Abstract
In the title centrosymmetric mononuclear nickel(II) complex, [Ni(C13H20N2O2)2](ClO4)2, the NiII atom is four-coordinated by the imine N and phenolate O atoms of the zwitterionic forms of two Schiff base ligands in a square-planar coordination geometry. In the crystal structure, molecules are linked through intermolecular N—H⋯O hydrogen bonds, forming chains running along the a axis.
Related literature
For background to the chemistry of the Schiff base complexes, see: Ali et al. (2008 ▶); Biswas et al. (2008 ▶); Carlsson et al. (2002 ▶, 2004 ▶); Chen et al. (2008 ▶); Darensbourg & Frantz (2007 ▶); Habibi et al. (2007 ▶); Kawamoto et al. (2008 ▶); Tomat et al. (2007 ▶); Wu et al. (2008 ▶); Yuan et al. (2007 ▶). For related structures, see: Ma et al. (2008 ▶); Skovsgaard et al. (2005 ▶); Zhao (2007 ▶).
Experimental
Crystal data
[Ni(C13H20N2O2)2](ClO4)2
M r = 730.23
Monoclinic,
a = 8.386 (3) Å
b = 8.566 (3) Å
c = 21.862 (6) Å
β = 99.068 (4)°
V = 1550.8 (9) Å3
Z = 2
Mo Kα radiation
μ = 0.87 mm−1
T = 298 (2) K
0.23 × 0.20 × 0.20 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.826, T max = 0.846
12509 measured reflections
3363 independent reflections
2770 reflections with I > 2σ(I)
R int = 0.041
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.102
S = 1.04
3363 reflections
207 parameters
H-atom parameters constrained
Δρmax = 0.28 e Å−3
Δρmin = −0.34 e Å−3
Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023684/sj2526sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023684/sj2526Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected geometric parameters (Å, °).
| Ni1—O1 | 1.836 (2) |
| Ni1—N1 | 1.910 (2) |
| O1i—Ni1—O1 | 180 |
| O1i—Ni1—N1 | 87.67 (7) |
| O1—Ni1—N1 | 92.33 (7) |
| N1i—Ni1—N1 | 180 |
Symmetry code: (i)
.
Table 2. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2B⋯O2i | 0.90 | 2.34 | 3.013 (3) | 131 |
| N2—H2B⋯O1i | 0.90 | 1.97 | 2.764 (2) | 146 |
| N2—H2A⋯O3 | 0.90 | 2.56 | 3.242 (3) | 132 |
| N2—H2A⋯O3ii | 0.90 | 2.13 | 2.916 (3) | 145 |
Symmetry codes: (i)
; (ii)
.
supplementary crystallographic information
Comment
Schiff bases have widely been used as versatile ligands in coordination chemistry (Biswas et al., 2008; Wu et al., 2008; Kawamoto et al., 2008; Ali et al., 2008; Habibi et al., 2007), and their metal complexes are of great interest in many fields (Chen et al., 2008; Yuan et al., 2007; Tomat et al., 2007; Darensbourg & Frantz, 2007). Nickel(II) is present in the active sites of urease (Carlsson et al., 2002, 2004). In this paper, a new nickel(II) complex, (I), Fig. 1, with the Schiff base ligand (E)-2-ethoxy-6-((3-(methylamino)propylimino)methyl)phenol has been synthesized and structurally characterized.
Complex (I) consists of a centrosymmetric mononuclear nickel(II) complex cation and two perchlorate anions. The NiII atom in the cation, lies on an inversion centre, with the asymmetric unit made up from one half of the Ni(II) complex and one perchlorate anion. The Ni(II) atom is four-coordinated by two imine N and two phenolate O atoms from two zwitterionic Schiff base ligands in a square-planar coordination geometry. The coordinate bond lengths (Table 1) are typical and comparable to the corresponding values observed in similar nickel(II) Schiff base complexes (Zhao, 2007; Skovsgaard et al., 2005; Ma et al., 2008).
In the crystal structure, molecules are linked through intermolecular N–H···O hydrogen bonds (Table 2), forming chains running along the a axis (Fig. 2).
