Abstract
The planar molecules of the title compound, C9H11N3O2S, are linked into a supramolecualr chain via O—H⋯S hydrogen bonds. These chains are connected into a two-dimensional array via N—H⋯O hydrogen bonds; an intramolecular O—H⋯N hydrogen bond is also present.
Related literature
For the medicinal activity of 2,5-dihydroxybenzaldehyde thiosemicarbazone, see: Libermann et al. (1953 ▶); Taniyama & Tanaka (1965 ▶); Xue et al. (2007 ▶). For the structure of 2-hydroxybenzaldehyde 4-methylthiosemicarbazone, see: Vrdoljak et al. (2005 ▶). For the structure of 3,4-dihydroxybenzaldehyde 4-ethylthiosemicarbazone, see: Kayed et al. (2008 ▶).
Experimental
Crystal data
C9H11N3O2S
M r = 225.27
Triclinic,
a = 5.9932 (4) Å
b = 8.5207 (6) Å
c = 10.3272 (6) Å
α = 78.552 (4)°
β = 74.181 (4)°
γ = 81.743 (4)°
V = 495.06 (6) Å3
Z = 2
Mo Kα radiation
μ = 0.31 mm−1
T = 100 (2) K
0.24 × 0.16 × 0.02 mm
Data collection
Bruker SMART APEX diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.929, T max = 0.994
4189 measured reflections
2258 independent reflections
1580 reflections with I > 2σ(I)
R int = 0.050
Refinement
R[F 2 > 2σ(F 2)] = 0.054
wR(F 2) = 0.123
S = 1.03
2258 reflections
153 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.32 e Å−3
Δρmin = −0.47 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808018801/tk2278sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018801/tk2278Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1o⋯N3 | 0.84 (3) | 1.97 (2) | 2.698 (3) | 144 (3) |
| O2—H2o⋯S1i | 0.84 (3) | 2.46 (2) | 3.182 (2) | 144 (3) |
| N2—H2n⋯O1ii | 0.84 (3) | 2.47 (3) | 3.111 (3) | 134 (3) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
We thank the University of Malaya (P0265/2007 A) for supporting this study. KWT thanks the Ministry of Higher Education for a SLAI scholarship.
supplementary crystallographic information
Comment
The title compound (I, Fig. 1) possesses useful medicinal properties (Libermann et al., 1953; Taniyama & Tanaka, 1965; Xue et al., 2007). The molecules are linked into supramolecular chains by O-H···S hydrogen bonds involving the O2-hydroxy group, Table 1. The hydrogen-bonded chains are consolidated into a layer motif via N-NH···O hydrogen bond, involving the O1-hydroxy group. An intramolecular N-H···O hydrogen bond, also involving the O1-hydroxy group is also noted. In contrast, 2-hydroxybenzaldehyde 4-methylthiosemicarbazone, which features an intramolecular O–H···N hydrogen bond, adopts a chain structure (Vrdoljak et al., 2005) as it lacks a second hydroxy substituent for layer formation.
Experimental
4-Methylthiosemicarbazide (0.11 g, 1 mmol) and 2,5-dihydroxybenzaldehyde (0.14 g, 1 mmol) were heated in ethanol (10 ml) for 1 h. Slow evaporation of the solvent yielded yellow crystals of (I).
Refinement
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.98 Å) and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2-1.5 Ueq(C). The hydroxy and amino H-atoms were located in a difference Fourier map, and were refined isotropically with distance restraints of O–H, N–H = 0.85±0.01 Å.
Figures
Fig. 1.
Thermal ellipsoid plot of (I) at the 70% probability level showing atom labeling. Hydrogen atoms are drawn as spheres of arbitrary radii.
