Abstract
The title Schiff base compound, C13H9BrClN3O2·CH4O, was derived from the condensation reaction of 3-bromo-5-chlorosalicylaldehyde with isonicotinohydrazide. The dihedral angle between the benzene and pyridine rings is 5.9 (2)°. In the crystal structure, molecules are linked through N—H⋯O, O—H⋯O, and O—H⋯Br intermolecular hydrogen bonds, forming dimers and chains. There is also an intramolecular O—H⋯N hydrogen bond.
Related literature
For related structures, see: Tang, (2006 ▶); Tang, (2007a
▶,b
▶,c
▶,d
▶). For reference structural data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C13H9BrClN3O2·CH4O
M r = 386.63
Triclinic,
a = 7.531 (1) Å
b = 8.735 (1) Å
c = 12.130 (2) Å
α = 80.853 (2)°
β = 77.781 (2)°
γ = 86.721 (2)°
V = 769.73 (19) Å3
Z = 2
Mo Kα radiation
μ = 2.86 mm−1
T = 298 (2) K
0.32 × 0.32 × 0.30 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.461, T max = 0.481 (expected range = 0.407–0.424)
4529 measured reflections
3254 independent reflections
2438 reflections with I > 2σ(I)
R int = 0.018
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.093
S = 1.01
3254 reflections
205 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.44 e Å−3
Δρmin = −0.36 e Å−3
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808019648/at2582sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019648/at2582Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯O3i | 0.890 (10) | 2.005 (15) | 2.876 (4) | 166 (4) |
| O3—H3⋯Br1 | 0.82 | 3.05 | 3.641 (3) | 131 |
| O3—H3⋯O1 | 0.82 | 2.62 | 3.268 (4) | 137 |
| O3—H3⋯O1ii | 0.82 | 2.55 | 3.114 (4) | 127 |
| O1—H1⋯N1 | 0.82 | 1.87 | 2.590 (3) | 146 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
Financial support from the Jiaying University research fund is gratefully acknowledged.
supplementary crystallographic information
Comment
Recently, the author has reported the structures of several Schiff base compounds (Tang, 2006; Tang, 2007a,b,c,d) and, in continuation of work in this area, reports herein the crystal structure of the title new Schiff base compound, (I).
In the title compound (Fig. 1), the dihedral angle between the benzene ring and the pyridine ring is 5.9 (2)°. The torsion angles C1—C7—N1—N2, C7—N1—N2—C8, and N1—N2—C8—C9 are 0.4 (2), 2.3 (2), and 1.9 (2)°, respectively. All the bond lengths are within normal values (Allen et al., 1987).
In the crystal structure of the compound, molecules are linked through N–H···O, O–H···O, and O–H···Br intermolecular hydrogen bonds (Table 1), forming dimers (Fig. 2).
Experimental
3-Bromo-5-chlorosalicylaldehyde (0.1 mmol, 23.5 mg) and isonicotinohydrazide (0.1 mmol, 13.7 mg) were dissolved in a methanol solution (20 ml). The mixture was stirred at reflux for 10 min to give a clear colourless solution. Colourless block-like crystals of the compound were formed by slow evaporation of the solvent over several days.
Refinement
H2 was located from a difference Fourier map and refined isotropically, with Uiso restrained to 0.08Å2. Other H atoms were constrained to ideal geometries, with d(C–H) = 0.93–0.96 Å, d(O–H) = 0.82 Å, and with Uiso(H) = 1.2Ueq(C), 1.5Ueq(C14, O1 and O3).
Figures
Fig. 1.
The molecular structure of the compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
Molecular packing of (I) with hydrogen bonds drawn as dashed lines.