Experimental
The Schiff base compound was prepared by the condensation of equimolar amounts of 3-ethoxysalicylaldehyde with N-ethylethane-1,2-diamine in a methanol solution. The complex was prepared by the following method. To a methanol solution (5 ml) of Ni(ClO4)2.6H2O (36.6 mg, 0.1 mmol) was added a methanol solution (10 ml) of the Schiff base compound (23.6 mg, 0.1 mmol) with stirring. The mixture was stirred for 30 min at room temperature and filtered. Upon keeping the filtrate in air for a few days, red block-shaped crystals formed at the bottom of the vessel on slow evaporation of the solvent.
Refinement
All H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C–H distances in the range 0.93–0.97 Å, N–H distances of 0.90 Å, and with Uiso(H) = 1.2Ueq(C,N) and 1.5Ueq(methyl C).
Figures
Fig. 1.
The molecular structure of (I) with ellipsoids drawn at the 30% probability level. Unlabelled atoms are at the symmetry positions 2 - x, 1 - y, - z.
Fig. 2.
The crystal packing of (I), viewed along the c axis.
Crystal data
| [Ni(C13H20N2O2)2](ClO4)2 | F000 = 764 |
| Mr = 730.23 | Dx = 1.564 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 3252 reflections |
| a = 8.386 (3) Å | θ = 2.5–25.4º |
| b = 8.566 (3) Å | µ = 0.87 mm−1 |
| c = 21.862 (6) Å | T = 298 (2) K |
| β = 99.068 (4)º | Block, red |
| V = 1550.8 (9) Å3 | 0.23 × 0.20 × 0.20 mm |
| Z = 2 |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 3363 independent reflections |
| Radiation source: fine-focus sealed tube | 2770 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.041 |
| T = 298(2) K | θmax = 27.0º |
| ω scans | θmin = 1.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2004) | h = −10→10 |
| Tmin = 0.826, Tmax = 0.846 | k = −10→10 |
| 12509 measured reflections | l = −27→27 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.039 | H-atom parameters constrained |
| wR(F2) = 0.102 | w = 1/[σ2(Fo2) + (0.0512P)2 + 0.4599P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max = 0.001 |
| 3363 reflections | Δρmax = 0.28 e Å−3 |
| 207 parameters | Δρmin = −0.34 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Ni1 | 1.0000 | 0.5000 | 0.0000 | 0.02592 (13) | |
| Cl1 | 0.39043 (7) | 0.71469 (7) | 0.09059 (3) | 0.03882 (17) | |
| O1 | 1.06353 (18) | 0.41002 (18) | 0.07614 (7) | 0.0333 (4) | |
| O2 | 1.1550 (2) | 0.2125 (2) | 0.16406 (8) | 0.0451 (4) | |
| O3 | 0.4539 (3) | 0.6169 (2) | 0.04665 (9) | 0.0624 (6) | |
| O4 | 0.5075 (2) | 0.8315 (2) | 0.11174 (9) | 0.0547 (5) | |
