Abstract
The title complex, [ZnI2(C12H18N2O)], is a mononuclear zinc(II) compound derived from the zwitterionic form of the Schiff base (E)-2-[(3-dimethylaminopropylimino)methyl]phenol. The ZnII atom is four-coordinated by the imine N and phenolate O atoms of the Schiff base ligand, and by two iodide ions in a tetrahedral coordination geometry. In the crystal structure, molecules are linked through intermolecular N—H⋯O hydrogen bonds, forming chains running along the b axis.
Related literature
For background to the chemistry of Schiff base complexes, see: Ali et al. (2008 ▶); Biswas et al. (2008 ▶); Chen et al. (2008 ▶); Darensbourg & Frantz (2007 ▶); Habibi et al. (2007 ▶); Kawamoto et al. (2008 ▶); Lipscomb & Sträter (1996 ▶); Tomat et al. (2007 ▶); Wu et al. (2008 ▶); Yuan et al. (2007 ▶). For related structures, see: Qiu (2006a
▶,b
▶); Wei et al. (2007 ▶); Zhu et al. (2007 ▶).
Experimental
Crystal data
[ZnI2(C12H18N2O)]
M r = 525.45
Orthorhombic,
a = 13.892 (3) Å
b = 16.640 (2) Å
c = 7.372 (3) Å
V = 1704.1 (8) Å3
Z = 4
Mo Kα radiation
μ = 5.06 mm−1
T = 298 (2) K
0.20 × 0.20 × 0.18 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.431, T max = 0.463 (expected range = 0.375–0.402)
12154 measured reflections
3669 independent reflections
3271 reflections with I > 2σ(I)
R int = 0.048
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.100
S = 1.04
3669 reflections
165 parameters
1 restraint
H-atom parameters constrained
Δρmax = 1.82 e Å−3
Δρmin = −0.47 e Å−3
Absolute structure: Flack (1983 ▶), 1660 Friedel pairs
Flack parameter: 0.00 (4)
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023659/sj2522sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023659/sj2522Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Zn1—O1 | 1.952 (4) |
| Zn1—N1 | 2.010 (6) |
| Zn1—I2 | 2.5550 (11) |
| Zn1—I1 | 2.5615 (11) |
| O1—Zn1—N1 | 94.3 (2) |
| O1—Zn1—I2 | 112.17 (16) |
| N1—Zn1—I2 | 113.02 (16) |
| O1—Zn1—I1 | 112.90 (16) |
| N1—Zn1—I1 | 106.74 (18) |
| I2—Zn1—I1 | 115.67 (4) |
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2A⋯O1i | 0.91 | 1.91 | 2.772 (8) | 157 |
Symmetry code: (i)
.
supplementary crystallographic information
Comment
Schiff bases have widely been used as versatile ligands in coordination chemistry (Biswas et al., 2008; Wu et al., 2008; Kawamoto et al., 2008; Ali et al., 2008; Habibi et al., 2007), and their metal complexes are of great interest in many fields (Chen et al., 2008; Yuan et al., 2007; Tomat et al., 2007; Darensbourg & Frantz, 2007). Zinc(II) is an important element in biological systems and functions as the active site of hydrolytic enzymes, such as carboxypeptidase and carbonic anhydrase where it is in a hard-donor coordination environment of nitrogen and oxygen ligands (Lipscomb & Sträter, 1996). In this paper, a new zinc(II) complex, (I), Fig. 1, of the Schiff base ligand (E)-2-[(3-dimethylaminopropylimino)methyl]phenol has been synthesized and structurally characterized.
The ZnII atom in (I) is four-coordinated by the imine N and phenolate O atoms of the zwitterionic form of the Schiff base ligand, and by two I- ions, in a tetrahedral coordination geometry. The coordinate bond lengths (Table 1) are typical and comparable to the corresponding values observed in other similar zinc(II) Schiff base complexes (Zhu et al., 2007; Wei et al., 2007; Qiu, 2006a,b).