Crystal data
| C13H9BrClN3O2·C1H4O1 | Z = 2 |
| Mr = 386.63 | F000 = 388 |
| Triclinic, P1 | Dx = 1.668 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
| a = 7.531 (1) Å | Cell parameters from 1404 reflections |
| b = 8.735 (1) Å | θ = 2.5–24.3º |
| c = 12.130 (2) Å | µ = 2.86 mm−1 |
| α = 80.853 (2)º | T = 298 (2) K |
| β = 77.781 (2)º | Block, colourless |
| γ = 86.721 (2)º | 0.32 × 0.32 × 0.30 mm |
| V = 769.73 (19) Å3 |
Data collection
| Bruker SMART CCD area-detector diffractometer | 3254 independent reflections |
| Radiation source: fine-focus sealed tube | 2438 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.018 |
| T = 298(2) K | θmax = 27.0º |
| ω scans | θmin = 2.4º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −9→9 |
| Tmin = 0.461, Tmax = 0.481 | k = −11→10 |
| 4529 measured reflections | l = −15→13 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.093 | w = 1/[σ2(Fo2) + (0.0424P)2 + 0.2117P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.01 | (Δ/σ)max < 0.001 |
| 3254 reflections | Δρmax = 0.44 e Å−3 |
| 205 parameters | Δρmin = −0.36 e Å−3 |
| 1 restraint | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Br1 | 1.13987 (5) | 0.60600 (4) | 0.27243 (3) | 0.04953 (14) | |
| Cl1 | 1.14281 (14) | 0.21720 (11) | −0.04331 (7) | 0.0585 (3) | |
| O1 | 0.9336 (4) | 0.3429 (3) | 0.42960 (18) | 0.0492 (6) | |
| H1 | 0.8805 | 0.2694 | 0.4718 | 0.074* | |
| O2 | 0.6850 (4) | 0.1108 (3) | 0.6960 (2) | 0.0613 (7) | |
| O3 | 0.7162 (4) | 0.6702 (3) | 0.4708 (2) | 0.0648 (7) | |
| H3 | 0.8129 | 0.6213 | 0.4678 | 0.097* | |
| N1 | 0.7910 (4) | 0.0712 (3) | 0.4821 (2) | 0.0422 (7) | |
| N2 | 0.7009 (4) | −0.0439 (3) | 0.5622 (2) | 0.0435 (7) | |
| N3 | 0.3580 (4) | −0.3481 (4) | 0.9325 (3) | 0.0541 (8) | |
| C1 | 0.9409 (4) | 0.1661 (4) | 0.2938 (3) | 0.0376 (7) | |
| C2 | 0.9789 (4) | 0.3099 (3) | 0.3219 (2) | 0.0356 (7) | |
| C3 | 1.0695 (4) | 0.4184 (3) | 0.2357 (3) | 0.0371 (7) | |
| C4 | 1.1193 (4) | 0.3917 (3) | 0.1240 (3) | 0.0383 (7) | |
| H4 | 1.1788 | 0.4670 | 0.0674 | 0.046* | |
| C5 | 1.0792 (4) | 0.2518 (4) | 0.0983 (3) | 0.0388 (7) | |
| C6 | 0.9935 (4) | 0.1387 (4) | 0.1807 (3) | 0.0406 (8) | |
| H6 | 0.9703 | 0.0439 | 0.1615 | 0.049* | |
| C7 | 0.8466 (4) | 0.0454 (4) | 0.3797 (3) | 0.0423 (8) | |
| H7 | 0.8271 | −0.0499 | 0.3599 | 0.051* | |
| C8 | 0.6508 (4) | −0.0112 (4) | 0.6708 (3) | 0.0392 (7) | |
| C9 | 0.5474 (4) | −0.1341 (3) | 0.7577 (3) | 0.0353 (7) | |
| C10 | 0.5137 (5) | −0.2802 (4) | 0.7393 (3) | 0.0432 (8) | |
| H10 | 0.5524 | −0.3098 | 0.6675 | 0.052* | |
| C11 | 0.4218 (5) | −0.3815 (4) | 0.8288 (3) | 0.0533 (9) | |
| H11 | 0.4032 | −0.4806 | 0.8155 | 0.064* | |
| C12 | 0.3884 (5) | −0.2064 (5) | 0.9486 (3) | 0.0601 (10) | |