| O5 | 0.3594 (3) | 0.6194 (2) | 0.14062 (9) | 0.0652 (6) | |
| O6 | 0.2480 (3) | 0.7874 (3) | 0.06108 (13) | 0.0790 (7) | |
| N1 | 0.8973 (2) | 0.6697 (2) | 0.03503 (8) | 0.0272 (4) | |
| N2 | 0.6314 (2) | 0.7051 (2) | −0.07021 (9) | 0.0342 (4) | |
| H2A | 0.6031 | 0.6259 | −0.0471 | 0.041* | |
| H2B | 0.7139 | 0.6718 | −0.0886 | 0.041* | |
| C1 | 0.8960 (3) | 0.5512 (3) | 0.13583 (10) | 0.0307 (5) | |
| C2 | 1.0022 (3) | 0.4303 (3) | 0.12705 (9) | 0.0281 (5) | |
| C3 | 1.0473 (3) | 0.3232 (3) | 0.17637 (10) | 0.0322 (5) | |
| C4 | 0.9828 (3) | 0.3361 (3) | 0.22998 (10) | 0.0385 (6) | |
| H4 | 1.0109 | 0.2640 | 0.2616 | 0.046* | |
| C5 | 0.8759 (3) | 0.4560 (3) | 0.23756 (11) | 0.0436 (6) | |
| H5 | 0.8327 | 0.4634 | 0.2741 | 0.052* | |
| C6 | 0.8344 (3) | 0.5623 (3) | 0.19183 (11) | 0.0399 (6) | |
| H6 | 0.7644 | 0.6433 | 0.1976 | 0.048* | |
| C7 | 0.8602 (3) | 0.6692 (3) | 0.09004 (10) | 0.0308 (5) | |
| H7 | 0.8036 | 0.7555 | 0.1010 | 0.037* | |
| C8 | 0.8632 (3) | 0.8182 (2) | 0.00079 (11) | 0.0317 (5) | |
| H8A | 0.9308 | 0.8242 | −0.0313 | 0.038* | |
| H8B | 0.8923 | 0.9044 | 0.0291 | 0.038* | |
| C9 | 0.6887 (3) | 0.8363 (3) | −0.02871 (11) | 0.0333 (5) | |
| H9A | 0.6219 | 0.8436 | 0.0036 | 0.040* | |
| H9B | 0.6765 | 0.9328 | −0.0522 | 0.040* | |
| C10 | 0.4917 (3) | 0.7422 (3) | −0.11922 (13) | 0.0487 (7) | |
| H10A | 0.5245 | 0.8215 | −0.1464 | 0.058* | |
| H10B | 0.4629 | 0.6493 | −0.1439 | 0.058* | |
| C11 | 0.3475 (3) | 0.7982 (4) | −0.09446 (14) | 0.0568 (8) | |
| H11A | 0.3152 | 0.7211 | −0.0670 | 0.085* | |
| H11B | 0.2610 | 0.8158 | −0.1281 | 0.085* | |
| H11C | 0.3728 | 0.8940 | −0.0723 | 0.085* | |
| C12 | 1.1937 (3) | 0.0850 (3) | 0.20663 (12) | 0.0465 (6) | |
| H12A | 1.2110 | 0.1255 | 0.2486 | 0.056* | |
| H12B | 1.2937 | 0.0372 | 0.1992 | 0.056* | |
| C13 | 1.0661 (5) | −0.0355 (4) | 0.2011 (2) | 0.0790 (11) | |
| H13A | 0.9690 | 0.0091 | 0.2116 | 0.119* | |
| H13B | 1.1007 | −0.1201 | 0.2288 | 0.119* | |
| H13C | 1.0458 | −0.0737 | 0.1593 | 0.119* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ni1 | 0.0286 (2) | 0.0257 (2) | 0.0236 (2) | 0.00323 (15) | 0.00463 (15) | 0.00429 (15) |
| Cl1 | 0.0470 (4) | 0.0310 (3) | 0.0392 (3) | −0.0058 (2) | 0.0091 (3) | −0.0041 (2) |
| O1 | 0.0407 (9) | 0.0352 (9) | 0.0255 (7) | 0.0112 (7) | 0.0096 (7) | 0.0078 (6) |
| O2 | 0.0555 (11) | 0.0445 (10) | 0.0376 (9) | 0.0190 (8) | 0.0145 (8) | 0.0175 (8) |
| O3 | 0.1038 (17) | 0.0375 (10) | 0.0533 (12) | −0.0086 (11) | 0.0357 (11) | −0.0095 (9) |
| O4 | 0.0541 (12) | 0.0456 (11) | 0.0639 (13) | −0.0157 (9) | 0.0075 (9) | −0.0132 (9) |
