Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jul 26;64(Pt 8):m1068. doi: 10.1107/S1600536808022939

cis-Aqua­bis(2,4-dichloro-6-formyl­phenolato-κ2 O,O′)(N,N-dimethyl­formamide-κO)nickel(II)

Fa-Yun Chen a, Shu-Hua Zhang b,*, Chen-Min Ge b
PMCID: PMC2961979  PMID: 21203049

Abstract

In the title compound, [Ni(C7H3Cl2O2)2(C3H7NO)(H2O)], the NiII ion is coordinated by four O atoms from two bidentate 2,4-dichloro-6-formyl­phenolate ligands, one O atom from a water ligand and one O atom from a dimethyl­formamide ligand in a slightly distorted octa­hedral environment. In the crystal structure, centrosymmetric dimers are formed though O—H⋯O and O—H⋯Cl hydrogen bonds; π–π stacking inter­actions, with a centroid–centroid distance of 3.796 (2) Å, are also found.

Related literature

For related literature, see: Cohen et al. (1964); Desiraju (1989); Mathews & Manohar (1991); Zaman et al. (2004); Zhang et al. (2007); Zordan et al. (2005).graphic file with name e-64-m1068-scheme1.jpg

Experimental

Crystal data

  • [Ni(C7H3Cl2O2)2(C3H7NO)(H2O)]

  • M r = 529.81

  • Monoclinic, Inline graphic

  • a = 10.404 (2) Å

  • b = 9.6130 (19) Å

  • c = 22.161 (4) Å

  • β = 92.44 (3)°

  • V = 2214.4 (8) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.39 mm−1

  • T = 293 (2) K

  • 0.48 × 0.40 × 0.35 mm

Data collection

  • Bruker SMART CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.555, T max = 0.642

  • 10765 measured reflections

  • 3969 independent reflections

  • 3010 reflections with I > 2σ(I)

  • R int = 0.036

Refinement

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.111

  • S = 1.07

  • 3969 reflections

  • 266 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.59 e Å−3

  • Δρmin = −0.37 e Å−3

Data collection: SMART (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022939/lh2644sup1.cif

e-64-m1068-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022939/lh2644Isup2.hkl

e-64-m1068-Isup2.hkl (194.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Ni1—O3 2.041 (2)
Ni1—O1 2.041 (2)
Ni1—O2 2.061 (3)
Ni1—O4 2.070 (3)
Ni1—O5 2.148 (3)
Ni1—O6 2.150 (3)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O6—H6A⋯O1i 0.82 1.91 2.714 (3) 168
O6—H6B⋯O3i 0.83 (4) 2.17 (4) 2.850 (4) 139 (4)
O6—H6B⋯Cl3i 0.84 (4) 2.67 (4) 3.374 (3) 143 (4)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge financial support from the Natural Science Foundation of Guangxi Province, China (grant No. 0832085).

supplementary crystallographic information

Comment

Halogens have a ubiquitous presence in both inorganic and organic chemistry. Schiff bases of chloro substituents on aromatic groups have aroused increasing interest in recent years because these halogenated compounds are an attractive target for use in supramolecular chemistry and crystal engineering wherein the halogen atoms are directly involved in forming intermolecular interactions (Cohen et al., 1964; Zordan et al., 2005; Desiraju, 1989; Zaman et al., 2004; Zhang et al., 2007). The title compound, (I), contains the dichloride ligand 3,5-Dichloro-2-hydroxy-benzaldehyde, with two Cl atoms accessible at the periphery of each ligand.

In the molecular structure of (I), the NiII ion is coordinated by four O atoms from two bidentate 3,5-Dichloro-2-hydroxy-benzaldehyde ligands, one O atom from a H2O ligand and one O atom from a N,N'-dimethylformamide ligand forming a slightly distorted octahedral geometry (Fig. 1). In the crystal structure O—H···O and O—H···Cl hydrogen bonds (see Table 2) result in the formation of a centrosymmetric dimer (Fig. 2). Within the dimer, there are π–π stacking interactions between the C1–C6 and C8–C13(-x, 2-y, 1-z) rings with centroid···centroid distance of 3.796 (2) Å and interplanar distance of 3.59 Å giving an offset angle of 3.5°. In the crystal structure, dimers are further linked through weak intermolecular C—H···O hydrogen bonds (Fig. 3) (C5—H5A···O4ii, 3.454 Å, symmetry code: (ii) 1 + x, 2 - y, 1 + z).

