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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jul 5;64(Pt 8):o1400. doi: 10.1107/S1600536808019867

3-Ethyl-4-[(E)-2-methyl­benzyl­idene­amino]-1H-1,2,4-triazole-5(4H)-thione

Shan-Heng Wang a, Ying-Li Xu a, Pei-Jin Xie a, Wen-Long Wang a, Shang Shan a,*
PMCID: PMC2962033  PMID: 21203120

Abstract

Crystals of the title compound, C12H14N4S, were obtained from a condensation reaction of 4-amino-3-ethyl-1H-1,2,4-triazole-5(4H)-thione and 2-methyl­benzaldehyde. In the mol­ecular structure, there is a short N=C double bond [1.255 (2) Å], and the benzene and triazole rings are located on opposite sites of this double bond. The two rings are approximately parallel to each other, the dihedral angle being 1.75 (11)°. A partially overlapped arrangement is observed between the nearly parallel triazole and benzene rings of adjacent mol­ecules; the perpendicular distance of the centroid of the triazole ring from the benzene ring is 3.482 Å, indicating the existence of π–π stacking in the crystal structure.

Related literature

For general background, see: Okabe et al. (1993); Shan et al. (2003). For related structures, see: Fan et al. (2008); Shan et al. (2004, 2008). For the thickness of the aromatic ring, see: Cotton & Wilkinson (1972).graphic file with name e-64-o1400-scheme1.jpg

Experimental

Crystal data

  • C12H14N4S

  • M r = 246.33

  • Monoclinic, Inline graphic

  • a = 7.7255 (15) Å

  • b = 15.411 (3) Å

  • c = 10.685 (2) Å

  • β = 101.032 (12)°

  • V = 1248.7 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 295 (2) K

  • 0.32 × 0.28 × 0.24 mm

Data collection

  • Rigaku R-AXIS RAPID IP diffractometer

  • Absorption correction: none

  • 12354 measured reflections

  • 2860 independent reflections

  • 1777 reflections with I > 2σ(I)

  • R int = 0.061

Refinement

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.120

  • S = 1.03

  • 2860 reflections

  • 156 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: PROCESS-AUTO (Rigaku, 1998); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019867/xu2434sup1.cif

e-64-o1400-sup1.cif (15.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019867/xu2434Isup2.hkl

e-64-o1400-Isup2.hkl (137.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯Si 0.93 2.37 3.2899 (19) 169
C5—H5⋯S 0.93 2.54 3.239 (2) 132

Symmetry code: (i) Inline graphic.

Acknowledgments

The work was supported by the Natural Science Foundation of Zhejiang Province, China (grant No. M203027).

supplementary crystallographic information

Comment

Since some hydrazone derivatives have shown to be potential DNA damaging and mutagenic agents (Okabe et al., 1993), a series of new hydrazone derivatives have been prepared in our laboratory (Shan et al., 2003). As part of the ongoing investigation, the title compound has recently been prepared and its crystal structure is reported here.

The molecular structure of the title compound is shown in Fig. 1. The N4—C5 bond distance of 1.255 (2) Å is significantly shorter than C═N bond distances found in related hydrazone structures, i.g. 1.295 (2) Å in (E)-3-methoxyacetophenone 4-nitrophenylhydrazone (Fan et al., 2008), 1.2977 (18) Å in (E)-2-furyl methyl ketone 2,4-dinitrophenylhydrazone (Shan et al., 2008) and 1.293 (2) Å in benzylideneacetone 2,4-dinitrophenylhydrazone (Shan et al., 2004). The benzene and triazole rings are located on the opposite sites of the N4═C5 double bond, the molecule assumes an E-configuration.

The molecule displays a nearly coplanar structure except for methyl H atoms, the maximum atomic deviation for non-H atom is 0.1457 (18) Å (N4), and the atomic deviations for ehtyl C3 and C4 atoms are 0.011 (2) and 0.037 (2) Å, respectively. The methine group is linked to the triazolethione via intramolecular C5—H5···S hydrogen bonding (Fig. 1 and Table 1). The adjacent molecules are linked together with N1—H1N···S hydrogen bonding (Table 1), forming the centro-symmetric supramolecular dimer.

