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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jul 19;64(Pt 8):o1549. doi: 10.1107/S1600536808021089

(S)-2-[(2-Ammonio­phenyl)­sulfanyl­methyl]pyrrolidinium dibromide

Bailin Li a,b, Shuai Zhang a, Yifeng Wang a, Shuping Luo a,*
PMCID: PMC2962173  PMID: 21203253

Abstract

In the title compound, C11H18N2S2+·2Br, the pyrrolidine ring displays a half-chair conformation, with the flap C atom lying 0.522 (5) Å out of the plane of the other four atoms. The methyl­ene C atom, which connects the pyrrolidinium ring and the thio­ether group, is displaced from the plane of four pyrrolidinium atoms by 0.690 (6) Å in the same direction as the flap C atom. The plane of four pyrrolidinium atoms is almost perpendicular to the benzene ring [dihedral angle = 75.02 (4)°]. The crystal structure is stabilized by hydrogen bonds between the N and Br atoms.

Related literature

The synthesis of (S)-(+)-2-bromo­methyl­pyrrolidine hydro­bromide was described by Xu et al. (2006). The development of asymmetric organocatalysis was reviewed by Seayad & List (2005).graphic file with name e-64-o1549-scheme1.jpg

Experimental

Crystal data

  • C11H18N2S2+·2Br

  • M r = 370.15

  • Orthorhombic, Inline graphic

  • a = 7.9399 (9) Å

  • b = 10.8427 (13) Å

  • c = 17.658 (2) Å

  • V = 1520.2 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 5.45 mm−1

  • T = 293 (2) K

  • 0.49 × 0.42 × 0.36 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.103, T max = 0.137

  • 8969 measured reflections

  • 3311 independent reflections

  • 1808 reflections with I > 2σ(I)

  • R int = 0.136

Refinement

  • R[F 2 > 2σ(F 2)] = 0.058

  • wR(F 2) = 0.134

  • S = 0.83

  • 3311 reflections

  • 158 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.67 e Å−3

  • Δρmin = −0.50 e Å−3

  • Absolute structure: Flack (1983), 1394 Friedel pairs

  • Flack parameter: 0.00 (2)

Data collection: SMART (Bruker, 2001); cell refinement: SAINT-Plus (Bruker, 2000); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808021089/pk2105sup1.cif

e-64-o1549-sup1.cif (17.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021089/pk2105Isup2.hkl

e-64-o1549-Isup2.hkl (162.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2E⋯Br1i 0.83 (8) 2.39 (8) 3.201 (9) 169 (10)
N2—H2D⋯Br2ii 0.84 (6) 2.48 (4) 3.277 (9) 159 (8)
N2—H2C⋯Br1 0.84 (7) 2.47 (7) 3.298 (9) 173 (8)
N1—H1B⋯Br2 0.90 2.47 3.355 (7) 169
N1—H1A⋯Br2ii 0.90 2.33 3.224 (7) 170

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

In recent years, the field of asymmetric organocatalysis has developed rapidly, attracting an increasing number of research groups around the world (Seayad & List, 2005). The title compound, readily synthesized from commercially available L-proline and 2-aminobenzenethiol, could act as an organocatalyst in the Michael addition of ketones to nitrostyrenes. The reaction gave the desired Michael adducts in good yields and high enantioselectivities. The structure of (S)-2-((2-ammoniophenylthio)methyl)pyrrolidinium dibromide is shown in Fig. 1.

The crystal is built of doubly protonated cations and bromide anions. The pyrrolidine ring displays a half-chair conformation, with the flap C atom lying 0.522 (5) Å from the remaining four atoms of the pyrrolidine which are almost coplanar. The methylene C atom, which connects the pyrrolidinium ring and the thioether group, is displaced from the plane of four pyrrolidinium atoms by 0.690 (6) Å in the same direction, as the flap C atom. The plane of four pyrrolidinium ring atoms is almost perpendicular to the benzene ring [dihedral angle 75.02 (4) °]. The crystal structure is stabilized by hydrogen-bonds between the N and Br atoms. The molecular packing of the title compound showing H-bridge interactions between cationic-anionic groups is shown in Fig. 2.