Experimental

A ethanol solution (30 ml) containing 3,5-Dichloro-2-hydroxy-benzaldehyde (0.191 g, 1 mmol) was dropwise added to an aqueous solution containing amino-methanesulfonic acid (0.111 g, 1 mmol) and sodium hydroxide (0.040 g, 1 mmol) with stirred during 10 min. After stirring for 1 h, an aqueous solution of Nickel chloride (0.237 g, 1 mmol) was added to the resulting solution and stirred for 2 h. The green solid compound was separated out and dissolved by N,N-Dimethylformamide, then the green solution was filtrated. After 10 days, green crystals were produced from the filtrate (yield: 65.3%, based on Ni).

Refinement

H atoms were positioned geometrically and were treated as riding atoms, with C—H distances of 0.93–0.96 Å and Uiso(H) = 1.2Ueq(C), and with and O—H distance of 0.82 Å and Uiso(H) = 1.5Ueq(O) for H6A. Atom H6B was refined independently with an isotropic displacement parameter.

Figures

Fig. 1.

Fig. 1.

A view of (I), showing 30% probability displacement ellipsoids. Hydrogen atoms are omitted.

Fig. 2.

Fig. 2.

The dimer of (I), Dashed lines indicate hydrogen bonds.

Fig. 3.

Fig. 3.

1-D chain of (I), Dashed lines indicate hydrogen bonds.

Crystal data

[Ni(C7H3Cl2O2)2(C3H7N1O1)(H2O1)] F000 = 1072
Mr = 529.81 Dx = 1.589 Mg m3
Monoclinic, P21/c Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3969 reflections
a = 10.404 (2) Å θ = 1.8–25.2º
b = 9.6130 (19) Å µ = 1.39 mm1
c = 22.161 (4) Å T = 293 (2) K
β = 92.44 (3)º Block, green
V = 2214.4 (8) Å3 0.48 × 0.40 × 0.35 mm
Z = 4