| H12 | 0.3433 | −0.1788 | 1.0204 | 0.072* | |
| C13 | 0.4825 (5) | −0.0977 (4) | 0.8658 (3) | 0.0507 (9) | |
| H13 | 0.5023 | −0.0005 | 0.8825 | 0.061* | |
| C14 | 0.6322 (7) | 0.6375 (5) | 0.3861 (4) | 0.0809 (14) | |
| H14A | 0.5114 | 0.6820 | 0.3967 | 0.121* | |
| H14B | 0.6264 | 0.5272 | 0.3902 | 0.121* | |
| H14C | 0.7007 | 0.6808 | 0.3127 | 0.121* | |
| H2 | 0.689 (6) | −0.136 (2) | 0.543 (3) | 0.080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Br1 | 0.0660 (3) | 0.0388 (2) | 0.0409 (2) | −0.01820 (16) | 0.00010 (16) | −0.00617 (14) |
| Cl1 | 0.0847 (7) | 0.0584 (5) | 0.0301 (4) | −0.0171 (5) | 0.0016 (4) | −0.0118 (4) |
| O1 | 0.0672 (17) | 0.0464 (14) | 0.0289 (12) | −0.0191 (12) | 0.0035 (11) | −0.0019 (10) |
| O2 | 0.088 (2) | 0.0386 (13) | 0.0523 (15) | −0.0236 (13) | 0.0019 (13) | −0.0050 (11) |
| O3 | 0.073 (2) | 0.0651 (18) | 0.0574 (17) | −0.0025 (15) | −0.0088 (15) | −0.0168 (14) |
| N1 | 0.0448 (16) | 0.0384 (15) | 0.0373 (16) | −0.0112 (12) | −0.0042 (12) | 0.0104 (12) |
| N2 | 0.0547 (18) | 0.0384 (15) | 0.0331 (15) | −0.0216 (14) | −0.0030 (13) | 0.0063 (12) |
| N3 | 0.059 (2) | 0.0546 (19) | 0.0415 (17) | −0.0192 (15) | 0.0025 (14) | 0.0047 (14) |
| C1 | 0.0376 (18) | 0.0377 (17) | 0.0344 (17) | −0.0055 (14) | −0.0053 (14) | 0.0028 (13) |
| C2 | 0.0383 (18) | 0.0375 (17) | 0.0292 (16) | −0.0064 (14) | −0.0041 (13) | −0.0017 (13) |
| C3 | 0.0421 (19) | 0.0339 (16) | 0.0331 (16) | −0.0103 (14) | −0.0024 (14) | −0.0028 (13) |
| C4 | 0.0418 (19) | 0.0351 (17) | 0.0322 (16) | −0.0098 (14) | 0.0003 (14) | 0.0048 (13) |
| C5 | 0.0451 (19) | 0.0439 (18) | 0.0256 (15) | −0.0084 (15) | −0.0029 (14) | −0.0028 (13) |
| C6 | 0.046 (2) | 0.0361 (17) | 0.0405 (18) | −0.0097 (14) | −0.0095 (15) | −0.0049 (14) |
| C7 | 0.047 (2) | 0.0376 (17) | 0.0394 (19) | −0.0157 (15) | −0.0047 (15) | 0.0022 (14) |
| C8 | 0.0424 (19) | 0.0341 (17) | 0.0374 (18) | −0.0089 (14) | −0.0042 (14) | 0.0037 (14) |
| C9 | 0.0334 (17) | 0.0346 (16) | 0.0349 (17) | −0.0086 (13) | −0.0030 (13) | 0.0014 (13) |
| C10 | 0.052 (2) | 0.0387 (18) | 0.0335 (17) | −0.0125 (15) | 0.0030 (15) | −0.0025 (14) |
| C11 | 0.062 (2) | 0.0433 (19) | 0.049 (2) | −0.0178 (18) | 0.0004 (18) | 0.0006 (16) |
| C12 | 0.068 (3) | 0.072 (3) | 0.035 (2) | −0.022 (2) | 0.0059 (18) | −0.0078 (18) |
| C13 | 0.061 (2) | 0.0446 (19) | 0.043 (2) | −0.0167 (17) | 0.0042 (17) | −0.0090 (16) |
| C14 | 0.095 (4) | 0.077 (3) | 0.078 (3) | −0.012 (3) | −0.025 (3) | −0.019 (3) |
Geometric parameters (Å, °)
| Br1—C3 | 1.897 (3) | C4—C5 | 1.373 (4) |
| Cl1—C5 | 1.753 (3) | C4—H4 | 0.9300 |
| O1—C2 | 1.351 (3) | C5—C6 | 1.370 (4) |
| O1—H1 | 0.8200 | C6—H6 | 0.9300 |
| O2—C8 | 1.209 (4) | C7—H7 | 0.9300 |
| O3—C14 | 1.388 (5) | C8—C9 | 1.503 (4) |
