Abstract
The molecule of the title compound, C8H8N4O3S, is planar. Adjacent molecules are linked through O—H⋯S, N—H⋯S and N—H⋯O hydrogen bonds into a three-dimensional network.
Related literature
For the structure of 2-hydroxybenzaldehyde thiosemicarbazone, see: Chattopadhyay et al. (1988 ▶).
Experimental
Crystal data
C8H8N4O3S
M r = 240.24
Monoclinic,
a = 12.6157 (3) Å
b = 5.4815 (2) Å
c = 14.2397 (2) Å
β = 94.039 (2)°
V = 982.27 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.33 mm−1
T = 100 (2) K
0.49 × 0.01 × 0.01 mm
Data collection
Bruker SMART APEX diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.856, T max = 0.997
9462 measured reflections
2247 independent reflections
1725 reflections with I > 2σ(I)
R int = 0.037
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.111
S = 1.04
2247 reflections
161 parameters
8 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.47 e Å−3
Δρmin = −0.23 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022976/rk2102sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022976/rk2102Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯S1i | 0.84 (1) | 2.34 (1) | 3.175 (2) | 170 (3) |
| N3—H31⋯S1ii | 0.85 (1) | 2.50 (1) | 3.337 (2) | 167 (2) |
| N4—H41⋯O2iii | 0.85 (1) | 2.14 (1) | 2.987 (2) | 172 (3) |
| N4—H42⋯O3iv | 0.85 (1) | 2.31 (2) | 3.044 (2) | 144 (2) |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
Acknowledgments
The authors thank the Science Fund (grant Nos. 12-02-03-2031 and 12-02-03-2051) and the University of Malaya (PJP) for supporting this study. We are grateful to the University of Malaya for the purchase of the diffractometer.
supplementary crystallographic information
Comment
Salicylaldehyde thiosemicarbazone uses its 2-hydroxy group to form an intramolecular hydrogen bond (Chattopadhyay et al., 1988). In the present compound, the electron-withdrawing nitro group that is para to the hydroxy group renders the hydroxy group much more acidic, so that the compound (Scheme) is able to use the hydroxy group to form a hydrogen bond to an adjacent molecule instead (Fig. 1).
Experimental
The Schiff base was prepared by refluxing thiosemicarbazide (0.30 g, 3.3 mmol) and 5-nitro-2-hydroxybenzaldehyde (0.55 g, 3.3 mmol) in ethanol for 2 h. The product was recrystallized from ethanol.
Refinement
Nitrogen- and oxygen-bound hydrogen atoms were refined with a distance restraint of N—H and O—H 0.85 (1) Å. Their temperature factors were freely refined. The carbon-bound ones were placed in geometric positions with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
Molecular structure of title compound with the atom numbering scheme (Barbour, 2001). Displacement ellipsoids are drawn at 50% probability level. H atoms are presented as a small spheres of arbitrary radius.
Crystal data
| C8H8N4O3S | F000 = 496 |
| Mr = 240.24 | Dx = 1.625 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2540 reflections |
| a = 12.6157 (3) Å | θ = 2.2–29.5º |
| b = 5.4815 (2) Å | µ = 0.33 mm−1 |
| c = 14.2397 (2) Å | T = 100 (2) K |