Data collection

Bruker SMART CCD diffractometer 3969 independent reflections
Radiation source: fine-focus sealed tube 3010 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.036
Detector resolution: 0 pixels mm-1 θmax = 25.2º
T = 293(2) K θmin = 1.8º
ω scans h = −12→12
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) k = −11→11
Tmin = 0.555, Tmax = 0.642 l = −23→26
10765 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111   w = 1/[σ2(Fo2) + (0.0455P)2 + 2.189P] where P = (Fo2 + 2Fc2)/3
S = 1.07 (Δ/σ)max < 0.001
3969 reflections Δρmax = 0.59 e Å3
266 parameters Δρmin = −0.37 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ni1 0.20449 (4) 0.95403 (5) 0.46317 (2) 0.03298 (15)
Cl3 −0.19959 (10) 0.74563 (12) 0.37793 (5) 0.0551 (3)
Cl1 0.04788 (11) 0.62415 (13) 0.61561 (5) 0.0620 (3)
Cl4 −0.17775 (12) 1.10954 (17) 0.18744 (5) 0.0754 (4)
Cl2 0.48052 (13) 0.70149 (19) 0.75310 (6) 0.0915 (5)
O2 0.3577 (2) 1.0446 (3) 0.51032 (11) 0.0395 (6)
O1 0.1544 (2) 0.8520 (3) 0.53947 (10) 0.0363 (6)
O4 0.2662 (2) 1.0551 (3) 0.38720 (11) 0.0439 (7)
O6 0.1041 (2) 1.1430 (3) 0.48293 (13) 0.0384 (6)
H6A 0.0272 1.1332 0.4743 0.058*
O3 0.0510 (2) 0.8740 (3) 0.41437 (10) 0.0374 (6)
O5 0.3235 (2) 0.7792 (3) 0.44247 (12) 0.0437 (7)
C1 0.2302 (3) 0.8212 (4) 0.58538 (15) 0.0335 (8)
C7 0.4025 (3) 1.0013 (4) 0.55949 (17) 0.0393 (9)
H7A 0.4775 1.0444 0.5742 0.047*
C8 0.0074 (3) 0.9226 (4) 0.36312 (16) 0.0335 (8)
C9 −0.1159 (3) 0.8770 (4) 0.33844 (16) 0.0381 (9)
C5 0.4263 (4) 0.8523 (5) 0.64989 (17) 0.0485 (11)
H5A 0.5037 0.8981 0.6584 0.058*
C11 −0.1049 (4) 1.0351 (5) 0.25254 (17) 0.0491 (11)
C4 0.3865 (4) 0.7480 (5) 0.68905 (18) 0.0536 (12)
C13 0.0725 (4) 1.0237 (4) 0.32556 (16) 0.0405 (9)
C12 0.0161 (4) 1.0781 (5) 0.27125 (17) 0.0491 (11)
H12A 0.0604 1.1422 0.2486 0.059*
C6 0.3515 (3) 0.8893 (4) 0.59776 (16) 0.0363 (9)
C3 0.2688 (4) 0.6781 (5) 0.67818 (19) 0.0531 (11)
H3A 0.2423 0.6093 0.7044 0.064*
C14 0.2000 (4) 1.0767 (4) 0.34105 (18) 0.0456 (10)
H14A 0.2360 1.1341 0.3125 0.055*
C10 −0.1696 (4) 0.9316 (4) 0.28593 (17) 0.0450 (10)
H10A −0.2501 0.9005 0.2719 0.054*
C2 0.1946 (4) 0.7137 (4) 0.62829 (18) 0.0424 (9)
N1 0.3665 (4) 0.5364 (4) 0.43658 (16) 0.0520 (9)
C15 0.2951 (4) 0.6490 (5) 0.45053 (17) 0.0454 (10)
H15A 0.2169 0.6310 0.4678 0.054*
C16 0.4864 (5) 0.5594 (6) 0.4064 (3) 0.0785 (16)
H16A 0.5039 0.6574 0.4049 0.118*