In the crystal structure, molecules are linked through intermolecular N–H···O hydrogen bonds (Table 2), forming chains running along the b axis (Fig. 2).
Experimental
The Schiff base compound was prepared by the condensation of equimolar amounts of salicylaldehyde with N,N-dimethylpropane-1,3-diamine in a methanol solution. The complex was prepared by the following method. To an anhydrous methanol solution (5 ml) of ZnI2 (31.9 mg, 0.1 mmol) was added a methanol solution (10 ml) of the Schiff base compound (20.6 mg, 0.1 mmol) with stirring. The mixture was stirred for 30 min at room temperature and filtered. Upon keeping the filtrate in air for a few days, colorless block-shaped crystals were formed at the bottom of the vessel on slow evaporation of the solvent.
Refinement
All H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C–H distances in the range 0.93–0.97 Å, N–H distances of 0.91 Å, and with Uiso(H) = 1.2Ueq(C,N) and 1.5Ueq(methyl C).
Figures
Fig. 1.
The molecular structure of (I) with ellipsoids drawn at the 30% probability level.
Fig. 2.
The crystal packing of (I), viewed along the c axis.
Crystal data
| [ZnI2(C12H18N2O)] | F000 = 992 |
| Mr = 525.45 | Dx = 2.048 Mg m−3 |
| Orthorhombic, Pna21 | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: P 2c -2n | Cell parameters from 4125 reflections |
| a = 13.892 (3) Å | θ = 2.4–25.0º |
| b = 16.640 (2) Å | µ = 5.06 mm−1 |
| c = 7.372 (3) Å | T = 298 (2) K |
| V = 1704.1 (8) Å3 | Block, colorless |
| Z = 4 | 0.20 × 0.20 × 0.18 mm |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 3669 independent reflections |
| Radiation source: fine-focus sealed tube | 3271 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.048 |
| T = 298(2) K | θmax = 27.0º |
| ω scans | θmin = 1.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2004) | h = −17→17 |
| Tmin = 0.431, Tmax = 0.463 | k = −20→21 |
| 12154 measured reflections | l = −9→9 |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0426P)2 + 0.9395P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.100 | (Δ/σ)max = 0.001 |
| S = 1.04 | Δρmax = 1.82 e Å−3 |
| 3669 reflections | Δρmin = −0.46 e Å−3 |
| 165 parameters | Extinction correction: none |
| 1 restraint | Absolute structure: Flack (1983), 1660 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.00 (4) |
| Secondary atom site location: difference Fourier map |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Zn1 | 0.75194 (6) | 0.90239 (4) | 0.72869 (14) | 0.03631 (19) | |
| I1 | 0.58993 (3) | 0.92236 (3) | 0.88834 (9) | 0.04992 (15) | |