| β = 94.039 (2)º | Block, yellow |
| V = 982.27 (5) Å3 | 0.49 × 0.01 × 0.01 mm |
| Z = 4 |
Data collection
| Bruker SMART APEX diffractometer | 2247 independent reflections |
| Radiation source: fine-focus sealed tube | 1725 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.037 |
| T = 100(2) K | θmax = 27.5º |
| ω scans | θmin = 2.1º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −16→15 |
| Tmin = 0.856, Tmax = 0.997 | k = −5→7 |
| 9462 measured reflections | l = −18→18 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.111 | w = 1/[σ2(Fo2) + (0.0616P)2 + 0.4126P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max = 0.001 |
| 2247 reflections | Δρmax = 0.47 e Å−3 |
| 161 parameters | Δρmin = −0.23 e Å−3 |
| 8 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 >σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.45571 (4) | 1.58779 (11) | 0.35227 (3) | 0.02368 (17) | |
| O1 | 0.78686 (12) | 0.8925 (3) | 0.67628 (10) | 0.0271 (4) | |
| O2 | 0.92212 (11) | 0.0797 (3) | 0.40282 (10) | 0.0258 (3) | |
| O3 | 0.82499 (11) | 0.3034 (3) | 0.30592 (9) | 0.0243 (3) | |
| N1 | 0.86480 (13) | 0.2593 (3) | 0.38518 (11) | 0.0200 (4) | |
| N2 | 0.64392 (12) | 1.0445 (3) | 0.42660 (11) | 0.0179 (4) | |
| N3 | 0.56870 (13) | 1.2266 (3) | 0.42711 (11) | 0.0199 (4) | |
| N4 | 0.57458 (14) | 1.2637 (4) | 0.26788 (12) | 0.0222 (4) | |
| C1 | 0.80683 (15) | 0.7307 (4) | 0.60870 (13) | 0.0201 (4) | |
| C2 | 0.87612 (16) | 0.5353 (4) | 0.62369 (13) | 0.0215 (4) | |
| H2 | 0.9106 | 0.5093 | 0.6843 | 0.026* | |
| C3 | 0.89488 (15) | 0.3793 (4) | 0.55093 (13) | 0.0211 (4) | |
| H3 | 0.9414 | 0.2440 | 0.5609 | 0.025* | |
| C4 | 0.84439 (15) | 0.4236 (4) | 0.46231 (13) | 0.0185 (4) | |
| C5 | 0.77372 (15) | 0.6132 (4) | 0.44565 (13) | 0.0180 (4) | |
| H5 | 0.7398 | 0.6378 | 0.3847 | 0.022* | |
| C6 | 0.75301 (14) | 0.7676 (4) | 0.51947 (13) | 0.0179 (4) | |
| C7 | 0.67610 (15) | 0.9650 (4) | 0.50831 (13) | 0.0197 (4) | |
| H7 | 0.6492 | 1.0363 | 0.5626 | 0.024* | |
| C8 | 0.53819 (15) | 1.3452 (4) | 0.34732 (13) | 0.0195 (4) | |
| H1 | 0.8337 (17) | 0.880 (5) | 0.7212 (14) | 0.044 (8)* | |
| H31 | 0.5515 (19) | 1.281 (5) | 0.4800 (11) | 0.036 (7)* | |
| H41 | 0.570 (2) | 1.360 (4) | 0.2208 (13) | 0.038 (7)* | |
| H42 | 0.6185 (16) | 1.145 (3) | 0.2711 (17) | 0.030 (7)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0247 (3) | 0.0265 (3) | 0.0193 (2) | 0.0085 (2) | −0.00213 (18) | −0.0004 (2) |
| O1 | 0.0303 (8) | 0.0290 (9) | 0.0209 (7) | 0.0072 (7) | −0.0059 (6) | −0.0041 (6) |
| O2 | 0.0268 (8) | 0.0220 (8) | 0.0287 (7) | 0.0074 (7) | 0.0022 (6) | −0.0008 (6) |
| O3 | 0.0268 (8) | 0.0259 (9) | 0.0200 (7) | 0.0004 (7) | 0.0016 (6) | 0.0007 (6) |
| N1 | 0.0181 (8) | 0.0185 (9) | 0.0239 (8) | −0.0036 (7) | 0.0047 (6) | 0.0002 (7) |
| N2 | 0.0152 (8) | 0.0175 (9) | 0.0210 (7) | 0.0005 (7) | 0.0014 (6) | 0.0008 (6) |
| N3 | 0.0201 (8) | 0.0220 (10) | 0.0174 (8) | 0.0051 (7) | 0.0008 (6) | 0.0007 (7) |
| N4 | 0.0249 (9) | 0.0228 (10) | 0.0191 (8) | 0.0049 (8) | 0.0019 (7) | 0.0015 (7) |