H16B 0.4787 0.5230 0.3661 0.118*
H16C 0.5554 0.5131 0.4284 0.118*
C17 0.3215 (7) 0.3854 (5) 0.4433 (3) 0.102 (2)
H17A 0.2417 0.3840 0.4635 0.152*
H17B 0.3852 0.3339 0.4666 0.152*
H17C 0.3093 0.3440 0.4041 0.152*
H6B 0.098 (4) 1.144 (5) 0.5204 (19) 0.053 (14)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.0240 (2) 0.0404 (3) 0.0343 (3) −0.0019 (2) −0.00076 (18) 0.0032 (2)
Cl3 0.0426 (6) 0.0615 (7) 0.0608 (7) −0.0183 (5) −0.0015 (5) −0.0011 (5)
Cl1 0.0498 (6) 0.0627 (8) 0.0729 (8) −0.0140 (6) −0.0032 (5) 0.0246 (6)
Cl4 0.0634 (8) 0.1139 (12) 0.0473 (7) 0.0148 (7) −0.0164 (6) 0.0139 (7)
Cl2 0.0638 (8) 0.1517 (15) 0.0571 (8) 0.0273 (9) −0.0192 (6) 0.0263 (8)
O2 0.0269 (13) 0.0485 (16) 0.0427 (15) −0.0026 (12) −0.0017 (11) 0.0023 (12)
O1 0.0250 (12) 0.0498 (16) 0.0338 (13) −0.0039 (11) −0.0017 (10) 0.0079 (12)
O4 0.0331 (14) 0.0597 (18) 0.0389 (15) −0.0096 (13) 0.0006 (12) 0.0086 (13)
O6 0.0254 (13) 0.0477 (17) 0.0420 (16) 0.0006 (11) 0.0006 (11) 0.0018 (13)
O3 0.0291 (13) 0.0466 (16) 0.0362 (14) −0.0065 (11) −0.0026 (11) 0.0037 (12)
O5 0.0376 (15) 0.0380 (16) 0.0558 (17) 0.0015 (12) 0.0049 (12) −0.0017 (13)
C1 0.0301 (19) 0.038 (2) 0.0329 (19) 0.0057 (16) 0.0028 (15) −0.0011 (16)
C7 0.0231 (17) 0.049 (2) 0.046 (2) −0.0035 (17) −0.0017 (16) −0.0043 (19)
C8 0.0279 (18) 0.038 (2) 0.034 (2) 0.0025 (16) 0.0010 (15) −0.0049 (16)
C9 0.033 (2) 0.041 (2) 0.040 (2) −0.0006 (17) 0.0021 (16) −0.0042 (17)
C5 0.031 (2) 0.071 (3) 0.043 (2) 0.010 (2) −0.0048 (17) −0.008 (2)
C11 0.042 (2) 0.071 (3) 0.033 (2) 0.010 (2) −0.0061 (17) −0.002 (2)
C4 0.042 (2) 0.082 (3) 0.036 (2) 0.018 (2) −0.0031 (18) 0.007 (2)
C13 0.033 (2) 0.054 (3) 0.035 (2) −0.0012 (18) 0.0016 (16) −0.0016 (18)
C12 0.049 (2) 0.059 (3) 0.040 (2) −0.001 (2) 0.0009 (19) 0.008 (2)
C6 0.0258 (18) 0.047 (2) 0.036 (2) 0.0043 (16) 0.0015 (15) −0.0056 (17)
C3 0.045 (2) 0.067 (3) 0.047 (2) 0.012 (2) 0.004 (2) 0.016 (2)
C14 0.043 (2) 0.057 (3) 0.038 (2) −0.011 (2) 0.0053 (18) 0.0128 (19)
C10 0.031 (2) 0.060 (3) 0.044 (2) 0.0008 (19) −0.0034 (17) −0.015 (2)
C2 0.038 (2) 0.044 (2) 0.045 (2) 0.0038 (18) 0.0032 (17) 0.0064 (19)
N1 0.056 (2) 0.041 (2) 0.059 (2) −0.0003 (17) −0.0052 (18) −0.0027 (17)
C15 0.040 (2) 0.053 (3) 0.043 (2) −0.010 (2) −0.0007 (18) −0.003 (2)
C16 0.066 (3) 0.075 (4) 0.096 (4) 0.020 (3) 0.015 (3) −0.009 (3)
C17 0.124 (6) 0.037 (3) 0.142 (6) −0.015 (3) −0.008 (5) 0.001 (3)