| O5 | 0.1053 (17) | 0.0525 (12) | 0.0438 (11) | −0.0208 (12) | 0.0300 (11) | −0.0021 (9) |
| O6 | 0.0493 (13) | 0.0656 (14) | 0.116 (2) | −0.0016 (11) | −0.0058 (12) | 0.0108 (14) |
| N1 | 0.0264 (9) | 0.0250 (9) | 0.0292 (9) | −0.0002 (7) | 0.0015 (7) | 0.0020 (7) |
| N2 | 0.0319 (10) | 0.0294 (10) | 0.0408 (11) | 0.0026 (8) | 0.0038 (8) | −0.0007 (8) |
| C1 | 0.0301 (11) | 0.0345 (12) | 0.0277 (11) | −0.0006 (9) | 0.0048 (9) | −0.0003 (9) |
| C2 | 0.0290 (11) | 0.0310 (11) | 0.0244 (10) | −0.0028 (9) | 0.0043 (9) | 0.0013 (9) |
| C3 | 0.0323 (12) | 0.0354 (12) | 0.0284 (11) | −0.0017 (10) | 0.0030 (9) | 0.0047 (9) |
| C4 | 0.0413 (14) | 0.0464 (14) | 0.0271 (11) | −0.0036 (11) | 0.0034 (10) | 0.0079 (10) |
| C5 | 0.0465 (15) | 0.0580 (16) | 0.0288 (12) | 0.0011 (13) | 0.0132 (11) | 0.0006 (11) |
| C6 | 0.0391 (13) | 0.0466 (14) | 0.0356 (13) | 0.0061 (11) | 0.0107 (10) | −0.0031 (11) |
| C7 | 0.0292 (11) | 0.0299 (12) | 0.0333 (12) | 0.0024 (9) | 0.0048 (9) | −0.0033 (9) |
| C8 | 0.0359 (12) | 0.0224 (11) | 0.0362 (12) | −0.0029 (9) | 0.0033 (10) | 0.0010 (9) |
| C9 | 0.0374 (13) | 0.0232 (11) | 0.0387 (12) | 0.0043 (9) | 0.0042 (10) | 0.0019 (9) |
| C10 | 0.0474 (15) | 0.0519 (16) | 0.0429 (14) | −0.0002 (13) | −0.0052 (12) | 0.0011 (12) |
| C11 | 0.0354 (14) | 0.0620 (19) | 0.068 (2) | −0.0005 (13) | −0.0059 (13) | 0.0023 (15) |
| C12 | 0.0508 (16) | 0.0441 (15) | 0.0445 (14) | 0.0123 (12) | 0.0072 (12) | 0.0191 (12) |
| C13 | 0.078 (2) | 0.0510 (19) | 0.107 (3) | −0.0058 (18) | 0.011 (2) | 0.010 (2) |
Geometric parameters (Å, °)
| Ni1—O1i | 1.836 (2) | C4—H4 | 0.9300 |
| Ni1—O1 | 1.836 (2) | C5—C6 | 1.357 (4) |
| Ni1—N1i | 1.910 (2) | C5—H5 | 0.9300 |
| Ni1—N1 | 1.910 (2) | C6—H6 | 0.9300 |
| Cl1—O6 | 1.410 (2) | C7—H7 | 0.9300 |
| Cl1—O5 | 1.421 (2) | C8—C9 | 1.512 (3) |
| Cl1—O4 | 1.4268 (18) | C8—H8A | 0.9700 |
| Cl1—O3 | 1.4384 (19) | C8—H8B | 0.9700 |
| O1—C2 | 1.309 (2) | C9—H9A | 0.9700 |
| O2—C3 | 1.365 (3) | C9—H9B | 0.9700 |
| O2—C12 | 1.439 (3) | C10—C11 | 1.481 (4) |
| N1—C7 | 1.289 (3) | C10—H10A | 0.9700 |
| N1—C8 | 1.481 (3) | C10—H10B | 0.9700 |
| N2—C9 | 1.476 (3) | C11—H11A | 0.9600 |
| N2—C10 | 1.492 (3) | C11—H11B | 0.9600 |
| N2—H2A | 0.9000 | C11—H11C | 0.9600 |
| N2—H2B | 0.9000 | C12—C13 | 1.478 (4) |
| C1—C2 | 1.399 (3) | C12—H12A | 0.9700 |
| C1—C6 | 1.405 (3) | C12—H12B | 0.9700 |
| C1—C7 | 1.421 (3) | C13—H13A | 0.9600 |
| C2—C3 | 1.421 (3) | C13—H13B | 0.9600 |
| C3—C4 | 1.370 (3) | C13—H13C | 0.9600 |
