Abstract
The two molecules of the title compound, C13H8BrClFNO, in the asymmetric unit are interconnected by π–π interactions between the salicylaldehyde and aniline units, the shortest interplanar distance being 3.317 (3) Å. These pairs and their translation equivalents are further linked by C—H⋯F hydrogen bonds, forming a one-dimensional infinite chain. In addition, there is an intramolecular O—H⋯N hydrogen bond connecting the OH group and the imine N atom.
Related literature
For related literature, see: Collinson & Fenton (1996 ▶); Garnovski & Vasil Chenko (2002 ▶); Kannan & Ramesh (2006 ▶); Karvembu et al. (2003 ▶); Kumar & Ramesh (2004 ▶); Nakajima et al. (1998 ▶); Prabhakaran et al. (2004 ▶); Ramesh & Maheswaran (2003 ▶); Sivagamasundari & Ramesh (2007 ▶).
Experimental
Crystal data
C13H8BrClFNO
M r = 328.56
Triclinic,
a = 8.2274 (3) Å
b = 8.6566 (3) Å
c = 10.8880 (4) Å
α = 69.545 (2)°
β = 70.820 (2)°
γ = 62.341 (2)°
V = 630.48 (4) Å3
Z = 2
Mo Kα radiation
μ = 3.47 mm−1
T = 293 (2) K
0.30 × 0.20 × 0.20 mm
Data collection
Bruker APEX2 CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.451, T max = 0.573 (expected range = 0.393–0.500)
16111 measured reflections
3975 independent reflections
2533 reflections with I > 2σ(I)
R int = 0.027
Refinement
R[F 2 > 2σ(F 2)] = 0.044
wR(F 2) = 0.138
S = 0.99
3975 reflections
164 parameters
H-atom parameters constrained
Δρmax = 0.72 e Å−3
Δρmin = −0.56 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808017443/im2067sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808017443/im2067Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C11—H11⋯F1i | 0.93 | 2.45 | 3.349 (4) | 162 |
| O1—H1⋯N1 | 0.82 | 1.86 | 2.577 (3) | 146 |
Symmetry code: (i)
.
Acknowledgments
The authors thank the Sophisticated Analytical Instruments Facility, Indian Institute of Technology Madras, Chennai, for the X-ray data collection.
supplementary crystallographic information
Comment
Monobasic bidentate Schiff base ligands exemplified by the title compound exhibiting both N and O donor sites play an important role in the synthesis of metal complexes and represent an important class of chelating ligands (Sivagamasundari et al., 2007; Prabhakaran et al., 2004). Among the prodigious number and variety of Schiff bases, salicylaldimines have been studied widely because of their synthetic proclivity and structural diversity (Collinson et al., 1996; Garnovski et al., 2002). In recent years, there has been considerable interest in the chemistry of transition metal complexes of Schiff bases. This is due to the fact that Schiff bases offer opportunities for inducing substrate chirality, tuning metal centered electronic properties, enhancing solubility and stability of either homogeneous or heterogeneous catalysts and producing antibacterial agents (Karvembu et al., 2003; Nakajima et al., 1998; Kumar et al., 2004; Ramesh et al., 2003; Kannan et al., 2006). With the above view, in our ongoing research, we have chosen the title compound as a specific and representative ligand to synthesize ruthenium complexes. The title compound and its complexes will be screened against the bacterei E. coli, S.aureous, P.mirabilis and P.vulgaris.
The title compound, C9H8BrClFNO, crystallizes in the triclinic space group P1 with one molecule in the asymmetric unit. Figure 1 shows the ORTEP representation of the molecule with thermal ellipsoids at the 50% probability level. The packing of the molecules in the unit cell showing the inter molecular interactions is depicted in Figure 2. The molecule and its inversion analogue are linked to each other by Π-Π interactions between the salicylaldehyde moiety and the aniline moiety with the shortest interplanar distance of 3.317 (3) Å (1 - x, 1 - y, 1 - z). The molecules are further connected by C11—H11···F1 hydrogen bonds (2.452 Å, 161.89°, 1 + x, -1 + y, 1 + z) forming an one- dimensional infinite chain. The packing is further stabilized by Van der Waals interactions. In addition, an intramolecular hydrogen bonding O1—H1···N1 (2.577 (3) Å, 145.9°) linking the OH group of the former salicyleldehyde and the imine N atom. The dihedral angle between the salicylaldehyde and aniline moieties is 8.8 (2)°.