| I2 | 0.89258 (4) | 0.98333 (3) | 0.85716 (9) | 0.05741 (18) | |
| N1 | 0.7294 (4) | 0.9228 (3) | 0.4634 (8) | 0.0379 (13) | |
| N2 | 0.8361 (5) | 1.1716 (3) | 0.3321 (11) | 0.0544 (19) | |
| H2A | 0.7857 | 1.2052 | 0.3106 | 0.065* | |
| O1 | 0.7847 (4) | 0.7893 (3) | 0.6946 (7) | 0.0429 (12) | |
| C1 | 0.8309 (5) | 0.7664 (4) | 0.5451 (11) | 0.0385 (16) | |
| C2 | 0.8869 (6) | 0.6960 (5) | 0.5496 (14) | 0.053 (2) | |
| H2 | 0.8923 | 0.6672 | 0.6573 | 0.063* | |
| C3 | 0.9338 (6) | 0.6691 (5) | 0.396 (2) | 0.070 (3) | |
| H3 | 0.9722 | 0.6234 | 0.4030 | 0.084* | |
| C4 | 0.9256 (7) | 0.7066 (5) | 0.2392 (16) | 0.063 (3) | |
| H4 | 0.9575 | 0.6865 | 0.1380 | 0.075* | |
| C5 | 0.8701 (7) | 0.7758 (5) | 0.2225 (15) | 0.063 (2) | |
| H5 | 0.8653 | 0.8019 | 0.1113 | 0.075* | |
| C6 | 0.8209 (5) | 0.8061 (4) | 0.3760 (13) | 0.0422 (15) | |
| C7 | 0.7648 (5) | 0.8782 (4) | 0.3445 (10) | 0.0389 (16) | |
| H7 | 0.7542 | 0.8926 | 0.2243 | 0.047* | |
| C8 | 0.6691 (5) | 0.9919 (4) | 0.4056 (12) | 0.0456 (19) | |
| H8A | 0.6074 | 0.9889 | 0.4667 | 0.055* | |
| H8B | 0.6574 | 0.9880 | 0.2761 | 0.055* | |
| C9 | 0.7143 (6) | 1.0712 (4) | 0.4458 (11) | 0.0459 (19) | |
| H9A | 0.7358 | 1.0721 | 0.5710 | 0.055* | |
| H9B | 0.6668 | 1.1134 | 0.4305 | 0.055* | |
| C10 | 0.7992 (6) | 1.0871 (4) | 0.3217 (13) | 0.049 (2) | |
| H10A | 0.8510 | 1.0505 | 0.3531 | 0.059* | |
| H10B | 0.7802 | 1.0758 | 0.1977 | 0.059* | |
| C11 | 0.8730 (10) | 1.1894 (6) | 0.5117 (19) | 0.100 (5) | |
| H11A | 0.9164 | 1.1476 | 0.5488 | 0.150* | |
| H11B | 0.8205 | 1.1926 | 0.5960 | 0.150* | |
| H11C | 0.9066 | 1.2398 | 0.5092 | 0.150* | |
| C12 | 0.9089 (8) | 1.1848 (6) | 0.186 (2) | 0.101 (5) | |
| H12A | 0.9269 | 1.2405 | 0.1834 | 0.151* | |
| H12B | 0.8819 | 1.1699 | 0.0711 | 0.151* | |
| H12C | 0.9648 | 1.1525 | 0.2099 | 0.151* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.0426 (5) | 0.0328 (3) | 0.0335 (4) | 0.0041 (3) | 0.0026 (4) | 0.0028 (3) |
| I1 | 0.0415 (3) | 0.0491 (2) | 0.0591 (3) | 0.00396 (18) | 0.0126 (3) | −0.0002 (3) |
| I2 | 0.0486 (3) | 0.0603 (3) | 0.0633 (4) | −0.0039 (2) | −0.0084 (3) | −0.0062 (3) |
| N1 | 0.037 (3) | 0.042 (3) | 0.035 (3) | −0.012 (2) | −0.001 (3) | −0.004 (3) |
| N2 | 0.048 (4) | 0.029 (3) | 0.086 (6) | 0.005 (3) | −0.002 (4) | 0.007 (3) |
| O1 | 0.052 (3) | 0.032 (2) | 0.045 (3) | 0.008 (2) | 0.007 (3) | 0.006 (2) |
| C1 | 0.034 (4) | 0.033 (3) | 0.048 (5) | −0.008 (3) | 0.005 (3) | −0.002 (3) |
| C2 | 0.055 (5) | 0.040 (4) | 0.063 (6) | 0.008 (4) | 0.016 (4) | 0.005 (4) |
| C3 | 0.059 (5) | 0.040 (4) | 0.111 (9) | 0.008 (4) | 0.019 (7) | −0.003 (6) |
| C4 | 0.063 (6) | 0.052 (5) | 0.073 (7) | 0.010 (4) | 0.028 (5) | −0.016 (5) |
| C5 | 0.070 (6) | 0.063 (5) | 0.055 (6) | 0.001 (4) | 0.014 (5) | −0.012 (5) |
| C6 | 0.040 (4) | 0.040 (3) | 0.046 (4) | 0.003 (3) | 0.008 (4) | −0.004 (4) |
| C7 | 0.049 (4) | 0.044 (3) | 0.024 (4) | 0.001 (3) | 0.003 (3) | 0.001 (3) |
| C8 | 0.041 (4) | 0.045 (3) | 0.051 (5) | 0.001 (3) | −0.004 (4) | 0.017 (4) |
| C9 | 0.051 (5) | 0.039 (4) | 0.047 (5) | 0.016 (3) | −0.006 (4) | 0.005 (3) |
| C10 | 0.051 (5) | 0.027 (3) | 0.070 (6) | 0.005 (3) | 0.005 (4) | 0.006 (3) |
| C11 | 0.111 (10) | 0.054 (6) | 0.135 (11) | −0.023 (6) | −0.078 (9) | 0.026 (6) |
| C12 | 0.074 (7) | 0.052 (5) | 0.177 (15) | 0.007 (5) | 0.051 (8) | 0.028 (8) |
Geometric parameters (Å, °)
| Zn1—O1 | 1.952 (4) | C5—C6 | 1.415 (12) |
| Zn1—N1 | 2.010 (6) | C5—H5 | 0.9300 |
| Zn1—I2 | 2.5550 (11) | C6—C7 | 1.449 (9) |
| Zn1—I1 | 2.5615 (11) | C7—H7 | 0.9300 |
| N1—C7 | 1.250 (9) | C8—C9 | 1.491 (10) |
| N1—C8 | 1.485 (9) | C8—H8A | 0.9700 |
| N2—C11 | 1.451 (14) | C8—H8B | 0.9700 |
| N2—C12 | 1.493 (15) | C9—C10 | 1.516 (12) |
| N2—C10 | 1.498 (8) | C9—H9A | 0.9700 |
| N2—H2A | 0.9100 | C9—H9B | 0.9700 |
| O1—C1 | 1.331 (9) | C10—H10A | 0.9700 |
| C1—C2 | 1.406 (10) | C10—H10B | 0.9700 |
| C1—C6 | 1.417 (12) | C11—H11A | 0.9600 |
| C2—C3 | 1.384 (15) | C11—H11B | 0.9600 |
| C2—H2 | 0.9300 | C11—H11C | 0.9600 |
| C3—C4 | 1.317 (17) | C12—H12A | 0.9600 |
| C3—H3 | 0.9300 | C12—H12B | 0.9600 |
| C4—C5 | 1.392 (12) | C12—H12C | 0.9600 |
| C4—H4 | 0.9300 | ||
| O1—Zn1—N1 | 94.3 (2) | N1—C7—C6 | 126.2 (7) |
| O1—Zn1—I2 | 112.17 (16) | N1—C7—H7 | 116.9 |
| N1—Zn1—I2 | 113.02 (16) | C6—C7—H7 | 116.9 |
| O1—Zn1—I1 | 112.90 (16) | N1—C8—C9 | 113.0 (6) |
| N1—Zn1—I1 | 106.74 (18) | N1—C8—H8A | 109.0 |
| I2—Zn1—I1 | 115.67 (4) | C9—C8—H8A | 109.0 |
| C7—N1—C8 | 118.8 (7) | N1—C8—H8B | 109.0 |
| C7—N1—Zn1 | 121.4 (5) | C9—C8—H8B | 109.0 |
| C8—N1—Zn1 | 119.9 (5) | H8A—C8—H8B | 107.8 |
| C11—N2—C12 | 112.8 (9) | C8—C9—C10 | 111.2 (6) |
| C11—N2—C10 | 111.1 (7) | C8—C9—H9A | 109.4 |
| C12—N2—C10 | 109.5 (8) | C10—C9—H9A | 109.4 |
| C11—N2—H2A | 107.8 | C8—C9—H9B | 109.4 |
| C12—N2—H2A | 107.8 | C10—C9—H9B | 109.4 |
| C10—N2—H2A | 107.8 | H9A—C9—H9B | 108.0 |
| C1—O1—Zn1 | 119.6 (4) | N2—C10—C9 | 113.5 (6) |
| O1—C1—C2 | 119.0 (7) | N2—C10—H10A | 108.9 |
| O1—C1—C6 | 123.2 (6) | C9—C10—H10A | 108.9 |
| C2—C1—C6 | 117.6 (7) | N2—C10—H10B | 108.9 |
| C3—C2—C1 | 120.7 (9) | C9—C10—H10B | 108.9 |