A partially overlapped arrangement is observed between the nearly parallel triazole ring and benzene ring of the adjacent molecule [dihedral angle 1.75 (11)°] (Fig. 2), the perpendicular distance of the centroid of the N3-triazole ring on the C6ii-benzene ring is 3.482 Å and the perpendicular distance of the centroid of the C6ii-benzene ring on the N3-triazole ring is 3.504 Å [symmetry code: (ii) 1 + x, y, z], these are significantly shorter than the van der Waals thickness of the aromatic ring (3.7 Å; Cotton & Wilkinson, 1972) and suggest the existence of π-π stacking in the crystal structure.

Experimental

4-Amino-3-ethyl-1H-1,2,4-triazole-5(4H)-thione (0.29 g, 2 mmol) was dissolved in ethanol (25 ml), then acetic acid (1 ml) was added slowly to the ethanol solution with stirring. The solution was heated at 333 K for several minutes until the solution cleared. 2-Methylbenzaldehyde (0.24 g, 2 mmol) was then dropped slowly into the solution, and the mixture was refluxed for 5 h. After the solution had cooled to room temperature yellow powder crystals appeared. The powder crystals were separated and washed with water three times. Single crystals of the title compound were obtained by recrystallization from an absolute ethanol solution.

Refinement

H atom bonded to N atom was located in a difference Fourier map and refined as riding in its as-found relative position with Uiso(H) = 1.5Ueq(N). Methyl H atoms were placed in calculated positions with C—H = 0.96 Å and the torsion angles were refined to fit the electron density, Uiso(H) = 1.5Ueq(C). Other H atoms were placed in calculated positions with C—H = 0.93 (aromatic) and 0.97 Å (methylene), and refined in riding mode with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with 40% probability displacement ellipsoids for non-H atoms. Dashed line indicates hydrogen bonding.

Fig. 2.

Fig. 2.

A diagram showing π-π stacking between aromatic rings [symmetry code: (ii) 1 + x, y, z].

Crystal data

C12H14N4S F000 = 520
Mr = 246.33 Dx = 1.310 Mg m3
Monoclinic, P21/n Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 4278 reflections
a = 7.7255 (15) Å θ = 2.8–24.5º
b = 15.411 (3) Å µ = 0.24 mm1
c = 10.685 (2) Å T = 295 (2) K
β = 101.032 (12)º Prism, yellow
V = 1248.7 (4) Å3 0.32 × 0.28 × 0.24 mm
Z = 4

Data collection

Rigaku R-AXIS RAPID IP diffractometer 2860 independent reflections
Radiation source: fine-focus sealed tube 1777 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.061
Detector resolution: 10.00 pixels mm-1 θmax = 27.6º
T = 295(2) K θmin = 2.6º
ω scans h = −9→10
Absorption correction: none k = −20→16
12354 measured reflections l = −13→13