Experimental
The monobasic bidentate Schiff base ligand, 2-bromo-4-chloro-6-[(4' -fluorophenylimino)-methyl]-phenol, was synthesized by the condensation of 3-bromo-5-chloro-2-hydroxybenzaldehyde (0.1 mmol) with 4-fluoroaniline (0.1 mmol) in a 1:1 molar ratio in MeOH (25 cm3). The solution was heated under reflux for 3 h with continuous stirring and then concentrated to 5 cm3. On cooling the pale orange crystalline product precipitated, was filtered off, washed with ice cold EtOH and dried. The product was recrystallized from EtOH. The purity of the compound was checked by TLC.
Refinement
All the H atoms were located from the difference Fourier map. However, the aromatic H atoms were geometrically constrained at idealized positions (C—H = 0.93 Å) and were refined using a riding model with Uiso equal to 1.2 times Ueq of the parent carbon atom. The hydroxyl hydrogen was refined isotropically with restraint: O—H = 0.820 (1) Å.
Figures
Fig. 1.
The ORTEP representation of the molecule with thermal ellipsoids at the 50% probability level.
Fig. 2.
Packing of molecules in the unit cell. Intermolecular interactions are shown with dashed lines.
Crystal data
| C13H8BrClFNO | Z = 2 |
| Mr = 328.56 | F000 = 324 |
| Triclinic, P1 | Dx = 1.731 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
| a = 8.2274 (3) Å | Cell parameters from 5635 reflections |
| b = 8.6566 (3) Å | θ = 2.7–31.1º |
| c = 10.8880 (4) Å | µ = 3.47 mm−1 |
| α = 69.545 (2)º | T = 293 (2) K |
| β = 70.820 (2)º | Rectangle, pale orange |
| γ = 62.341 (2)º | 0.30 × 0.20 × 0.20 mm |
| V = 630.48 (4) Å3 |
Data collection
| Bruker APEX2 CCD diffractometer | 3975 independent reflections |
| Radiation source: fine-focus sealed tube | 2533 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.027 |
| T = 293(2) K | θmax = 30.9º |
| ω and φ scans | θmin = 2.0º |
| Absorption correction: multi-scan(SADABS; Bruker, 1999) | h = −11→11 |
| Tmin = 0.451, Tmax = 0.573 | k = −12→12 |
| 16111 measured reflections | l = −15→15 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
| wR(F2) = 0.138 | w = 1/[σ2(Fo2) + (0.0708P)2 + 0.3467P] where P = (Fo2 + 2Fc2)/3 |
| S = 0.99 | (Δ/σ)max = 0.001 |
| 3975 reflections | Δρmax = 0.72 e Å−3 |
| 164 parameters | Δρmin = −0.56 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.3576 (4) | 0.9290 (4) | 0.1434 (3) | 0.0520 (7) | |
| C2 | 0.3513 (4) | 1.0070 (4) | 0.2347 (3) | 0.0572 (7) | |
| H2 | 0.2789 | 1.1284 | 0.2308 | 0.069* | |
| C3 | 0.4551 (4) | 0.9013 (4) | 0.3333 (3) | 0.0501 (6) | |
| H3 | 0.4523 | 0.9521 | 0.3968 | 0.060* | |
| C4 | 0.5627 (3) | 0.7212 (3) | 0.3389 (2) | 0.0384 (5) | |
| C5 | 0.5679 (4) | 0.6469 (4) | 0.2429 (3) | 0.0486 (6) | |
| H5 | 0.6412 | 0.5261 | 0.2448 | 0.058* | |
| C6 | 0.4637 (4) | 0.7527 (4) | 0.1440 (3) | 0.0535 (7) | |
