1.409 (2)
B1—C11 1.584 (2) C11—C16 1.4139 (19)
C2—C7 1.4113 (19) C12—C13 1.3958 (19)
C2—C3 1.4161 (19) C12—C17 1.512 (2)
C3—C4 1.3918 (19) C13—C14 1.390 (2)
C3—C8 1.512 (2) C13—H13 0.9500
C4—C5 1.389 (2) C14—C15 1.386 (2)
C4—H4 0.9500 C14—C18 1.509 (2)
C5—C6 1.388 (2) C15—C16 1.397 (2)
C5—C9 1.506 (2) C15—H15 0.9500
C6—C7 1.3968 (19) C16—C19 1.504 (2)
C6—H6 0.9500 C17—H17A 0.9800
C7—C10 1.509 (2) C17—H17B 0.9800
C8—H8A 0.9800 C17—H17C 0.9800
C8—H8B 0.9800 C18—H18A 0.9800
C8—H8C 0.9800 C18—H18B 0.9800
C9—H9A 0.9800 C18—H18C 0.9800
C9—H9B 0.9800 C18—H18D 0.9800
C9—H9C 0.9800 C18—H18E 0.9800
C9—H9D 0.9800 C18—H18F 0.9800
C9—H9E 0.9800 C19—H19A 0.9800
C9—H9F 0.9800 C19—H19B 0.9800
C10—H10A 0.9800 C19—H19C 0.9800
B1—O1—H1 111.0 (13) H10A—C10—H10C 109.5
O1—B1—C2 115.90 (12) H10B—C10—H10C 109.5
O1—B1—C11 120.89 (12) C12—C11—C16 118.54 (12)
C2—B1—C11 123.21 (12) C12—C11—B1 120.73 (12)
C7—C2—C3 118.02 (12) C16—C11—B1 120.62 (12)
C7—C2—B1 121.54 (12) C13—C12—C11 119.86 (13)
C3—C2—B1 120.43 (12) C13—C12—C17 118.63 (13)
C4—C3—C2 120.10 (12) C11—C12—C17 121.47 (12)
C4—C3—C8 117.87 (13) C14—C13—C12 121.86 (13)
C2—C3—C8 122.03 (13) C14—C13—H13 119.1
C5—C4—C3 122.04 (13) C12—C13—H13 119.1
C5—C4—H4 119.0 C15—C14—C13 117.97 (13)
C3—C4—H4 119.0 C15—C14—C18 121.08 (14)
C6—C5—C4 117.78 (13) C13—C14—C18 120.95 (14)
C6—C5—C9 121.02 (13) C14—C15—C16 122.05 (13)
C4—C5—C9 121.20 (14) C14—C15—H15 119.0
C5—C6—C7 122.04 (13) C16—C15—H15 119.0
C5—C6—H6 119.0 C15—C16—C11 119.59 (13)
C7—C6—H6 119.0 C15—C16—C19 119.10 (13)
C6—C7—C2 120.00 (13) C11—C16—C19 121.30 (12)
C6—C7—C10 118.09 (12) C12—C17—H17A 109.5
C2—C7—C10 121.91 (12) C12—C17—H17B 109.5
C3—C8—H8A 109.5 H17A—C17—H17B 109.5
C3—C8—H8B 109.5 C12—C17—H17C 109.5
H8A—C8—H8B 109.5 H17A—C17—H17C 109.5
C3—C8—H8C 109.5 H17B—C17—H17C 109.5
H8A—C8—H8C 109.5 C14—C18—H18A 109.5
H8B—C8—H8C 109.5 C14—C18—H18B 109.5
C5—C9—H9A 109.5 H18A—C18—H18B 109.5
C5—C9—H9B 109.5 C14—C18—H18C 109.5
H9A—C9—H9B 109.5 H18A—C18—H18C 109.5
C5—C9—H9C 109.5 H18B—C18—H18C 109.5
H9A—C9—H9C 109.5 C14—C18—H18D 109.5
H9B—C9—H9C 109.5 H18A—C18—H18D 141.1
C5—C9—H9D 109.5 H18B—C18—H18D 56.3