| C4—C5 | 1.390 (4) | ||
| O1i—Ni1—O1 | 180.0 | C1—C6—H6 | 119.7 |
| O1i—Ni1—N1i | 92.33 (7) | N1—C7—C1 | 127.2 (2) |
| O1—Ni1—N1i | 87.67 (7) | N1—C7—H7 | 116.4 |
| O1i—Ni1—N1 | 87.67 (7) | C1—C7—H7 | 116.4 |
| O1—Ni1—N1 | 92.33 (7) | N1—C8—C9 | 113.63 (18) |
| N1i—Ni1—N1 | 180.0 | N1—C8—H8A | 108.8 |
| O6—Cl1—O5 | 111.19 (15) | C9—C8—H8A | 108.8 |
| O6—Cl1—O4 | 109.16 (13) | N1—C8—H8B | 108.8 |
| O5—Cl1—O4 | 110.69 (13) | C9—C8—H8B | 108.8 |
| O6—Cl1—O3 | 109.13 (15) | H8A—C8—H8B | 107.7 |
| O5—Cl1—O3 | 108.15 (12) | N2—C9—C8 | 112.54 (18) |
| O4—Cl1—O3 | 108.46 (13) | N2—C9—H9A | 109.1 |
| C2—O1—Ni1 | 128.20 (14) | C8—C9—H9A | 109.1 |
| C3—O2—C12 | 119.27 (19) | N2—C9—H9B | 109.1 |
| C7—N1—C8 | 114.76 (18) | C8—C9—H9B | 109.1 |
| C7—N1—Ni1 | 124.19 (15) | H9A—C9—H9B | 107.8 |
| C8—N1—Ni1 | 120.95 (14) | C11—C10—N2 | 113.6 (2) |
| C9—N2—C10 | 114.96 (19) | C11—C10—H10A | 108.8 |
| C9—N2—H2A | 108.5 | N2—C10—H10A | 108.8 |
| C10—N2—H2A | 108.5 | C11—C10—H10B | 108.8 |
| C9—N2—H2B | 108.5 | N2—C10—H10B | 108.8 |
| C10—N2—H2B | 108.5 | H10A—C10—H10B | 107.7 |
| H2A—N2—H2B | 107.5 | C10—C11—H11A | 109.5 |
| C2—C1—C6 | 119.9 (2) | C10—C11—H11B | 109.5 |
| C2—C1—C7 | 119.90 (19) | H11A—C11—H11B | 109.5 |
| C6—C1—C7 | 120.0 (2) | C10—C11—H11C | 109.5 |
| O1—C2—C1 | 123.96 (19) | H11A—C11—H11C | 109.5 |
| O1—C2—C3 | 117.8 (2) | H11B—C11—H11C | 109.5 |
| C1—C2—C3 | 118.25 (19) | O2—C12—C13 | 113.0 (2) |
| O2—C3—C4 | 126.0 (2) | O2—C12—H12A | 109.0 |
| O2—C3—C2 | 113.84 (19) | C13—C12—H12A | 109.0 |
| C4—C3—C2 | 120.2 (2) | O2—C12—H12B | 109.0 |
| C3—C4—C5 | 120.7 (2) | C13—C12—H12B | 109.0 |
| C3—C4—H4 | 119.7 | H12A—C12—H12B | 107.8 |
| C5—C4—H4 | 119.7 | C12—C13—H13A | 109.5 |
| C6—C5—C4 | 120.2 (2) | C12—C13—H13B | 109.5 |
| C6—C5—H5 | 119.9 | H13A—C13—H13B | 109.5 |
| C4—C5—H5 | 119.9 | C12—C13—H13C | 109.5 |
| C5—C6—C1 | 120.7 (2) | H13A—C13—H13C | 109.5 |
| C5—C6—H6 | 119.7 | H13B—C13—H13C | 109.5 |
Symmetry codes: (i) −x+2, −y+1, −z.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2B···O2i | 0.90 | 2.34 | 3.013 (3) | 131 |
| N2—H2B···O1i | 0.90 | 1.97 | 2.764 (2) | 146 |
| N2—H2A···O3 | 0.90 | 2.56 | 3.242 (3) | 132 |
| N2—H2A···O3ii | 0.90 | 2.13 | 2.916 (3) | 145 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+1, −y+1, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2526).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023684/sj2526sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023684/sj2526Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