| H6 | 0.4662 | 0.7040 | 0.0792 | 0.064* | |
| C7 | 0.7801 (4) | 0.4644 (3) | 0.4552 (3) | 0.0405 (5) | |
| H7 | 0.8117 | 0.4086 | 0.3866 | 0.049* | |
| C8 | 0.8715 (3) | 0.3665 (3) | 0.5699 (2) | 0.0366 (5) | |
| C9 | 0.8321 (3) | 0.4496 (3) | 0.6718 (3) | 0.0378 (5) | |
| C10 | 0.9237 (4) | 0.3494 (3) | 0.7792 (3) | 0.0417 (5) | |
| C11 | 1.0468 (4) | 0.1735 (3) | 0.7878 (3) | 0.0433 (6) | |
| H11 | 1.1053 | 0.1086 | 0.8607 | 0.052* | |
| C12 | 1.0820 (4) | 0.0950 (3) | 0.6861 (3) | 0.0434 (6) | |
| C13 | 0.9977 (4) | 0.1888 (3) | 0.5779 (3) | 0.0427 (5) | |
| H13 | 1.0248 | 0.1338 | 0.5098 | 0.051* | |
| N1 | 0.6581 (3) | 0.6243 (3) | 0.4471 (2) | 0.0402 (5) | |
| O1 | 0.7120 (3) | 0.6194 (2) | 0.6688 (2) | 0.0525 (5) | |
| H1 | 0.6570 | 0.6571 | 0.6070 | 0.087 (13)* | |
| F1 | 0.2529 (3) | 1.0312 (3) | 0.04826 (19) | 0.0759 (6) | |
| Cl1 | 1.23745 (13) | −0.12851 (9) | 0.69813 (9) | 0.0681 (2) | |
| Br1 | 0.87756 (6) | 0.45988 (5) | 0.91496 (4) | 0.07867 (18) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0463 (14) | 0.0613 (17) | 0.0414 (14) | −0.0219 (13) | −0.0227 (12) | 0.0098 (13) |
| C2 | 0.0576 (17) | 0.0432 (14) | 0.0585 (18) | −0.0087 (13) | −0.0269 (14) | 0.0004 (13) |
| C3 | 0.0554 (16) | 0.0432 (14) | 0.0507 (15) | −0.0129 (12) | −0.0241 (12) | −0.0063 (12) |
| C4 | 0.0385 (12) | 0.0400 (12) | 0.0367 (12) | −0.0169 (10) | −0.0153 (10) | 0.0002 (10) |
| C5 | 0.0505 (15) | 0.0456 (14) | 0.0504 (15) | −0.0129 (12) | −0.0236 (12) | −0.0079 (12) |
| C6 | 0.0586 (17) | 0.0672 (19) | 0.0400 (14) | −0.0264 (15) | −0.0212 (12) | −0.0057 (13) |
| C7 | 0.0443 (13) | 0.0398 (12) | 0.0407 (12) | −0.0146 (10) | −0.0174 (10) | −0.0078 (10) |
| C8 | 0.0373 (11) | 0.0352 (11) | 0.0377 (12) | −0.0126 (9) | −0.0156 (9) | −0.0040 (9) |
| C9 | 0.0362 (11) | 0.0339 (11) | 0.0425 (13) | −0.0089 (9) | −0.0154 (10) | −0.0080 (10) |
| C10 | 0.0437 (13) | 0.0425 (13) | 0.0413 (13) | −0.0127 (10) | −0.0174 (10) | −0.0102 (10) |
| C11 | 0.0449 (13) | 0.0397 (12) | 0.0425 (13) | −0.0128 (10) | −0.0222 (11) | 0.0005 (11) |
| C12 | 0.0429 (13) | 0.0310 (11) | 0.0522 (15) | −0.0083 (10) | −0.0200 (11) | −0.0044 (10) |
| C13 | 0.0471 (13) | 0.0347 (12) | 0.0462 (14) | −0.0100 (10) | −0.0177 (11) | −0.0102 (10) |
| N1 | 0.0409 (11) | 0.0395 (11) | 0.0407 (11) | −0.0139 (9) | −0.0183 (9) | −0.0034 (9) |
| O1 | 0.0568 (11) | 0.0372 (9) | 0.0584 (12) | 0.0023 (8) | −0.0302 (9) | −0.0173 (8) |
| F1 | 0.0744 (12) | 0.0842 (14) | 0.0574 (11) | −0.0237 (11) | −0.0444 (10) | 0.0151 (10) |
| Cl1 | 0.0768 (5) | 0.0338 (3) | 0.0812 (6) | 0.0009 (3) | −0.0358 (4) | −0.0126 (3) |
| Br1 | 0.0981 (3) | 0.0702 (3) | 0.0663 (3) | −0.00208 (19) | −0.0451 (2) | −0.03146 (18) |
Geometric parameters (Å, °)
| C1—F1 | 1.355 (3) | C7—H7 | 0.9300 |