Crystal data
| C9H11N3O2S | Z = 2 |
| Mr = 225.27 | F000 = 236 |
| Triclinic, P1 | Dx = 1.511 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
| a = 5.9932 (4) Å | Cell parameters from 558 reflections |
| b = 8.5207 (6) Å | θ = 2.9–23.0º |
| c = 10.3272 (6) Å | µ = 0.31 mm−1 |
| α = 78.552 (4)º | T = 100 (2) K |
| β = 74.181 (4)º | Plate, yellow |
| γ = 81.743 (4)º | 0.24 × 0.16 × 0.02 mm |
| V = 495.06 (6) Å3 |
Data collection
| Bruker SMART APEX diffractometer | 2258 independent reflections |
| Radiation source: fine-focus sealed tube | 1580 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.050 |
| T = 100(2) K | θmax = 27.5º |
| ω scans | θmin = 2.5º |
| Absorption correction: Multi-scan(SADABS; Sheldrick, 1996) | h = −7→7 |
| Tmin = 0.929, Tmax = 0.994 | k = −11→8 |
| 4189 measured reflections | l = −13→13 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.054 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0471P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max = 0.001 |
| 2258 reflections | Δρmax = 0.32 e Å−3 |
| 153 parameters | Δρmin = −0.47 e Å−3 |
| 4 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.44298 (12) | 0.47335 (9) | 0.72966 (7) | 0.0189 (2) | |
| O1 | 1.3132 (3) | 0.8655 (2) | 0.47568 (18) | 0.0188 (4) | |
| O2 | 1.2446 (3) | 1.1893 (2) | −0.03406 (18) | 0.0200 (5) | |
| N1 | 0.8637 (4) | 0.5405 (3) | 0.7312 (2) | 0.0147 (5) | |
| N2 | 0.7415 (4) | 0.6387 (3) | 0.5359 (2) | 0.0159 (5) | |
| N3 | 0.9289 (4) | 0.7298 (3) | 0.4833 (2) | 0.0145 (5) | |
| C1 | 0.8391 (5) | 0.4576 (3) | 0.8709 (2) | 0.0188 (6) | |
| H1A | 0.9802 | 0.4633 | 0.8996 | 0.028* | |
| H1B | 0.8160 | 0.3447 | 0.8763 | 0.028* | |
| H1C | 0.7044 | 0.5088 | 0.9310 | 0.028* | |
| C2 | 0.7001 (4) | 0.5552 (3) | 0.6642 (2) | 0.0134 (6) | |
| C3 | 0.9368 (4) | 0.8121 (3) | 0.3637 (2) | 0.0136 (6) | |
| H3 | 0.8213 | 0.8018 | 0.3194 | 0.016* | |
| C4 | 1.1147 (4) | 0.9200 (3) | 0.2937 (2) | 0.0133 (6) | |
| C5 | 1.2915 (4) | 0.9450 (3) | 0.3503 (2) | 0.0140 (6) | |
| C6 | 1.4505 (5) | 1.0551 (3) | 0.2796 (2) | 0.0157 (6) | |
| H6 | 1.5673 | 1.0745 | 0.3193 | 0.019* | |
| C7 | 1.4389 (5) | 1.1372 (3) | 0.1504 (3) | 0.0153 (6) | |
| H7 | 1.5496 | 1.2111 | 0.1016 | 0.018* | |
| C8 | 1.2669 (4) | 1.1117 (3) | 0.0929 (2) | 0.0149 (6) | |
| C9 | 1.1055 (4) | 1.0049 (3) | 0.1638 (2) | 0.0146 (6) | |
| H9 | 0.9866 | 0.9887 | 0.1243 | 0.018* | |
| H1o | 1.206 (4) | 0.805 (3) | 0.511 (3) | 0.048 (12)* | |