Geometric parameters (Å, °)

Ni1—O3 2.041 (2) C5—C4 1.400 (6)
Ni1—O1 2.041 (2) C5—C6 1.411 (5)
Ni1—O2 2.061 (3) C5—H5A 0.9300
Ni1—O4 2.070 (3) C11—C12 1.372 (6)
Ni1—O5 2.148 (3) C11—C10 1.426 (6)
Ni1—O6 2.150 (3) C4—C3 1.408 (6)
Cl3—C9 1.784 (4) C13—C12 1.416 (5)
Cl1—C2 1.764 (4) C13—C14 1.448 (5)
Cl4—C11 1.754 (4) C12—H12A 0.9300
Cl2—C4 1.748 (4) C3—C2 1.365 (5)
O2—C7 1.239 (4) C3—H3A 0.9300
O1—C1 1.295 (4) C14—H14A 0.9300
O4—C14 1.226 (4) C10—H10A 0.9300
O6—H6A 0.8200 N1—C15 1.356 (5)
O6—H6B 0.83 (4) N1—C16 1.456 (6)
O3—C8 1.292 (4) N1—C17 1.534 (6)
O5—C15 1.301 (5) C15—H15A 0.9300
C1—C6 1.437 (5) C16—H16A 0.9600
C1—C2 1.463 (5) C16—H16B 0.9600
C7—C6 1.483 (5) C16—H16C 0.9600
C7—H7A 0.9300 C17—H17A 0.9600
C8—C9 1.441 (5) C17—H17B 0.9600
C8—C13 1.465 (5) C17—H17C 0.9600
C9—C10 1.374 (5)
O3—Ni1—O1 92.08 (10) C5—C4—Cl2 121.1 (4)
O3—Ni1—O2 177.03 (10) C3—C4—Cl2 118.0 (3)
O1—Ni1—O2 90.12 (10) C12—C13—C14 114.5 (4)
O3—Ni1—O4 90.51 (10) C12—C13—C8 122.9 (3)
O1—Ni1—O4 176.71 (10) C14—C13—C8 122.7 (3)
O2—Ni1—O4 87.36 (10) C11—C12—C13 119.2 (4)
O3—Ni1—O5 92.13 (10) C11—C12—H12A 120.4
O1—Ni1—O5 88.33 (10) C13—C12—H12A 120.4
O2—Ni1—O5 89.92 (10) C5—C6—C1 119.4 (4)
O4—Ni1—O5 89.55 (11) C5—C6—C7 116.9 (3)
O3—Ni1—O6 92.88 (10) C1—C6—C7 123.7 (3)
O1—Ni1—O6 95.38 (10) C2—C3—C4 118.5 (4)
O2—Ni1—O6 84.93 (10) C2—C3—H3A 120.8
O4—Ni1—O6 86.51 (11) C4—C3—H3A 120.8
O5—Ni1—O6 173.65 (10) O4—C14—C13 127.9 (4)
C7—O2—Ni1 123.9 (2) O4—C14—H14A 116.0
C1—O1—Ni1 126.3 (2) C13—C14—H14A 116.0
C14—O4—Ni1 125.1 (2) C9—C10—C11 121.5 (4)
Ni1—O6—H6A 109.5 C9—C10—H10A 119.3
Ni1—O6—H6B 106 (3) C11—C10—H10A 119.3
H6A—O6—H6B 96.5 C3—C2—C1 123.6 (4)
C8—O3—Ni1 124.5 (2) C3—C2—Cl1 117.6 (3)
C15—O5—Ni1 126.0 (2) C1—C2—Cl1 118.9 (3)
O1—C1—C6 123.1 (3) C15—N1—C16 118.1 (4)
O1—C1—C2 120.6 (3) C15—N1—C17 124.0 (4)
C6—C1—C2 116.3 (3) C16—N1—C17 117.4 (4)
O2—C7—C6 128.0 (3) O5—C15—N1 127.4 (4)
O2—C7—H7A 116.0 O5—C15—H15A 116.3
C6—C7—H7A 116.0 N1—C15—H15A 116.3
O3—C8—C9 119.8 (3) N1—C16—H16A 109.5
O3—C8—C13 125.9 (3) N1—C16—H16B 109.5
C9—C8—C13 114.4 (3) H16A—C16—H16B 109.5
C10—C9—C8 121.9 (4) N1—C16—H16C 109.5
C10—C9—Cl3 119.8 (3) H16A—C16—H16C 109.5
C8—C9—Cl3 118.3 (3) H16B—C16—H16C 109.5
C4—C5—C6 121.4 (4) N1—C17—H17A 109.5
C4—C5—H5A 119.3 N1—C17—H17B 109.5
C6—C5—H5A 119.3 H17A—C17—H17B 109.5
C12—C11—C10 120.1 (4) N1—C17—H17C 109.5
C12—C11—Cl4 119.0 (3) H17A—C17—H17C 109.5
C10—C11—Cl4 120.9 (3) H17B—C17—H17C 109.5
C5—C4—C3 120.9 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O6—H6A···O1i 0.82 1.91 2.714 (3) 168
O6—H6B···O3i 0.83 (4) 2.17 (4) 2.850 (4) 139 (4)
O6—H6B···Cl3i 0.84 (4) 2.67 (4) 3.374 (3) 143 (4)

Symmetry codes: (i) −x, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH2644).

References

  1. Bruker (2004). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Cohen, M. D., Schmidt, G. M. J. & Sonntag, F. I. (1964). J. Chem. Soc. pp. 2000–2013.
  3. Desiraju, G. R. (1989). Crystal Engineering: The Design of Organic Solids Amsterdam: Elsevier.
  4. Mathews, I. I. & Manohar, H. (1991). Acta Cryst. C47, 1621–1624.
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Zaman, B., Udachin, K. A. & Ripmeester, J. A. (2004). Cryst. Growth Des.4, 585–589.
  8. Zhang, S.-H., Li, G.-Z., Feng, X.-Z. & Liu, Z. (2007). Acta Cryst. E63, m1319–m1320.
  9. Zordan, F., Brammer, L. & Sherwood, P. (2005). J. Am. Chem. Soc.127, 5979–5989. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022939/lh2644sup1.cif

e-64-m1068-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022939/lh2644Isup2.hkl

e-64-m1068-Isup2.hkl (194.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES