Abstract
In the crystal structure of the title compound, rac-7-oxabicyclo[2.2.1]heptane-2,3-dicarboxylic acid–2-aminobenzothiazole (1/1), C8H10O5·C7H6N2S, molecules of each component are linked into centrosymmetric dimers by intermolecular N—H⋯O hydrogen bonds. These dimers are connected by O—H⋯O hydrogen bonds into a chain along the b axis. In addition, π–π interactions between aromatic heterocycles occur [centroid–centroid distance of 3.4709 Å and interplanar spacing of 3.4374 Å between symmetry-related benzothiazole ring systems.
Related literature
For related literature, see: Liu et al. (2002 ▶).
Experimental
Crystal data
C8H10O5·C7H6N2S
M r = 336.36
Triclinic,
a = 8.3082 (1) Å
b = 9.0428 (1) Å
c = 11.0438 (2) Å
α = 67.1546 (8)°
β = 83.0101 (8)°
γ = 86.9193 (9)°
V = 758.92 (2) Å3
Z = 2
Mo Kα radiation
μ = 0.24 mm−1
T = 296 (2) K
0.43 × 0.27 × 0.16 mm
Data collection
Bruker APEXII area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.92, T max = 0.96
11829 measured reflections
3416 independent reflections
2675 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.056
wR(F 2) = 0.159
S = 1.06
3416 reflections
214 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.67 e Å−3
Δρmin = −1.05 e Å−3
Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808015365/kp2168sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015365/kp2168Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1A⋯O1i | 0.86 | 2.13 | 2.953 (3) | 161 |
N1—H1B⋯O5 | 0.86 | 2.29 | 3.061 (3) | 150 |
N1—H1B⋯O4 | 0.86 | 2.38 | 2.991 (3) | 128 |
O2—H2⋯O4ii | 0.836 (18) | 1.868 (18) | 2.700 (2) | 174 (3) |
O3—H3⋯N2i | 0.854 (18) | 1.758 (19) | 2.611 (2) | 176 (4) |
Symmetry codes: (i) ; (ii)
.
Acknowledgments
The authors acknowledge financial support from the Natural Science Foundation of Zhejiang Province, China (grant No. Y407301).
supplementary crystallographic information
Comment
7-Oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride (norcantharidin), a traditional Chinese drug, has great anti-cancer activity. In order to prepare compounds with pronounced anti-cancer activity, some derivatives were synthesized (Liu et al., 2002). 7-oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride can react with 2-aminobenzothiazole to form an acylamide acid derivative which has strong anti-cancer activity. However, a crystal suitable for X-ray diffraction was obtained during the synthesis unexpectedly.
The crystal structure of the title compound (I) is characterized by alternating molecules of 7-oxabicyclo[2.2.1]heptane-2,3-dicarboxylic acid and 2-aminobenzothiazole, linked by N—H···O and O—H···O hydrogen bonds. The centrosymmetric dimer composed of two 2-aminobenzothiazole and two acids is generated by bifurcated hydrogen bonds of amino group of 2-aminobenzothiazole and the acid component (N1—H1B···O4 and N1—H1B···O5, O3—H3···N2 and N1—H1A···O1). These dimers are connected into a chain by hydrogen bonds O2—H2···O4. Furthermore, there are short distances [centroid separation of 3.4709 Å and interplanar spacing of 3.4374 Å] between the benzothiazole-ring planes and the symmetry-related planes at (-x + 1,-y + 1,-z; -x + 1,-y + 2,-z) of adjacent chains, implying π···π interactions (Fig. 2). In the molecule, the conformation of 7-oxabicyclo[2.2.1]heptane ring is discussed as follows, the six-membered ring adopts a boat conformation and the two oxygen-bearing five-membered heterocycles are in an envelope conformation.
Experimental
7-Oxabicyclo[2.2.1]heptane-2,3-dicarboxylic anhydride and 2-aminobenzothiazole were dissolved in acetonitrile and the mixture was stirred for 2 h at room temperature. The precipitate has been proved to exhibit anticancer activity. However, colourless crystals of (I) were obtained in the filtrate after several days, unexpectedly.
Refinement
The structure was solved by direct methods and successive Fourier difference synthesis. The H atoms bonded to C and Natoms were positioned geometrically and refined using a riding model [aromatic C—H 0.93 Å, aliphatic C—H = 0.97 (2) Å and N—H = 0.86 Å Uiso(H) = 1.2Ueq(C)]. The H atoms bonded to O atoms were located in a differenceFourier maps and refined with O—H distance restraints of 0.85 (2) and Uiso(H) = 1.5Ueq(O).
Figures
Fig. 1.
A view of the molecule of (I) showing the atom-labelling scheme with displacement ellipsoids drawn at the 30% probability.
Fig. 2.
The crystal packing diagram, showing the π···π stacking and hydrogen bonds as dash lines.
Crystal data
C8H10O5·C7H6N2S | Z = 2 |
Mr = 336.36 | F000 = 352 |
Triclinic, P1 | Dx = 1.472 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
a = 8.3082 (1) Å | Cell parameters from 4303 reflections |
b = 9.0428 (1) Å | θ = 2.0–27.4º |
c = 11.0438 (2) Å | µ = 0.24 mm−1 |
α = 67.1546 (8)º | T = 296 (2) K |
β = 83.0101 (8)º | Block, colourless |
γ = 86.9193 (9)º | 0.43 × 0.27 × 0.16 mm |
V = 758.93 (2) Å3 |
Data collection
Bruker APEXII area-detector diffractometer | 3416 independent reflections |
Radiation source: fine-focus sealed tube | 2675 reflections with I > 2σ(I) |
Monochromator: graphite | Rint = 0.026 |
T = 296(2) K | θmax = 27.4º |
ω scans | θmin = 2.0º |
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −10→10 |
Tmin = 0.92, Tmax = 0.96 | k = −11→11 |
11829 measured reflections | l = −14→14 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.159 | w = 1/[σ2(Fo2) + (0.0773P)2 + 0.3994P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
3416 reflections | Δρmax = 0.67 e Å−3 |
214 parameters | Δρmin = −1.05 e Å−3 |
4 restraints | Extinction correction: none |
Primary atom site location: structure-invariant direct methods |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S1 | 0.41626 (8) | 0.33690 (10) | 0.46435 (8) | 0.0645 (3) | |
N1 | 0.5173 (3) | 0.4819 (3) | 0.2070 (3) | 0.0640 (6) | |
H1A | 0.5827 | 0.4957 | 0.1369 | 0.077* | |