| C3—C2—H2 | 119.6 | H10A—C10—H10B | 107.7 |
| C1—C2—H2 | 119.6 | N2—C11—H11A | 109.5 |
| C4—C3—C2 | 121.6 (8) | N2—C11—H11B | 109.5 |
| C4—C3—H3 | 119.2 | H11A—C11—H11B | 109.5 |
| C2—C3—H3 | 119.2 | N2—C11—H11C | 109.5 |
| C3—C4—C5 | 121.2 (9) | H11A—C11—H11C | 109.5 |
| C3—C4—H4 | 119.4 | H11B—C11—H11C | 109.5 |
| C5—C4—H4 | 119.4 | N2—C12—H12A | 109.5 |
| C4—C5—C6 | 119.5 (10) | N2—C12—H12B | 109.5 |
| C4—C5—H5 | 120.3 | H12A—C12—H12B | 109.5 |
| C6—C5—H5 | 120.3 | N2—C12—H12C | 109.5 |
| C5—C6—C1 | 119.3 (7) | H12A—C12—H12C | 109.5 |
| C5—C6—C7 | 115.2 (8) | H12B—C12—H12C | 109.5 |
| C1—C6—C7 | 125.4 (7) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2A···O1i | 0.91 | 1.91 | 2.772 (8) | 157 |
Symmetry codes: (i) −x+3/2, y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2522).
References
- Ali, H. M., Mohamed Mustafa, M. I., Rizal, M. R. & Ng, S. W. (2008). Acta Cryst. E64, m718–m719. [DOI] [PMC free article] [PubMed]
- Biswas, C., Drew, M. G. B. & Ghosh, A. (2008). Inorg. Chem.47, 4513–4519. [DOI] [PubMed]
- Bruker (2004). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Chen, Z., Morimoto, H., Matsunaga, S. & Shibasaki, M. (2008). J. Am. Chem. Soc.130, 2170–2171. [DOI] [PubMed]
- Darensbourg, D. J. & Frantz, E. B. (2007). Inorg. Chem.46, 5967–5978. [DOI] [PubMed]
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Habibi, M. H., Askari, E., Chantrapromma, S. & Fun, H.-K. (2007). Acta Cryst. E63, m2905–m2906.
- Kawamoto, T., Nishiwaki, M., Tsunekawa, Y., Nozaki, K. & Konno, T. (2008). Inorg. Chem.47, 3095–3104. [DOI] [PubMed]
- Lipscomb, W. N. & Sträter, N. (1996). Chem. Rev.96, 2375–2434. [DOI] [PubMed]
- Qiu, X.-Y. (2006a). Acta Cryst. E62, m717–m718.
- Qiu, X.-Y. (2006b). Acta Cryst. E62, m2173–m2174.
- Sheldrick, G. M. (2004). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Tomat, E., Cuesta, L., Lynch, V. M. & Sessler, J. L. (2007). Inorg. Chem.46, 6224–6226. [DOI] [PubMed]
- Wei, Y.-J., Wang, F.-W. & Zhu, Q.-Y. (2007). Acta Cryst. E63, m654–m655.
- Wu, J.-C., Liu, S.-X., Keene, T. D., Neels, A., Mereacre, V., Powell, A. K. & Decurtins, S. (2008). Inorg. Chem.47, 3452–3459. [DOI] [PubMed]
- Yuan, M., Zhao, F., Zhang, W., WAng, Z.-M. & Gao, S. (2007). Inorg. Chem.46, 11235–11242. [DOI] [PubMed]
- Zhu, Q.-Y., Wei, Y.-J. & Wang, F.-W. (2007). Acta Cryst. E63, m1431–m1432.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023659/sj2522sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023659/sj2522Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