| H2o | 1.352 (5) | 1.245 (4) | −0.082 (3) | 0.059 (13)* | |
| H1n | 0.988 (3) | 0.581 (4) | 0.689 (3) | 0.032 (9)* | |
| H2n | 0.640 (4) | 0.656 (4) | 0.491 (3) | 0.042 (10)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0149 (4) | 0.0241 (4) | 0.0175 (3) | −0.0083 (3) | −0.0051 (3) | 0.0033 (3) |
| O1 | 0.0222 (11) | 0.0221 (12) | 0.0140 (9) | −0.0081 (9) | −0.0089 (8) | 0.0025 (8) |
| O2 | 0.0244 (11) | 0.0202 (12) | 0.0149 (9) | −0.0088 (9) | −0.0059 (8) | 0.0047 (8) |
| N1 | 0.0114 (12) | 0.0181 (13) | 0.0148 (11) | −0.0035 (10) | −0.0038 (9) | −0.0007 (9) |
| N2 | 0.0153 (12) | 0.0168 (13) | 0.0158 (11) | −0.0060 (10) | −0.0056 (9) | 0.0024 (9) |
| N3 | 0.0121 (11) | 0.0136 (12) | 0.0175 (11) | −0.0050 (9) | −0.0013 (9) | −0.0023 (9) |
| C1 | 0.0198 (15) | 0.0231 (16) | 0.0128 (12) | −0.0048 (12) | −0.0051 (11) | 0.0015 (11) |
| C2 | 0.0137 (13) | 0.0106 (14) | 0.0155 (12) | −0.0011 (11) | −0.0032 (10) | −0.0022 (11) |
| C3 | 0.0136 (13) | 0.0138 (14) | 0.0147 (12) | −0.0019 (11) | −0.0053 (10) | −0.0025 (11) |
| C4 | 0.0134 (13) | 0.0118 (14) | 0.0153 (12) | −0.0008 (10) | −0.0034 (10) | −0.0038 (11) |
| C5 | 0.0137 (13) | 0.0154 (15) | 0.0133 (12) | 0.0001 (11) | −0.0041 (10) | −0.0034 (11) |
| C6 | 0.0139 (13) | 0.0162 (15) | 0.0193 (13) | −0.0029 (11) | −0.0070 (10) | −0.0039 (11) |
| C7 | 0.0163 (14) | 0.0102 (14) | 0.0178 (13) | −0.0021 (11) | −0.0024 (10) | −0.0006 (11) |
| C8 | 0.0160 (14) | 0.0144 (15) | 0.0143 (12) | 0.0006 (11) | −0.0050 (10) | −0.0023 (11) |
| C9 | 0.0158 (14) | 0.0156 (15) | 0.0140 (12) | −0.0021 (11) | −0.0059 (10) | −0.0031 (11) |
Geometric parameters (Å, °)
| S1—C2 | 1.695 (3) | C1—H1B | 0.9800 |
| O1—C5 | 1.367 (3) | C1—H1C | 0.9800 |
| O1—H1o | 0.84 (3) | C3—C4 | 1.450 (4) |
| O2—C8 | 1.379 (3) | C3—H3 | 0.9500 |
| O2—H2o | 0.84 (3) | C4—C5 | 1.401 (4) |
| N1—C2 | 1.325 (3) | C4—C9 | 1.403 (3) |
| N1—C1 | 1.453 (3) | C5—C6 | 1.388 (4) |
| N1—H1n | 0.84 (3) | C6—C7 | 1.393 (3) |
| N2—C2 | 1.349 (3) | C6—H6 | 0.9500 |
| N2—N3 | 1.382 (3) | C7—C8 | 1.383 (4) |
| N2—H2n | 0.84 (3) | C7—H7 | 0.9500 |
| N3—C3 | 1.286 (3) | C8—C9 | 1.379 (4) |
| C1—H1A | 0.9800 | C9—H9 | 0.9500 |
| C5—O1—H1O | 110 (2) | C4—C3—H3 | 118.6 |
| C8—O2—H2O | 117 (3) | C5—C4—C9 | 118.9 (2) |
| C2—N1—C1 | 123.8 (2) | C5—C4—C3 | 123.2 (2) |
| C2—N1—H1N | 117 (2) | C9—C4—C3 | 117.9 (2) |
| C1—N1—H1N | 119 (2) | O1—C5—C6 | 117.7 (2) |
