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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jul 31;64(Pt 8):m1096–m1097. doi: 10.1107/S1600536808023684

Bis{(E)-2-eth­oxy-6-[2-(ethyl­ammonio)ethyl­iminometh­yl]phenolato}nickel(II) bis(perchlorate)

Xue-Wen Zhu a,*, Xu-Zhao Yang a
PMCID: PMC2962001  PMID: 21203071

Abstract

In the title centrosymmetric mononuclear nickel(II) complex, [Ni(C13H20N2O2)2](ClO4)2, the NiII atom is four-coordinated by the imine N and phenolate O atoms of the zwitterionic forms of two Schiff base ligands in a square-planar coordination geometry. In the crystal structure, mol­ecules are linked through inter­molecular N—H⋯O hydrogen bonds, forming chains running along the a axis.

Related literature

For background to the chemistry of the Schiff base complexes, see: Ali et al. (2008); Biswas et al. (2008); Carlsson et al. (2002, 2004); Chen et al. (2008); Darensbourg & Frantz (2007); Habibi et al. (2007); Kawamoto et al. (2008); Tomat et al. (2007); Wu et al. (2008); Yuan et al. (2007). For related structures, see: Ma et al. (2008); Skovsgaard et al. (2005); Zhao (2007).graphic file with name e-64-m1096-scheme1.jpg

Experimental

Crystal data

  • [Ni(C13H20N2O2)2](ClO4)2

  • M r = 730.23

  • Monoclinic, Inline graphic

  • a = 8.386 (3) Å

  • b = 8.566 (3) Å

  • c = 21.862 (6) Å

  • β = 99.068 (4)°

  • V = 1550.8 (9) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.87 mm−1

  • T = 298 (2) K

  • 0.23 × 0.20 × 0.20 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004) T min = 0.826, T max = 0.846

  • 12509 measured reflections

  • 3363 independent reflections

  • 2770 reflections with I > 2σ(I)

  • R int = 0.041

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.102

  • S = 1.04

  • 3363 reflections

  • 207 parameters

  • H-atom parameters constrained

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.34 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023684/sj2526sup1.cif

e-64-m1096-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023684/sj2526Isup2.hkl

e-64-m1096-Isup2.hkl (165KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected geometric parameters (Å, °).

Ni1—O1 1.836 (2)
Ni1—N1 1.910 (2)
O1i—Ni1—O1 180
O1i—Ni1—N1 87.67 (7)
O1—Ni1—N1 92.33 (7)
N1i—Ni1—N1 180

Symmetry code: (i) Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2B⋯O2i 0.90 2.34 3.013 (3) 131
N2—H2B⋯O1i 0.90 1.97 2.764 (2) 146
N2—H2A⋯O3 0.90 2.56 3.242 (3) 132
N2—H2A⋯O3ii 0.90 2.13 2.916 (3) 145

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Schiff bases have widely been used as versatile ligands in coordination chemistry (Biswas et al., 2008; Wu et al., 2008; Kawamoto et al., 2008; Ali et al., 2008; Habibi et al., 2007), and their metal complexes are of great interest in many fields (Chen et al., 2008; Yuan et al., 2007; Tomat et al., 2007; Darensbourg & Frantz, 2007). Nickel(II) is present in the active sites of urease (Carlsson et al., 2002, 2004). In this paper, a new nickel(II) complex, (I), Fig. 1, with the Schiff base ligand (E)-2-ethoxy-6-((3-(methylamino)propylimino)methyl)phenol has been synthesized and structurally characterized.

Complex (I) consists of a centrosymmetric mononuclear nickel(II) complex cation and two perchlorate anions. The NiII atom in the cation, lies on an inversion centre, with the asymmetric unit made up from one half of the Ni(II) complex and one perchlorate anion. The Ni(II) atom is four-coordinated by two imine N and two phenolate O atoms from two zwitterionic Schiff base ligands in a square-planar coordination geometry. The coordinate bond lengths (Table 1) are typical and comparable to the corresponding values observed in similar nickel(II) Schiff base complexes (Zhao, 2007; Skovsgaard et al., 2005; Ma et al., 2008).

In the crystal structure, molecules are linked through intermolecular N–H···O hydrogen bonds (Table 2), forming chains running along the a axis (Fig. 2).