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047 H-atom parameters constrained
wR(F2) = 0.121   w = 1/[σ2(Fo2) + (0.0463P)2 + 0.2633P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
2860 reflections Δρmax = 0.18 e Å3
156 parameters Δρmin = −0.21 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S 0.70986 (7) −0.00644 (3) 0.39484 (6) 0.0542 (2)
N1 0.9437 (2) 0.12184 (11) 0.47565 (18) 0.0453 (5)
H1N 1.0320 0.0826 0.5095 0.068*
N2 0.9697 (2) 0.20996 (11) 0.47450 (18) 0.0449 (5)
N3 0.70093 (19) 0.17368 (10) 0.37970 (15) 0.0356 (4)
N4 0.5343 (2) 0.19429 (11) 0.31007 (17) 0.0424 (5)
C1 0.7829 (3) 0.09601 (13) 0.4175 (2) 0.0388 (5)
C2 0.8200 (3) 0.24045 (13) 0.4152 (2) 0.0387 (5)
C3 0.7750 (3) 0.33278 (13) 0.3886 (2) 0.0486 (6)
H3A 0.6760 0.3482 0.4279 0.058*
H3B 0.7391 0.3408 0.2973 0.058*
C4 0.9288 (3) 0.39305 (14) 0.4383 (3) 0.0627 (7)
H4A 0.9624 0.3868 0.5291 0.094*
H4B 0.8942 0.4520 0.4180 0.094*
H4C 1.0270 0.3784 0.3991 0.094*
C5 0.4118 (3) 0.13985 (14) 0.3022 (2) 0.0443 (6)
H5 0.4330 0.0856 0.3402 0.053*
C6 0.2346 (3) 0.16241 (14) 0.2325 (2) 0.0412 (5)
C7 0.1079 (3) 0.09783 (15) 0.1958 (2) 0.0484 (6)
C8 −0.0589 (3) 0.1238 (2) 0.1313 (2) 0.0631 (7)
H8 −0.1454 0.0820 0.1064 0.076*
C9 −0.0980 (3) 0.2091 (2) 0.1040 (3) 0.0688 (8)
H9 −0.2105 0.2245 0.0618 0.083*
C10 0.0279 (3) 0.27235 (18) 0.1386 (2) 0.0621 (7)
H10 0.0019 0.3302 0.1182 0.074*
C11 0.1935 (3) 0.24901 (15) 0.2038 (2) 0.0502 (6)
H11 0.2783 0.2916 0.2288 0.060*
C12 0.1452 (3) 0.00349 (16) 0.2212 (3) 0.0700 (8)
H12A 0.2246 −0.0169 0.1687 0.105*
H12B 0.0369 −0.0287 0.2019 0.105*
H12C 0.1978 −0.0045 0.3094 0.105*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S 0.0374 (3) 0.0352 (3) 0.0829 (5) −0.0002 (2) −0.0066 (3) −0.0011 (3)
N1 0.0309 (9) 0.0361 (9) 0.0641 (12) 0.0015 (7) −0.0027 (8) 0.0017 (9)
N2 0.0339 (9) 0.0374 (10) 0.0598 (12) −0.0031 (7) −0.0003 (8) 0.0001 (9)
N3 0.0273 (8) 0.0326 (8) 0.0443 (10) 0.0001 (7) 0.0000 (7) 0.0000 (7)
N4 0.0305 (9) 0.0416 (10) 0.0507 (11) 0.0016 (8) −0.0031 (8) 0.0013 (8)
C1 0.0304 (10) 0.0400 (11) 0.0444 (12) 0.0025 (8) 0.0028 (9) 0.0000 (9)
C2 0.0333 (11) 0.0368 (11) 0.0449 (12) −0.0042 (8) 0.0042 (9) −0.0016 (9)
C3 0.0468 (12) 0.0380 (12) 0.0586 (14) −0.0010 (10) 0.0044 (11) 0.0004 (11)
C4 0.0662 (16) 0.0398 (13) 0.0762 (18) −0.0139 (11) −0.0015 (14) 0.0007 (12)
C5 0.0336 (11) 0.0393 (11) 0.0568 (14) 0.0026 (9) 0.0011 (10) 0.0017 (10)
C6 0.0297 (10) 0.0505 (12) 0.0423 (12) 0.0011 (9) 0.0042 (9) 0.0005 (10)
C7 0.0349 (11) 0.0594 (15) 0.0493 (14) −0.0029 (10) 0.0042 (10) −0.0021 (11)
C8 0.0336 (12) 0.090 (2) 0.0625 (17) −0.0080 (13) 0.0014 (12) −0.0046 (15)
C9 0.0353 (13) 0.104 (2) 0.0637 (17) 0.0157 (15) −0.0003 (12) 0.0089 (16)
C10 0.0513 (14) 0.0725 (17) 0.0615 (16) 0.0261 (13) 0.0086 (13) 0.0125 (14)
C11 0.0413 (12) 0.0545 (14) 0.0538 (14) 0.0100 (10) 0.0069 (11) 0.0033 (11)
C12 0.0550 (15) 0.0620 (17) 0.089 (2) −0.0124 (13) 0.0029 (14) −0.0045 (15)

Geometric parameters (Å, °)