H1B | 0.4338 | 0.5433 | 0.2033 | 0.077* | |
N2 | 0.6705 (2) | 0.2670 (2) | 0.33434 (19) | 0.0424 (4) | |
O1 | 0.2197 (2) | 0.5380 (2) | −0.00822 (19) | 0.0616 (5) | |
O2 | 0.28892 (19) | 1.05947 (19) | −0.01033 (17) | 0.0463 (4) | |
H2 | 0.385 (2) | 1.090 (4) | −0.025 (3) | 0.069* | |
O3 | 0.1725 (2) | 0.7920 (2) | −0.13815 (17) | 0.0546 (5) | |
H3 | 0.227 (4) | 0.770 (4) | −0.200 (3) | 0.082* | |
O4 | 0.40832 (17) | 0.81995 (19) | 0.06576 (18) | 0.0489 (4) | |
O5 | 0.17176 (18) | 0.58165 (18) | 0.27645 (15) | 0.0441 (4) | |
C1 | 0.2856 (2) | 0.9053 (2) | 0.0535 (2) | 0.0354 (4) | |
C2 | 0.1220 (2) | 0.8368 (2) | 0.1213 (2) | 0.0342 (4) | |
H2A | 0.0424 | 0.9240 | 0.1093 | 0.041* | |
C3 | 0.1319 (3) | 0.7405 (3) | 0.2703 (2) | 0.0405 (5) | |
H3A | 0.2094 | 0.7840 | 0.3079 | 0.049* | |
C4 | −0.0397 (3) | 0.7220 (3) | 0.3424 (2) | 0.0486 (6) | |
H4A | −0.1005 | 0.8219 | 0.3116 | 0.058* | |
H4B | −0.0381 | 0.6847 | 0.4373 | 0.058* | |
C5 | −0.1091 (3) | 0.5947 (3) | 0.3034 (3) | 0.0498 (6) | |
H5A | −0.1388 | 0.4980 | 0.3802 | 0.060* | |
H5B | −0.2028 | 0.6353 | 0.2554 | 0.060* | |
C6 | 0.0343 (3) | 0.5643 (3) | 0.2149 (2) | 0.0426 (5) | |
H6A | 0.0305 | 0.4601 | 0.2074 | 0.051* | |
C7 | 0.0545 (2) | 0.7055 (3) | 0.0818 (2) | 0.0368 (5) | |
H7A | −0.0530 | 0.7396 | 0.0525 | 0.044* | |
C8 | 0.1598 (3) | 0.6691 (3) | −0.0256 (2) | 0.0416 (5) | |
C9 | 0.5451 (3) | 0.3664 (3) | 0.3202 (3) | 0.0473 (6) | |
C10 | 0.6687 (3) | 0.1569 (3) | 0.4631 (2) | 0.0460 (5) | |
C11 | 0.7797 (4) | 0.0351 (3) | 0.5088 (3) | 0.0623 (7) | |
H11A | 0.8695 | 0.0243 | 0.4536 | 0.075* | |
C12 | 0.7536 (5) | −0.0717 (4) | 0.6404 (3) | 0.0803 (10) | |
H12A | 0.8273 | −0.1547 | 0.6738 | 0.096* | |
C13 | 0.6181 (5) | −0.0553 (4) | 0.7222 (3) | 0.0823 (10) | |
H13A | 0.6013 | −0.1294 | 0.8089 | 0.099* | |
C14 | 0.5100 (5) | 0.0671 (5) | 0.6778 (3) | 0.0788 (9) | |
H14A | 0.4208 | 0.0778 | 0.7335 | 0.095* | |
C15 | 0.5351 (3) | 0.1745 (3) | 0.5489 (3) | 0.0571 (5) |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0463 (4) | 0.0910 (6) | 0.0724 (5) | −0.0114 (3) | 0.0153 (3) | −0.0539 (4) |
N1 | 0.0493 (12) | 0.0656 (14) | 0.0688 (16) | 0.0157 (10) | −0.0021 (11) | −0.0202 (12) |
N2 | 0.0411 (9) | 0.0464 (10) | 0.0417 (10) | −0.0012 (8) | 0.0021 (8) | −0.0211 (9) |
O1 | 0.0721 (12) | 0.0542 (10) | 0.0538 (11) | 0.0143 (9) | 0.0059 (9) | −0.0212 (9) |