Experimental

The title compound was synthesized by treating 2-aminobenzenethiol (1.25 g,10 mmol) with (S)-2-bromomethylpyrrolidine hydrobromide (2.47 g,10 mmol) in MeCN (30 ml) under stirring at 353 K for 24 h (yield 87%). The compound (S)-2-bromomethylpyrrolidine hydrobromide was obtained from commercially available L-proline by reduction with NaBH4 and subsequent bromination with PBr3 (Xu et al., 2006). Suitable crystals of the title compound were obtained by slow evaporation of an ethanol solution at room temperature.

Refinement

All carbon-bonded H atoms were placed in calculated positions with C—H = 0.93 Å (Car), C—H = 0.98 Å (R3CH), C—H = 0.97 Å (R2CH2) and refined using a riding model, with Uiso(H)=1.2eq(C). NH3 hydrogen atoms were located in a difference map and refined with an N—H distance restraint of 0.83 (1) Å, with U value being 0.06, 0.06, 0.09 respectively, while NH2 hydrogens were treated using a riding model with N—H distance of 0.90 Å.

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound with the atomic labeling scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The molecular packing of the title compound showing H-bridge interactions between cationic-anionic groups.

Crystal data

C11H18N2S2+·2Br F000 = 736
Mr = 370.15 Dx = 1.617 Mg m3
Orthorhombic, P212121 Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 1525 reflections
a = 7.9399 (9) Å θ = 4.4–38.3º
b = 10.8427 (13) Å µ = 5.45 mm1
c = 17.658 (2) Å T = 293 (2) K
V = 1520.2 (3) Å3 Prismatic, colorless
Z = 4 0.49 × 0.42 × 0.37 mm

Data collection

Bruker SMART CCD area-detector diffractometer 3311 independent reflections
Radiation source: fine-focus sealed tube 1808 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.136
T = 293(2) K θmax = 27.0º
φ and ω scans θmin = 2.2º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) h = −9→10
Tmin = 0.103, Tmax = 0.137 k = −13→12
8969 measured reflections l = −22→18

Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.058   w = 1/[σ2(Fo2) + (0.049P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.134 (Δ/σ)max < 0.001
S = 0.83 Δρmax = 0.67 e Å3
3311 reflections Δρmin = −0.50 e Å3
158 parameters Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraints Extinction coefficient: 0.0005 (1)
Primary atom site location: structure-invariant direct methods Absolute structure: Flack (1983), 1394 Friedel pairs
Secondary atom site location: difference Fourier map Flack parameter: 0.00 (2)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.30470 (12) −0.24305 (9) −0.08797 (5) 0.0559 (3)
Br2 −0.38177 (12) 0.34415 (8) 0.06967 (5) 0.0526 (3)
S1 −0.0443 (3) 0.1034 (2) 0.14946 (13) 0.0524 (6)
N1 0.0399 (9) 0.3571 (6) 0.0600 (4) 0.0502 (18)
H1A 0.0636 0.2939 0.0288 0.060*
H1B −0.0728 0.3650 0.0630 0.060*
N2 0.1147 (12) −0.0815 (8) 0.0452 (5) 0.0487 (18)
C1 0.1159 (18) 0.4726 (9) 0.0308 (7) 0.083 (3)
H1C 0.0296 0.5273 0.0111 0.100*
H1D 0.1959 0.4549 −0.0093 0.100*
C2 0.2025 (14) 0.5297 (9) 0.0973 (7) 0.072 (3)
H2A 0.3237 0.5225 0.0921 0.087*
H2B 0.1735 0.6164 0.1013 0.087*
C3 0.1443 (14) 0.4625 (9) 0.1640 (6) 0.068 (3)
H3A 0.0420 0.4990 0.1840 0.081*
H3B 0.2297 0.4627 0.2033 0.081*
C4 0.1120 (12) 0.3339 (8) 0.1362 (4) 0.049 (2)
H4 0.2194 0.2901 0.1309 0.059*
C5 −0.0079 (11) 0.2577 (8) 0.1852 (4) 0.052 (2)
H5A −0.1150 0.3004 0.1885 0.062*
H5B 0.0381 0.2519 0.2359 0.062*
C6 0.1553 (11) 0.0316 (8) 0.1640 (5) 0.047 (2)
C7 0.2504 (11) 0.0537 (9) 0.2270 (5) 0.056 (3)
H7 0.2117 0.1092 0.2632 0.068*
C8 0.4032 (13) −0.0049 (10) 0.2382 (6) 0.073 (3)
H8 0.4680 0.0138 0.2805 0.087*
C9 0.4579 (14) −0.0887 (10) 0.1879 (6) 0.071 (3)
H9 0.5602 −0.1285 0.1956 0.085*
C10 0.3611 (11) −0.1161 (8) 0.1239 (5) 0.053 (2)
H10 0.3980 −0.1750 0.0893 0.063*
C11 0.2112 (12) −0.0555 (8) 0.1123 (5) 0.045 (2)
H2C 0.157 (10) −0.127 (6) 0.012 (4) 0.06 (3)*
H2D 0.094 (12) −0.032 (6) 0.010 (3) 0.06 (3)*
H2E 0.043 (10) −0.135 (7) 0.054 (6) 0.09 (4)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.0514 (6) 0.0627 (5) 0.0536 (6) 0.0081 (5) −0.0055 (4) −0.0024 (5)
Br2 0.0526 (6) 0.0614 (5) 0.0438 (5) 0.0072 (5) −0.0041 (4) −0.0022 (5)
S1 0.0412 (14) 0.0682 (15) 0.0479 (14) 0.0052 (12) 0.0015 (11) 0.0049 (12)
N1 0.045 (4) 0.060 (4) 0.046 (4) 0.007 (4) 0.004 (3) −0.001 (4)
N2 0.054 (5) 0.048 (5) 0.044 (5) −0.003 (5) 0.002 (5) −0.002 (4)
C1 0.105 (10) 0.061 (7) 0.084 (8) 0.010 (7) 0.005 (8) 0.006 (6)
C2 0.055 (7) 0.055 (6) 0.107 (10) 0.005 (5) 0.010 (7) −0.017 (6)
C3 0.062 (8) 0.074 (7) 0.067 (7) −0.006 (6) −0.007 (6) −0.021 (6)
C4 0.038 (5) 0.066 (6) 0.044 (5) 0.015 (5) 0.000 (4) 0.003 (5)
C5 0.053 (6) 0.070 (6) 0.033 (4) 0.019 (6) 0.002 (4) −0.009 (5)
C6 0.033 (6) 0.062 (6) 0.046 (5) 0.008 (4) −0.006 (4) 0.010 (4)
C7 0.043 (6) 0.077 (7) 0.048 (6) 0.012 (5) 0.003 (5) 0.000 (5)
C8 0.062 (8) 0.102 (8) 0.055 (7) 0.010 (7) −0.022 (6) −0.008 (6)
C9 0.054 (7) 0.103 (8) 0.056 (7) 0.028 (7) −0.005 (6) −0.001 (6)
C10 0.046 (6) 0.061 (6) 0.051 (5) 0.022 (5) 0.011 (5) 0.010 (4)
C11 0.044 (6) 0.059 (6) 0.031 (5) 0.000 (5) 0.000 (4) 0.007 (4)

Geometric parameters (Å, °)