Experimental

The Schiff base compound was prepared by the condensation of equimolar amounts of 3-ethoxysalicylaldehyde with N-ethylethane-1,2-diamine in a methanol solution. The complex was prepared by the following method. To a methanol solution (5 ml) of Ni(ClO4)2.6H2O (36.6 mg, 0.1 mmol) was added a methanol solution (10 ml) of the Schiff base compound (23.6 mg, 0.1 mmol) with stirring. The mixture was stirred for 30 min at room temperature and filtered. Upon keeping the filtrate in air for a few days, red block-shaped crystals formed at the bottom of the vessel on slow evaporation of the solvent.

Refinement

All H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C–H distances in the range 0.93–0.97 Å, N–H distances of 0.90 Å, and with Uiso(H) = 1.2Ueq(C,N) and 1.5Ueq(methyl C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) with ellipsoids drawn at the 30% probability level. Unlabelled atoms are at the symmetry positions 2 - x, 1 - y, - z.

Fig. 2.

Fig. 2.

The crystal packing of (I), viewed along the c axis.

Crystal data

[Ni(C13H20N2O2)2](ClO4)2 F000 = 764
Mr = 730.23 Dx = 1.564 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 3252 reflections
a = 8.386 (3) Å θ = 2.5–25.4º
b = 8.566 (3) Å µ = 0.87 mm1
c = 21.862 (6) Å T = 298 (2) K
β = 99.068 (4)º Block, red
V = 1550.8 (9) Å3 0.23 × 0.20 × 0.20 mm
Z = 2

Data collection

Bruker APEXII CCD area-detector diffractometer 3363 independent reflections
Radiation source: fine-focus sealed tube 2770 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.041
T = 298(2) K θmax = 27.0º
ω scans θmin = 1.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 2004) h = −10→10
Tmin = 0.826, Tmax = 0.846 k = −10→10
12509 measured reflections l = −27→27