S—C1 1.679 (2) C5—C6 1.469 (3)
N1—C1 1.338 (2) C5—H5 0.9300
N1—N2 1.373 (2) C6—C11 1.393 (3)
N1—H1N 0.9314 C6—C7 1.399 (3)
N2—C2 1.296 (2) C7—C8 1.398 (3)
N3—C1 1.378 (2) C7—C12 1.497 (3)
N3—C2 1.384 (2) C8—C9 1.369 (4)
N3—N4 1.395 (2) C8—H8 0.9300
N4—C5 1.255 (2) C9—C10 1.376 (4)
C2—C3 1.479 (3) C9—H9 0.9300
C3—C4 1.522 (3) C10—C11 1.382 (3)
C3—H3A 0.9700 C10—H10 0.9300
C3—H3B 0.9700 C11—H11 0.9300
C4—H4A 0.9600 C12—H12A 0.9600
C4—H4B 0.9600 C12—H12B 0.9600
C4—H4C 0.9600 C12—H12C 0.9600
C1—N1—N2 114.48 (16) N4—C5—H5 120.2
C1—N1—H1N 122.2 C6—C5—H5 120.2
N2—N1—H1N 123.2 C11—C6—C7 120.14 (19)
C2—N2—N1 104.15 (15) C11—C6—C5 119.32 (19)
C1—N3—C2 108.74 (15) C7—C6—C5 120.53 (19)
C1—N3—N4 132.83 (15) C8—C7—C6 117.7 (2)
C2—N3—N4 118.30 (15) C8—C7—C12 119.6 (2)
C5—N4—N3 119.38 (17) C6—C7—C12 122.71 (19)
N1—C1—N3 102.21 (16) C9—C8—C7 121.7 (2)
N1—C1—S 127.10 (15) C9—C8—H8 119.2
N3—C1—S 130.66 (14) C7—C8—H8 119.2
N2—C2—N3 110.40 (17) C8—C9—C10 120.5 (2)
N2—C2—C3 126.69 (18) C8—C9—H9 119.8
N3—C2—C3 122.91 (17) C10—C9—H9 119.8
C2—C3—C4 112.41 (18) C9—C10—C11 119.3 (2)
C2—C3—H3A 109.1 C9—C10—H10 120.3
C4—C3—H3A 109.1 C11—C10—H10 120.3
C2—C3—H3B 109.1 C10—C11—C6 120.7 (2)
C4—C3—H3B 109.1 C10—C11—H11 119.6
H3A—C3—H3B 107.9 C6—C11—H11 119.6
C3—C4—H4A 109.5 C7—C12—H12A 109.5
C3—C4—H4B 109.5 C7—C12—H12B 109.5
H4A—C4—H4B 109.5 H12A—C12—H12B 109.5
C3—C4—H4C 109.5 C7—C12—H12C 109.5
H4A—C4—H4C 109.5 H12A—C12—H12C 109.5
H4B—C4—H4C 109.5 H12B—C12—H12C 109.5
N4—C5—C6 119.54 (19)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1N···Si 0.93 2.37 3.2899 (19) 169
C5—H5···S 0.93 2.54 3.239 (2) 132

Symmetry codes: (i) −x+2, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU2434).

References

  1. Altomare, A., Cascarano, G., Giacovazzo, C. & Guagliardi, A. (1993). J. Appl. Cryst.26, 343–350.
  2. Cotton, F. A. & Wilkinson, G. (1972). Advances in Inorganic Chemistry, p. 120. New York: John Wiley & Sons.
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  5. Farrugia, L. J. (1999). J. Appl. Cryst.32, 837–838.
  6. Okabe, N., Nakamura, T. & Fukuda, H. (1993). Acta Cryst. C49, 1678–1680.
  7. Rigaku (1998). PROCESS-AUTO Rigaku Corporation, Tokyo, Japan.
  8. Rigaku/MSC (2002). CrystalStructure Rigaku/MSC, The Woodlands, Texas, USA.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019867/xu2434sup1.cif

e-64-o1400-sup1.cif (15.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019867/xu2434Isup2.hkl

e-64-o1400-Isup2.hkl (137.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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