Br1—H2C 2.47 (7) C3—C4 1.500 (12)
Br2—H1B 2.4665 C3—H3A 0.9700
S1—C6 1.784 (8) C3—H3B 0.9700
S1—C5 1.811 (9) C4—C5 1.529 (12)
N1—C1 1.483 (12) C4—H4 0.9800
N1—C4 1.484 (10) C5—H5A 0.9700
N1—H1A 0.9000 C5—H5B 0.9700
N1—H1B 0.9000 C6—C7 1.366 (11)
N2—C11 1.438 (11) C6—C11 1.388 (11)
N2—H2C 0.84 (7) C7—C8 1.383 (13)
N2—H2D 0.84 (6) C7—H7 0.9300
N2—H2E 0.83 (8) C8—C9 1.343 (13)
C1—C2 1.495 (14) C8—H8 0.9300
C1—H1C 0.9700 C9—C10 1.399 (13)
C1—H1D 0.9700 C9—H9 0.9300
C2—C3 1.460 (13) C10—C11 1.374 (12)
C2—H2A 0.9700 C10—H10 0.9300
C2—H2B 0.9700
C6—S1—C5 102.2 (4) N1—C4—C3 101.8 (7)
C1—N1—C4 107.5 (8) N1—C4—C5 111.3 (7)
C1—N1—H1A 110.2 C3—C4—C5 115.1 (8)
C4—N1—H1A 110.2 N1—C4—H4 109.4
C1—N1—H1B 110.2 C3—C4—H4 109.4
C4—N1—H1B 110.2 C5—C4—H4 109.4
H1A—N1—H1B 108.5 C4—C5—S1 113.7 (6)
C11—N2—H2C 118 (6) C4—C5—H5A 108.8
C11—N2—H2D 126 (6) S1—C5—H5A 108.8
H2C—N2—H2D 87 (7) C4—C5—H5B 108.8
C11—N2—H2E 111 (7) S1—C5—H5B 108.8
H2C—N2—H2E 90 (9) H5A—C5—H5B 107.7
H2D—N2—H2E 117 (10) C7—C6—C11 118.6 (8)
N1—C1—C2 105.3 (9) C7—C6—S1 122.1 (7)
N1—C1—H1C 110.7 C11—C6—S1 119.1 (7)
C2—C1—H1C 110.7 C6—C7—C8 121.3 (9)
N1—C1—H1D 110.7 C6—C7—H7 119.3
C2—C1—H1D 110.7 C8—C7—H7 119.3
H1C—C1—H1D 108.8 C9—C8—C7 120.0 (10)
C3—C2—C1 106.3 (8) C9—C8—H8 120.0
C3—C2—H2A 110.5 C7—C8—H8 120.0
C1—C2—H2A 110.5 C8—C9—C10 120.1 (9)
C3—C2—H2B 110.5 C8—C9—H9 120.0
C1—C2—H2B 110.5 C10—C9—H9 120.0
H2A—C2—H2B 108.7 C11—C10—C9 119.6 (9)
C2—C3—C4 104.7 (7) C11—C10—H10 120.2
C2—C3—H3A 110.8 C9—C10—H10 120.2
C4—C3—H3A 110.8 C10—C11—C6 120.3 (8)
C2—C3—H3B 110.8 C10—C11—N2 119.4 (8)
C4—C3—H3B 110.8 C6—C11—N2 120.3 (8)
H3A—C3—H3B 108.9
C4—N1—C1—C2 −12.2 (11) C11—C6—C7—C8 2.8 (14)
N1—C1—C2—C3 −12.1 (11) S1—C6—C7—C8 178.6 (8)
C1—C2—C3—C4 31.4 (11) C6—C7—C8—C9 −2.4 (15)
C1—N1—C4—C3 30.7 (10) C7—C8—C9—C10 0.5 (16)
C1—N1—C4—C5 153.8 (8) C8—C9—C10—C11 1.0 (15)
C2—C3—C4—N1 −38.0 (10) C9—C10—C11—C6 −0.6 (13)
C2—C3—C4—C5 −158.6 (8) C9—C10—C11—N2 178.2 (9)
N1—C4—C5—S1 64.5 (8) C7—C6—C11—C10 −1.3 (12)
C3—C4—C5—S1 179.7 (7) S1—C6—C11—C10 −177.2 (6)
C6—S1—C5—C4 69.0 (6) C7—C6—C11—N2 180.0 (8)
C5—S1—C6—C7 38.7 (8) S1—C6—C11—N2 4.1 (11)
C5—S1—C6—C11 −145.6 (7)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2E···Br1i 0.83 (8) 2.39 (8) 3.201 (9) 169 (10)
N2—H2D···Br2ii 0.84 (6) 2.48 (4) 3.277 (9) 159 (8)
N2—H2C···Br1 0.84 (7) 2.47 (7) 3.298 (9) 173 (8)
N1—H1B···Br2 0.90 2.47 3.355 (7) 169
N1—H1A···Br2ii 0.90 2.33 3.224 (7) 170

Symmetry codes: (i) x−1/2, −y−1/2, −z; (ii) x+1/2, −y+1/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2105).

References

  1. Bruker (2000). SAINT-Plus Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2001). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  4. Seayad, J. & List, B. (2005). Org. Biol. Chem.3, 719–724. [DOI] [PubMed]
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Xu, D. Q., Luo, S. P., Yue, H. D., Wang, L. P., Liu, Y. K. & Xu, Z. Y. (2006). Synlett, 16, 2569–2572.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808021089/pk2105sup1.cif

e-64-o1549-sup1.cif (17.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021089/pk2105Isup2.hkl

e-64-o1549-Isup2.hkl (162.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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