| C2—N2—N3 | 121.3 (2) | O1—C5—C4 | 122.3 (2) |
| C2—N2—H2N | 122 (2) | C6—C5—C4 | 120.0 (2) |
| N3—N2—H2N | 116 (2) | C5—C6—C7 | 120.1 (3) |
| C3—N3—N2 | 114.5 (2) | C5—C6—H6 | 120.0 |
| N1—C1—H1A | 109.5 | C7—C6—H6 | 120.0 |
| N1—C1—H1B | 109.5 | C8—C7—C6 | 120.3 (2) |
| H1A—C1—H1B | 109.5 | C8—C7—H7 | 119.9 |
| N1—C1—H1C | 109.5 | C6—C7—H7 | 119.9 |
| H1A—C1—H1C | 109.5 | O2—C8—C9 | 116.7 (2) |
| H1B—C1—H1C | 109.5 | O2—C8—C7 | 123.3 (2) |
| N1—C2—N2 | 118.2 (2) | C9—C8—C7 | 119.9 (2) |
| N1—C2—S1 | 123.80 (19) | C8—C9—C4 | 120.8 (2) |
| N2—C2—S1 | 118.0 (2) | C8—C9—H9 | 119.6 |
| N3—C3—C4 | 122.7 (2) | C4—C9—H9 | 119.6 |
| N3—C3—H3 | 118.6 | ||
| C2—N2—N3—C3 | −175.1 (2) | C3—C4—C5—C6 | −177.4 (2) |
| C1—N1—C2—N2 | 178.3 (2) | O1—C5—C6—C7 | 178.8 (2) |
| C1—N1—C2—S1 | −2.5 (4) | C4—C5—C6—C7 | −2.0 (4) |
| N3—N2—C2—N1 | −11.0 (4) | C5—C6—C7—C8 | 1.1 (4) |
| N3—N2—C2—S1 | 169.69 (19) | C6—C7—C8—O2 | 179.7 (2) |
| N2—N3—C3—C4 | 177.5 (2) | C6—C7—C8—C9 | 0.2 (4) |
| N3—C3—C4—C5 | −0.6 (4) | O2—C8—C9—C4 | 179.8 (2) |
| N3—C3—C4—C9 | −179.5 (2) | C7—C8—C9—C4 | −0.7 (4) |
| C9—C4—C5—O1 | −179.3 (2) | C5—C4—C9—C8 | −0.2 (4) |
| C3—C4—C5—O1 | 1.8 (4) | C3—C4—C9—C8 | 178.8 (2) |
| C9—C4—C5—C6 | 1.5 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1o···N3 | 0.84 (3) | 1.97 (2) | 2.698 (3) | 144 (3) |
| O2—H2o···S1i | 0.84 (3) | 2.46 (2) | 3.182 (2) | 144 (3) |
| N2—H2n···O1ii | 0.84 (3) | 2.47 (3) | 3.111 (3) | 134 (3) |
Symmetry codes: (i) x+1, y+1, z−1; (ii) x−1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK2278).
References
- Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Kayed, S. F., Farina, Y., Baba, I. & Simpson, J. (2008). Acta Cryst. E64, o824–o825. [DOI] [PMC free article] [PubMed]
- Libermann, D., Moyeux, M., Rouaix, A., Maillard, J., Hengl, L. & Himbert, J. (1953). Bull. Soc. Chim. Fr. pp. 957–962.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Taniyama, H. & Tanaka, Y. (1965). Yakugaku Kenkyu, 36, 319–328.
- Vrdoljak, V., Cindrić, M., Milić, D., Matković-Čalogović, D., Novak, P. & Kamenar, B. (2005). Polyhedron, 24, 1717–1726.
- Westrip, S. P. (2008). publCIF In preparation.
- Xue, C.-B., Zhang, L., Luo, W.-C., Xie, X.-Y., Jiang, L. & Xiao, T. (2007). Bioorg. Med. Chem.15, 2006–2015. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808018801/tk2278sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018801/tk2278Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