O2 | 0.0363 (8) | 0.0413 (8) | 0.0499 (10) | −0.0046 (6) | 0.0004 (7) | −0.0062 (7) |
O3 | 0.0684 (11) | 0.0541 (10) | 0.0368 (9) | 0.0106 (8) | 0.0043 (8) | −0.0171 (8) |
O4 | 0.0303 (7) | 0.0460 (9) | 0.0630 (11) | 0.0003 (6) | 0.0053 (7) | −0.0159 (8) |
O5 | 0.0379 (8) | 0.0474 (9) | 0.0401 (9) | 0.0018 (6) | −0.0035 (6) | −0.0098 (7) |
C1 | 0.0315 (9) | 0.0389 (10) | 0.0332 (10) | −0.0018 (8) | 0.0010 (8) | −0.0122 (8) |
C2 | 0.0265 (9) | 0.0372 (10) | 0.0373 (11) | 0.0009 (7) | 0.0013 (7) | −0.0141 (9) |
C3 | 0.0350 (10) | 0.0506 (12) | 0.0368 (11) | −0.0064 (9) | 0.0012 (8) | −0.0184 (10) |
C4 | 0.0433 (12) | 0.0602 (14) | 0.0400 (12) | −0.0075 (10) | 0.0110 (9) | −0.0205 (11) |
C5 | 0.0397 (12) | 0.0591 (14) | 0.0452 (13) | −0.0140 (10) | 0.0079 (10) | −0.0162 (11) |
C6 | 0.0405 (11) | 0.0420 (11) | 0.0440 (12) | −0.0060 (9) | 0.0013 (9) | −0.0162 (10) |
C7 | 0.0296 (9) | 0.0447 (11) | 0.0378 (11) | −0.0007 (8) | −0.0028 (8) | −0.0181 (9) |
C8 | 0.0381 (11) | 0.0503 (13) | 0.0394 (12) | 0.0028 (9) | −0.0046 (9) | −0.0210 (10) |
C9 | 0.0367 (11) | 0.0551 (13) | 0.0583 (15) | −0.0070 (10) | 0.0065 (10) | −0.0335 (12) |
C10 | 0.0556 (14) | 0.0478 (12) | 0.0408 (12) | −0.0131 (10) | −0.0007 (10) | −0.0234 (10) |
C11 | 0.088 (2) | 0.0553 (15) | 0.0482 (15) | −0.0018 (14) | −0.0140 (14) | −0.0224 (12) |
C12 | 0.129 (3) | 0.0528 (16) | 0.062 (2) | −0.0111 (18) | −0.034 (2) | −0.0174 (15) |
C13 | 0.125 (3) | 0.083 (2) | 0.0391 (15) | −0.0536 (16) | −0.0057 (17) | −0.0179 (15) |
C14 | 0.091 (2) | 0.104 (2) | 0.0495 (17) | −0.0510 (15) | 0.0100 (14) | −0.0374 (17) |
C15 | 0.0619 (14) | 0.0761 (14) | 0.0439 (14) | −0.0314 (9) | 0.0091 (9) | −0.0351 (11) |
Geometric parameters (Å, °)
S1—C15 | 1.734 (3) | C4—C5 | 1.537 (3) |
S1—C9 | 1.743 (2) | C4—H4A | 0.9700 |
N1—C9 | 1.318 (4) | C4—H4B | 0.9700 |
N1—H1A | 0.8600 | C5—C6 | 1.530 (3) |
N1—H1B | 0.8600 | C5—H5A | 0.9700 |
N2—C9 | 1.322 (3) | C5—H5B | 0.9700 |
N2—C10 | 1.382 (3) | C6—C7 | 1.525 (3) |
O1—C8 | 1.214 (3) | C6—H6A | 0.9800 |
O2—C1 | 1.295 (3) | C7—C8 | 1.517 (3) |
O2—H2 | 0.836 (18) | C7—H7A | 0.9800 |
O3—C8 | 1.303 (3) | C10—C11 | 1.375 (4) |
O3—H3 | 0.854 (18) | C10—C15 | 1.413 (3) |
O4—C1 | 1.234 (2) | C11—C12 | 1.396 (4) |
O5—C3 | 1.434 (3) | C11—H11A | 0.9300 |
O5—C6 | 1.443 (3) | C12—C13 | 1.395 (6) |
C1—C2 | 1.508 (3) | C12—H12A | 0.9300 |
C2—C3 | 1.544 (3) | C13—C14 | 1.361 (5) |