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039 H-atom parameters constrained
wR(F2) = 0.102   w = 1/[σ2(Fo2) + (0.0512P)2 + 0.4599P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max = 0.001
3363 reflections Δρmax = 0.28 e Å3
207 parameters Δρmin = −0.34 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ni1 1.0000 0.5000 0.0000 0.02592 (13)
Cl1 0.39043 (7) 0.71469 (7) 0.09059 (3) 0.03882 (17)
O1 1.06353 (18) 0.41002 (18) 0.07614 (7) 0.0333 (4)
O2 1.1550 (2) 0.2125 (2) 0.16406 (8) 0.0451 (4)
O3 0.4539 (3) 0.6169 (2) 0.04665 (9) 0.0624 (6)
O4 0.5075 (2) 0.8315 (2) 0.11174 (9) 0.0547 (5)
O5 0.3594 (3) 0.6194 (2) 0.14062 (9) 0.0652 (6)
O6 0.2480 (3) 0.7874 (3) 0.06108 (13) 0.0790 (7)
N1 0.8973 (2) 0.6697 (2) 0.03503 (8) 0.0272 (4)
N2 0.6314 (2) 0.7051 (2) −0.07021 (9) 0.0342 (4)
H2A 0.6031 0.6259 −0.0471 0.041*
H2B 0.7139 0.6718 −0.0886 0.041*
C1 0.8960 (3) 0.5512 (3) 0.13583 (10) 0.0307 (5)
C2 1.0022 (3) 0.4303 (3) 0.12705 (9) 0.0281 (5)
C3 1.0473 (3) 0.3232 (3) 0.17637 (10) 0.0322 (5)
C4 0.9828 (3) 0.3361 (3) 0.22998 (10) 0.0385 (6)
H4 1.0109 0.2640 0.2616 0.046*
C5 0.8759 (3) 0.4560 (3) 0.23756 (11) 0.0436 (6)
H5 0.8327 0.4634 0.2741 0.052*
C6 0.8344 (3) 0.5623 (3) 0.19183 (11) 0.0399 (6)
H6 0.7644 0.6433 0.1976 0.048*
C7 0.8602 (3) 0.6692 (3) 0.09004 (10) 0.0308 (5)
H7 0.8036 0.7555 0.1010 0.037*
C8 0.8632 (3) 0.8182 (2) 0.00079 (11) 0.0317 (5)
H8A 0.9308 0.8242 −0.0313 0.038*
H8B 0.8923 0.9044 0.0291 0.038*
C9 0.6887 (3) 0.8363 (3) −0.02871 (11) 0.0333 (5)
H9A 0.6219 0.8436 0.0036 0.040*
H9B 0.6765 0.9328 −0.0522 0.040*
C10 0.4917 (3) 0.7422 (3) −0.11922 (13) 0.0487 (7)
H10A 0.5245 0.8215 −0.1464 0.058*
H10B 0.4629 0.6493 −0.1439 0.058*
C11 0.3475 (3) 0.7982 (4) −0.09446 (14) 0.0568 (8)
H11A 0.3152 0.7211 −0.0670 0.085*
H11B 0.2610 0.8158 −0.1281 0.085*
H11C 0.3728 0.8940 −0.0723 0.085*
C12 1.1937 (3) 0.0850 (3) 0.20663 (12) 0.0465 (6)
H12A 1.2110 0.1255 0.2486 0.056*
H12B 1.2937 0.0372 0.1992 0.056*
C13 1.0661 (5) −0.0355 (4) 0.2011 (2) 0.0790 (11)
H13A 0.9690 0.0091 0.2116 0.119*
H13B 1.1007 −0.1201 0.2288 0.119*
H13C 1.0458 −0.0737 0.1593 0.119*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.0286 (2) 0.0257 (2) 0.0236 (2) 0.00323 (15) 0.00463 (15) 0.00429 (15)
Cl1 0.0470 (4) 0.0310 (3) 0.0392 (3) −0.0058 (2) 0.0091 (3) −0.0041 (2)
O1 0.0407 (9) 0.0352 (9) 0.0255 (7) 0.0112 (7) 0.0096 (7) 0.0078 (6)
O2 0.0555 (11) 0.0445 (10) 0.0376 (9) 0.0190 (8) 0.0145 (8) 0.0175 (8)
O3 0.1038 (17) 0.0375 (10) 0.0533 (12) −0.0086 (11) 0.0357 (11) −0.0095 (9)
O4 0.0541 (12) 0.0456 (11) 0.0639 (13) −0.0157 (9) 0.0075 (9) −0.0132 (9)
O5 0.1053 (17) 0.0525 (12) 0.0438 (11) −0.0208 (12) 0.0300 (11) −0.0021 (9)
O6 0.0493 (13) 0.0656 (14) 0.116 (2) −0.0016 (11) −0.0058 (12) 0.0108 (14)
N1 0.0264 (9) 0.0250 (9) 0.0292 (9) −0.0002 (7) 0.0015 (7) 0.0020 (7)
N2 0.0319 (10) 0.0294 (10) 0.0408 (11) 0.0026 (8) 0.0038 (8) −0.0007 (8)
C1 0.0301 (11) 0.0345 (12) 0.0277 (11) −0.0006 (9) 0.0048 (9) −0.0003 (9)
C2 0.0290 (11) 0.0310 (11) 0.0244 (10) −0.0028 (9) 0.0043 (9) 0.0013 (9)
C3 0.0323 (12) 0.0354 (12) 0.0284 (11) −0.0017 (10) 0.0030 (9) 0.0047 (9)
C4 0.0413 (14) 0.0464 (14) 0.0271 (11) −0.0036 (11) 0.0034 (10) 0.0079 (10)
C5 0.0465 (15) 0.0580 (16) 0.0288 (12) 0.0011 (13) 0.0132 (11) 0.0006 (11)
C6 0.0391 (13) 0.0466 (14) 0.0356 (13) 0.0061 (11) 0.0107 (10) −0.0031 (11)
C7 0.0292 (11) 0.0299 (12) 0.0333 (12) 0.0024 (9) 0.0048 (9) −0.0033 (9)
C8 0.0359 (12) 0.0224 (11) 0.0362 (12) −0.0029 (9) 0.0033 (10) 0.0010 (9)
C9 0.0374 (13) 0.0232 (11) 0.0387 (12) 0.0043 (9) 0.0042 (10) 0.0019 (9)
C10 0.0474 (15) 0.0519 (16) 0.0429 (14) −0.0002 (13) −0.0052 (12) 0.0011 (12)
C11 0.0354 (14) 0.0620 (19) 0.068 (2) −0.0005 (13) −0.0059 (13) 0.0023 (15)
C12 0.0508 (16) 0.0441 (15) 0.0445 (14) 0.0123 (12) 0.0072 (12) 0.0191 (12)
C13 0.078 (2) 0.0510 (19) 0.107 (3) −0.0058 (18) 0.011 (2) 0.010 (2)

Geometric parameters (Å, °)