| C1—C6 | 1.361 (5) | C8—C13 | 1.391 (3) |
| C1—C2 | 1.360 (5) | C8—C9 | 1.399 (3) |
| C2—C3 | 1.382 (4) | C9—O1 | 1.334 (3) |
| C2—H2 | 0.9300 | C9—C10 | 1.396 (3) |
| C3—C4 | 1.381 (4) | C10—C11 | 1.373 (4) |
| C3—H3 | 0.9300 | C10—Br1 | 1.878 (3) |
| C4—C5 | 1.387 (4) | C11—C12 | 1.379 (4) |
| C4—N1 | 1.418 (3) | C11—H11 | 0.9300 |
| C5—C6 | 1.386 (4) | C12—C13 | 1.370 (3) |
| C5—H5 | 0.9300 | C12—Cl1 | 1.741 (3) |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C7—N1 | 1.270 (3) | O1—H1 | 0.8200 |
| C7—C8 | 1.460 (3) | ||
| F1—C1—C6 | 118.6 (3) | C13—C8—C9 | 120.0 (2) |
| F1—C1—C2 | 118.5 (3) | C13—C8—C7 | 119.4 (2) |
| C6—C1—C2 | 122.8 (2) | C9—C8—C7 | 120.5 (2) |
| C1—C2—C3 | 118.3 (3) | O1—C9—C10 | 119.7 (2) |
| C1—C2—H2 | 120.9 | O1—C9—C8 | 122.2 (2) |
| C3—C2—H2 | 120.9 | C10—C9—C8 | 118.1 (2) |
| C4—C3—C2 | 120.9 (3) | C11—C10—C9 | 122.0 (2) |
| C4—C3—H3 | 119.6 | C11—C10—Br1 | 119.22 (18) |
| C2—C3—H3 | 119.6 | C9—C10—Br1 | 118.82 (19) |
| C3—C4—C5 | 119.2 (2) | C10—C11—C12 | 118.6 (2) |
| C3—C4—N1 | 116.1 (2) | C10—C11—H11 | 120.7 |
| C5—C4—N1 | 124.7 (2) | C12—C11—H11 | 120.7 |
| C6—C5—C4 | 120.0 (3) | C13—C12—C11 | 121.5 (2) |
| C6—C5—H5 | 120.0 | C13—C12—Cl1 | 120.1 (2) |
| C4—C5—H5 | 120.0 | C11—C12—Cl1 | 118.38 (19) |
| C1—C6—C5 | 118.8 (3) | C12—C13—C8 | 119.8 (2) |
| C1—C6—H6 | 120.6 | C12—C13—H13 | 120.1 |
| C5—C6—H6 | 120.6 | C8—C13—H13 | 120.1 |
| N1—C7—C8 | 121.3 (2) | C7—N1—C4 | 122.7 (2) |
| N1—C7—H7 | 119.3 | C9—O1—H1 | 109.5 |
| C8—C7—H7 | 119.3 | ||
| F1—C1—C2—C3 | 178.5 (3) | O1—C9—C10—C11 | 179.2 (3) |
| C6—C1—C2—C3 | −1.0 (5) | C8—C9—C10—C11 | −1.1 (4) |
| C1—C2—C3—C4 | 0.1 (5) | O1—C9—C10—Br1 | −1.2 (3) |
| C2—C3—C4—C5 | 0.8 (4) | C8—C9—C10—Br1 | 178.50 (19) |
| C2—C3—C4—N1 | −177.8 (3) | C9—C10—C11—C12 | 0.8 (4) |
| C3—C4—C5—C6 | −0.9 (4) | Br1—C10—C11—C12 | −178.8 (2) |
| N1—C4—C5—C6 | 177.6 (2) | C10—C11—C12—C13 | 0.3 (4) |
| F1—C1—C6—C5 | −178.6 (3) | C10—C11—C12—Cl1 | −179.7 (2) |
| C2—C1—C6—C5 | 1.0 (5) | C11—C12—C13—C8 | −0.9 (4) |
| C4—C5—C6—C1 | 0.0 (4) | Cl1—C12—C13—C8 | 179.0 (2) |
| N1—C7—C8—C13 | 177.0 (3) | C9—C8—C13—C12 | 0.6 (4) |
| N1—C7—C8—C9 | −2.6 (4) | C7—C8—C13—C12 | −179.0 (2) |
| C13—C8—C9—O1 | −179.9 (2) | C8—C7—N1—C4 | −178.1 (2) |
| C7—C8—C9—O1 | −0.3 (4) | C3—C4—N1—C7 | −170.8 (3) |
| C13—C8—C9—C10 | 0.4 (4) | C5—C4—N1—C7 | 10.7 (4) |
| C7—C8—C9—C10 | 180.0 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C11—H11···F1i | 0.93 | 2.45 | 3.349 (4) | 162 |
| O1—H1···N1 | 0.82 | 1.86 | 2.577 (3) | 146 |
Symmetry codes: (i) x+1, y−1, z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IM2067).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808017443/im2067sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808017443/im2067Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