| C1 | 0.0201 (10) | 0.0204 (11) | 0.0200 (9) | −0.0020 (9) | 0.0024 (7) | −0.0005 (8) |
| C2 | 0.0197 (10) | 0.0242 (12) | 0.0200 (9) | 0.0011 (9) | −0.0029 (7) | 0.0025 (8) |
| C3 | 0.0178 (10) | 0.0198 (11) | 0.0254 (10) | 0.0022 (8) | −0.0001 (7) | 0.0037 (8) |
| C4 | 0.0158 (9) | 0.0175 (10) | 0.0224 (9) | −0.0035 (8) | 0.0029 (7) | −0.0005 (8) |
| C5 | 0.0155 (9) | 0.0187 (11) | 0.0198 (9) | −0.0028 (8) | 0.0012 (7) | 0.0043 (7) |
| C6 | 0.0149 (9) | 0.0189 (11) | 0.0199 (9) | −0.0013 (8) | 0.0012 (7) | 0.0023 (8) |
| C7 | 0.0188 (10) | 0.0205 (11) | 0.0198 (9) | 0.0007 (8) | 0.0015 (7) | −0.0010 (8) |
| C8 | 0.0166 (9) | 0.0208 (11) | 0.0207 (9) | −0.0024 (8) | −0.0016 (7) | 0.0009 (8) |
Geometric parameters (Å, °)
| S1—C8 | 1.693 (2) | N4—H42 | 0.852 (10) |
| O1—C1 | 1.345 (2) | C1—C2 | 1.390 (3) |
| O1—H1 | 0.842 (10) | C1—C6 | 1.412 (2) |
| O2—N1 | 1.237 (2) | C2—C3 | 1.377 (3) |
| O3—N1 | 1.227 (2) | C2—H2 | 0.9500 |
| N1—C4 | 1.457 (3) | C3—C4 | 1.394 (3) |
| N2—C7 | 1.281 (2) | C3—H3 | 0.9500 |
| N2—N3 | 1.378 (2) | C4—C5 | 1.379 (3) |
| N3—C8 | 1.342 (2) | C5—C6 | 1.389 (3) |
| N3—H31 | 0.852 (10) | C5—H5 | 0.9500 |
| N4—C8 | 1.328 (3) | C6—C7 | 1.455 (3) |
| N4—H41 | 0.853 (10) | C7—H7 | 0.9500 |
| C1—O1—H1 | 109 (2) | C2—C3—H3 | 120.6 |
| O3—N1—O2 | 122.64 (17) | C4—C3—H3 | 120.6 |
| O3—N1—C4 | 119.27 (17) | C5—C4—C3 | 122.38 (19) |
| O2—N1—C4 | 118.09 (16) | C5—C4—N1 | 118.87 (17) |
| C7—N2—N3 | 114.57 (16) | C3—C4—N1 | 118.73 (18) |
| C8—N3—N2 | 120.22 (16) | C4—C5—C6 | 118.88 (17) |
| C8—N3—H31 | 120.1 (18) | C4—C5—H5 | 120.6 |
| N2—N3—H31 | 118.6 (18) | C6—C5—H5 | 120.6 |
| C8—N4—H41 | 116.8 (18) | C5—C6—C1 | 119.31 (18) |
| C8—N4—H42 | 118.3 (17) | C5—C6—C7 | 122.03 (17) |
| H41—N4—H42 | 122 (2) | C1—C6—C7 | 118.65 (18) |
| O1—C1—C2 | 123.07 (17) | N2—C7—C6 | 121.22 (18) |
| O1—C1—C6 | 116.53 (18) | N2—C7—H7 | 119.4 |
| C2—C1—C6 | 120.40 (18) | C6—C7—H7 | 119.4 |
| C3—C2—C1 | 120.18 (18) | N4—C8—N3 | 117.54 (19) |
| C3—C2—H2 | 119.9 | N4—C8—S1 | 123.38 (15) |
| C1—C2—H2 | 119.9 | N3—C8—S1 | 119.07 (15) |
| C2—C3—C4 | 118.77 (19) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···S1i | 0.84 (1) | 2.34 (1) | 3.175 (2) | 170 (3) |
| N3—H31···S1ii | 0.85 (1) | 2.50 (1) | 3.337 (2) | 167 (2) |
| N4—H41···O2iii | 0.85 (1) | 2.14 (1) | 2.987 (2) | 172 (3) |
| N4—H42···O3iv | 0.85 (1) | 2.31 (2) | 3.044 (2) | 144 (2) |
Symmetry codes: (i) x+1/2, −y+5/2, z+1/2; (ii) −x+1, −y+3, −z+1; (iii) −x+3/2, y+3/2, −z+1/2; (iv) −x+3/2, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RK2102).
References
- Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Chattopadhyay, D., Mazumdar, S. K., Banerjee, T., Ghosh, S. & Mak, T. C. W. (1988). Acta Cryst. C44, 1025–1028. [DOI] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2008). publCIF In preparation.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022976/rk2102sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022976/rk2102Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