Ni1—O1i 1.836 (2) C4—H4 0.9300
Ni1—O1 1.836 (2) C5—C6 1.357 (4)
Ni1—N1i 1.910 (2) C5—H5 0.9300
Ni1—N1 1.910 (2) C6—H6 0.9300
Cl1—O6 1.410 (2) C7—H7 0.9300
Cl1—O5 1.421 (2) C8—C9 1.512 (3)
Cl1—O4 1.4268 (18) C8—H8A 0.9700
Cl1—O3 1.4384 (19) C8—H8B 0.9700
O1—C2 1.309 (2) C9—H9A 0.9700
O2—C3 1.365 (3) C9—H9B 0.9700
O2—C12 1.439 (3) C10—C11 1.481 (4)
N1—C7 1.289 (3) C10—H10A 0.9700
N1—C8 1.481 (3) C10—H10B 0.9700
N2—C9 1.476 (3) C11—H11A 0.9600
N2—C10 1.492 (3) C11—H11B 0.9600
N2—H2A 0.9000 C11—H11C 0.9600
N2—H2B 0.9000 C12—C13 1.478 (4)
C1—C2 1.399 (3) C12—H12A 0.9700
C1—C6 1.405 (3) C12—H12B 0.9700
C1—C7 1.421 (3) C13—H13A 0.9600
C2—C3 1.421 (3) C13—H13B 0.9600
C3—C4 1.370 (3) C13—H13C 0.9600
C4—C5 1.390 (4)
O1i—Ni1—O1 180.0 C1—C6—H6 119.7
O1i—Ni1—N1i 92.33 (7) N1—C7—C1 127.2 (2)
O1—Ni1—N1i 87.67 (7) N1—C7—H7 116.4
O1i—Ni1—N1 87.67 (7) C1—C7—H7 116.4
O1—Ni1—N1 92.33 (7) N1—C8—C9 113.63 (18)
N1i—Ni1—N1 180.0 N1—C8—H8A 108.8
O6—Cl1—O5 111.19 (15) C9—C8—H8A 108.8
O6—Cl1—O4 109.16 (13) N1—C8—H8B 108.8
O5—Cl1—O4 110.69 (13) C9—C8—H8B 108.8
O6—Cl1—O3 109.13 (15) H8A—C8—H8B 107.7
O5—Cl1—O3 108.15 (12) N2—C9—C8 112.54 (18)
O4—Cl1—O3 108.46 (13) N2—C9—H9A 109.1
C2—O1—Ni1 128.20 (14) C8—C9—H9A 109.1
C3—O2—C12 119.27 (19) N2—C9—H9B 109.1
C7—N1—C8 114.76 (18) C8—C9—H9B 109.1
C7—N1—Ni1 124.19 (15) H9A—C9—H9B 107.8
C8—N1—Ni1 120.95 (14) C11—C10—N2 113.6 (2)
C9—N2—C10 114.96 (19) C11—C10—H10A 108.8
C9—N2—H2A 108.5 N2—C10—H10A 108.8
C10—N2—H2A 108.5 C11—C10—H10B 108.8
C9—N2—H2B 108.5 N2—C10—H10B 108.8
C10—N2—H2B 108.5 H10A—C10—H10B 107.7
H2A—N2—H2B 107.5 C10—C11—H11A 109.5
C2—C1—C6 119.9 (2) C10—C11—H11B 109.5
C2—C1—C7 119.90 (19) H11A—C11—H11B 109.5
C6—C1—C7 120.0 (2) C10—C11—H11C 109.5
O1—C2—C1 123.96 (19) H11A—C11—H11C 109.5
O1—C2—C3 117.8 (2) H11B—C11—H11C 109.5
C1—C2—C3 118.25 (19) O2—C12—C13 113.0 (2)
O2—C3—C4 126.0 (2) O2—C12—H12A 109.0
O2—C3—C2 113.84 (19) C13—C12—H12A 109.0
C4—C3—C2 120.2 (2) O2—C12—H12B 109.0
C3—C4—C5 120.7 (2) C13—C12—H12B 109.0
C3—C4—H4 119.7 H12A—C12—H12B 107.8
C5—C4—H4 119.7 C12—C13—H13A 109.5
C6—C5—C4 120.2 (2) C12—C13—H13B 109.5
C6—C5—H5 119.9 H13A—C13—H13B 109.5
C4—C5—H5 119.9 C12—C13—H13C 109.5
C5—C6—C1 120.7 (2) H13A—C13—H13C 109.5
C5—C6—H6 119.7 H13B—C13—H13C 109.5

Symmetry codes: (i) −x+2, −y+1, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2B···O2i 0.90 2.34 3.013 (3) 131
N2—H2B···O1i 0.90 1.97 2.764 (2) 146
N2—H2A···O3 0.90 2.56 3.242 (3) 132
N2—H2A···O3ii 0.90 2.13 2.916 (3) 145

Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+1, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2526).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023684/sj2526sup1.cif

e-64-m1096-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023684/sj2526Isup2.hkl

e-64-m1096-Isup2.hkl (165KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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