H9A—C9—H9D 141.1 H18C—C18—H18D 56.3
H9B—C9—H9D 56.3 C14—C18—H18E 109.5
H9C—C9—H9D 56.3 H18A—C18—H18E 56.3
C5—C9—H9E 109.5 H18B—C18—H18E 141.1
H9A—C9—H9E 56.3 H18C—C18—H18E 56.3
H9B—C9—H9E 141.1 H18D—C18—H18E 109.5
H9C—C9—H9E 56.3 C14—C18—H18F 109.5
H9D—C9—H9E 109.5 H18A—C18—H18F 56.3
C5—C9—H9F 109.5 H18B—C18—H18F 56.3
H9A—C9—H9F 56.3 H18C—C18—H18F 141.1
H9B—C9—H9F 56.3 H18D—C18—H18F 109.5
H9C—C9—H9F 141.1 H18E—C18—H18F 109.5
H9D—C9—H9F 109.5 C16—C19—H19A 109.5
H9E—C9—H9F 109.5 C16—C19—H19B 109.5
C7—C10—H10A 109.5 H19A—C19—H19B 109.5
C7—C10—H10B 109.5 C16—C19—H19C 109.5
H10A—C10—H10B 109.5 H19A—C19—H19C 109.5
C7—C10—H10C 109.5 H19B—C19—H19C 109.5
O1—B1—C2—C7 −130.25 (14) O1—B1—C11—C12 58.47 (18)
C11—B1—C2—C7 49.51 (18) C2—B1—C11—C12 −121.28 (14)
O1—B1—C2—C3 50.12 (18) O1—B1—C11—C16 −125.45 (15)
C11—B1—C2—C3 −130.12 (14) C2—B1—C11—C16 54.80 (18)
C7—C2—C3—C4 −0.66 (18) C16—C11—C12—C13 −3.41 (19)
B1—C2—C3—C4 178.98 (12) B1—C11—C12—C13 172.75 (12)
C7—C2—C3—C8 179.76 (12) C16—C11—C12—C17 178.63 (13)
B1—C2—C3—C8 −0.60 (19) B1—C11—C12—C17 −5.21 (19)
C2—C3—C4—C5 0.9 (2) C11—C12—C13—C14 1.3 (2)
C8—C3—C4—C5 −179.46 (13) C17—C12—C13—C14 179.29 (13)
C3—C4—C5—C6 −0.1 (2) C12—C13—C14—C15 2.0 (2)
C3—C4—C5—C9 −179.37 (13) C12—C13—C14—C18 −177.96 (14)
C4—C5—C6—C7 −1.0 (2) C13—C14—C15—C16 −3.1 (2)
C9—C5—C6—C7 178.25 (13) C18—C14—C15—C16 176.82 (14)
C5—C6—C7—C2 1.3 (2) C14—C15—C16—C11 1.0 (2)
C5—C6—C7—C10 −179.50 (13) C14—C15—C16—C19 −178.29 (14)
C3—C2—C7—C6 −0.42 (18) C12—C11—C16—C15 2.32 (19)
B1—C2—C7—C6 179.94 (12) B1—C11—C16—C15 −173.84 (12)
C3—C2—C7—C10 −179.59 (12) C12—C11—C16—C19 −178.42 (13)
B1—C2—C7—C10 0.77 (19) B1—C11—C16—C19 5.4 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1···Cgi 0.84 (2) 2.83 (2) 3.523 (2) 141 (2)

Symmetry codes: (i) −x, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: OM2237).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808015638/om2237sup1.cif

e-64-o1185-sup1.cif (20.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015638/om2237Isup2.hkl

e-64-o1185-Isup2.hkl (170.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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