| O3—H3 | 0.8200 | C9—C10 | 1.377 (4) |
| N1—C7 | 1.276 (4) | C9—C13 | 1.380 (4) |
| N1—N2 | 1.380 (3) | C10—C11 | 1.374 (4) |
| N2—C8 | 1.363 (4) | C10—H10 | 0.9300 |
| N2—H2 | 0.890 (10) | C11—H11 | 0.9300 |
| N3—C11 | 1.320 (5) | C12—C13 | 1.373 (5) |
| N3—C12 | 1.323 (5) | C12—H12 | 0.9300 |
| C1—C6 | 1.400 (4) | C13—H13 | 0.9300 |
| C1—C2 | 1.412 (4) | C14—H14A | 0.9600 |
| C1—C7 | 1.457 (4) | C14—H14B | 0.9600 |
| C2—C3 | 1.383 (4) | C14—H14C | 0.9600 |
| C3—C4 | 1.380 (4) | ||
| C2—O1—H1 | 109.5 | N1—C7—H7 | 120.2 |
| C14—O3—H3 | 109.5 | C1—C7—H7 | 120.2 |
| C7—N1—N2 | 118.9 (3) | O2—C8—N2 | 122.1 (3) |
| C8—N2—N1 | 116.0 (3) | O2—C8—C9 | 121.6 (3) |
| C8—N2—H2 | 124 (3) | N2—C8—C9 | 116.3 (3) |
| N1—N2—H2 | 120 (3) | C10—C9—C13 | 117.2 (3) |
| C11—N3—C12 | 115.9 (3) | C10—C9—C8 | 125.7 (3) |
| C6—C1—C2 | 119.4 (3) | C13—C9—C8 | 117.0 (3) |
| C6—C1—C7 | 118.9 (3) | C11—C10—C9 | 118.7 (3) |
| C2—C1—C7 | 121.6 (3) | C11—C10—H10 | 120.6 |
| O1—C2—C3 | 119.5 (3) | C9—C10—H10 | 120.6 |
| O1—C2—C1 | 122.3 (3) | N3—C11—C10 | 124.7 (3) |
| C3—C2—C1 | 118.2 (3) | N3—C11—H11 | 117.6 |
| C4—C3—C2 | 122.3 (3) | C10—C11—H11 | 117.6 |
| C4—C3—Br1 | 118.4 (2) | N3—C12—C13 | 124.1 (3) |
| C2—C3—Br1 | 119.3 (2) | N3—C12—H12 | 118.0 |
| C5—C4—C3 | 118.6 (3) | C13—C12—H12 | 118.0 |
| C5—C4—H4 | 120.7 | C12—C13—C9 | 119.3 (3) |
| C3—C4—H4 | 120.7 | C12—C13—H13 | 120.4 |
| C6—C5—C4 | 121.6 (3) | C9—C13—H13 | 120.4 |
| C6—C5—Cl1 | 119.6 (2) | O3—C14—H14A | 109.5 |
| C4—C5—Cl1 | 118.8 (2) | O3—C14—H14B | 109.5 |
| C5—C6—C1 | 119.9 (3) | H14A—C14—H14B | 109.5 |
| C5—C6—H6 | 120.1 | O3—C14—H14C | 109.5 |
| C1—C6—H6 | 120.1 | H14A—C14—H14C | 109.5 |
| N1—C7—C1 | 119.6 (3) | H14B—C14—H14C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···O3i | 0.890 (10) | 2.005 (15) | 2.876 (4) | 166 (4) |
| O3—H3···Br1 | 0.82 | 3.05 | 3.641 (3) | 131 |
| O3—H3···O1 | 0.82 | 2.62 | 3.268 (4) | 137 |
| O3—H3···O1ii | 0.82 | 2.55 | 3.114 (4) | 127 |
| O1—H1···N1 | 0.82 | 1.87 | 2.590 (3) | 146 |
Symmetry codes: (i) x, y−1, z; (ii) −x+2, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: AT2582).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bruker (2002). SAINT and SMART Bruker AXS Inc., Madison, Wisconsin, USA.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Tang, C.-B. (2006). Acta Cryst. E62, m2629–m2630.
- Tang, C.-B. (2007a). Acta Cryst. E63, m2654.
- Tang, C.-B. (2007b). Acta Cryst. E63, m2785–m2786.
- Tang, C.-B. (2007c). Acta Cryst. E63, o4545.
- Tang, C.-B. (2007d). Acta Cryst. E63, o4841.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808019648/at2582sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019648/at2582Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