C2—C7 | 1.565 (3) | C13—H13A | 0.9300 |
C2—H2A | 0.9800 | C14—C15 | 1.374 (4) |
C3—C4 | 1.530 (3) | C14—H14A | 0.9300 |
C3—H3A | 0.9800 | ||
C15—S1—C9 | 89.18 (12) | O5—C6—C5 | 102.47 (18) |
C9—N1—H1A | 120.0 | C7—C6—C5 | 110.16 (19) |
C9—N1—H1B | 120.0 | O5—C6—H6A | 113.6 |
H1A—N1—H1B | 120.0 | C7—C6—H6A | 113.6 |
C9—N2—C10 | 111.49 (19) | C5—C6—H6A | 113.6 |
C1—O2—H2 | 109 (2) | C8—C7—C6 | 114.11 (18) |
C8—O3—H3 | 112 (2) | C8—C7—C2 | 115.16 (16) |
C3—O5—C6 | 96.24 (15) | C6—C7—C2 | 101.23 (17) |
O4—C1—O2 | 123.04 (18) | C8—C7—H7A | 108.7 |
O4—C1—C2 | 121.43 (18) | C6—C7—H7A | 108.7 |
O2—C1—C2 | 115.39 (17) | C2—C7—H7A | 108.7 |
C1—C2—C3 | 110.23 (17) | O1—C8—O3 | 124.6 (2) |
C1—C2—C7 | 116.64 (16) | O1—C8—C7 | 123.1 (2) |
C3—C2—C7 | 100.43 (16) | O3—C8—C7 | 112.29 (18) |
C1—C2—H2A | 109.7 | N1—C9—N2 | 123.7 (2) |
C3—C2—H2A | 109.7 | N1—C9—S1 | 121.07 (18) |
C7—C2—H2A | 109.7 | N2—C9—S1 | 115.2 (2) |
O5—C3—C4 | 103.13 (17) | C11—C10—N2 | 125.6 (2) |
O5—C3—C2 | 102.91 (16) | C11—C10—C15 | 120.4 (2) |
C4—C3—C2 | 108.53 (18) | N2—C10—C15 | 114.0 (2) |
O5—C3—H3A | 113.7 | C10—C11—C12 | 118.0 (3) |
C4—C3—H3A | 113.7 | C10—C11—H11A | 121.0 |
C2—C3—H3A | 113.7 | C12—C11—H11A | 121.0 |
C3—C4—C5 | 101.17 (18) | C11—C12—C13 | 120.6 (3) |
C3—C4—H4A | 111.5 | C11—C12—H12A | 119.7 |
C5—C4—H4A | 111.5 | C13—C12—H12A | 119.7 |
C3—C4—H4B | 111.5 | C14—C13—C12 | 121.3 (3) |
C5—C4—H4B | 111.5 | C14—C13—H13A | 119.3 |
H4A—C4—H4B | 109.4 | C12—C13—H13A | 119.3 |
C6—C5—C4 | 101.63 (17) | C13—C14—C15 | 118.7 (3) |
C6—C5—H5A | 111.4 | C13—C14—H14A | 120.6 |
C4—C5—H5A | 111.4 | C15—C14—H14A | 120.6 |
C6—C5—H5B | 111.4 | C14—C15—C10 | 120.9 (3) |
C4—C5—H5B | 111.4 | C14—C15—S1 | 128.9 (3) |
H5A—C5—H5B | 109.3 | C10—C15—S1 | 110.1 (2) |
O5—C6—C7 | 102.38 (16) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.86 | 2.13 | 2.953 (3) | 161 |
N1—H1B···O5 | 0.86 | 2.29 | 3.061 (3) | 150 |
N1—H1B···O4 | 0.86 | 2.38 | 2.991 (3) | 128 |
O2—H2···O4ii | 0.836 (18) | 1.868 (18) | 2.700 (2) | 174 (3) |
O3—H3···N2i | 0.854 (18) | 1.758 (19) | 2.611 (2) | 176 (4) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y+2, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KP2168).
References
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808015365/kp2168sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015365/kp2168Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report