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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Jul 5;64(Pt 8):m992. doi: 10.1107/S1600536808019740

Dichlorido[1-(1,10-phenanthrolin-2-yl)-2-pyridone]cadmium(II)

Jin-Min Li a,*
PMCID: PMC2962234  PMID: 21203087

Abstract

In the title mononuclear complex, [CdCl2(C17H11N3O)], the CdII ion assumes a distorted trigonal–bipyramidal coordination geometry. The pyridone plane is twisted out of the 1,10-phenanthroline mean plane by 43.8 (3)°. In the crystal structure, short inter­molecular distances [3.627 (4)–3.671 (4) Å] between the centroids of the six- and five-membered Cd-containing rings suggest the existence of π–π inter­actions, which link the mol­ecules into stacks along the a axis.

Related literature

For a related structure, see Liu et al. (2008).graphic file with name e-64-0m992-scheme1.jpg

Experimental

Crystal data

  • [CdCl2(C17H11N3O)]

  • M r = 456.59

  • Monoclinic, Inline graphic

  • a = 7.5623 (13) Å

  • b = 14.105 (3) Å

  • c = 15.155 (3) Å

  • β = 97.728 (3)°

  • V = 1601.9 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.71 mm−1

  • T = 298 (2) K

  • 0.11 × 0.06 × 0.05 mm

Data collection

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2008) T min = 0.835, T max = 0.920

  • 9188 measured reflections

  • 3476 independent reflections

  • 2229 reflections with I > 2σ(I)

  • R int = 0.071

Refinement

  • R[F 2 > 2σ(F 2)] = 0.071

  • wR(F 2) = 0.136

  • S = 1.05

  • 3476 reflections

  • 217 parameters

  • H-atom parameters constrained

  • Δρmax = 1.15 e Å−3

  • Δρmin = −0.83 e Å−3

Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019740/cv2426sup1.cif

e-64-0m992-sup1.cif (19.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019740/cv2426Isup2.hkl

e-64-0m992-Isup2.hkl (170.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Centroid–centroid distances (Å).

Cg1, Cg2 and Cg3 are the centroids of the rings Cd1/N2/N3/C8/C13, C8/C9/C11–C14 and N3/C13–C17, respectively.

Cg1⋯Cg2i 3.627 (4)
Cg2⋯Cg2i 3.631 (4)
Cg2⋯Cg3ii 3.671 (4)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Derivatives of 1,10-phenanthroline play an important role in modern coordination chemistry, and the complex with 1-(1,10-phenanthrolin-2-yl)-2-pyridone as bridging ligand and termial ligand has been reported (Liu et al., 2008). Here I report the crystal structure of the title complex with 1-(1,10-phenanthrolin-2-yl)-2-pyridone as terminal ligand.

Fig. 1 shows the title coordination structure, revealing that the atom Cd is in a distorted trigonal bipyramidal environment. The dihedral angle between the pyridine ring plane and 1,10-phenanthroline ring system plane is 43.8 (3)°, which is smaller than that of the binuclear CdII complex (Liu et al., 2008). The crystal packing exhibits weak π–π stacking interactions involving symmetry-related neigbouring complexes, the relevant distances being Cg1···Cg2i = 3.627 (4) Å and Cg1···Cg2iperp = 3.407 Å and α = 4.70°; Cg2···Cg2i = 3.631 (4) Å and Cg2···Cg2iperp = 3.464 Å and α = 0.00°; Cg2···Cg3ii =3.671 (4) Å and Cg2···Cg3iiperp = 3.467 Å and α = 1.26° [symmetry codes: (i) -x, 2-y, -z; (ii) 1-x, 2-y, -z; Cg1, Cg2 and Cg3 are centroids of the Cd1/N2/N3/C8/C13, C8/C9/C11–C14 and N3/C13–C17 rings, respectively; Cgi···Cgjperp is the perpendicular distance from ring Cgi to ring Cgj; α is the dihedral angle between ring plane Cgi and ring plane Cgj].

Experimental

10 ml Methanol solution of 1-(1,10-phenanthrolin-2-yl)-2-pyridone (0.1620 g, 0.593 mmol) was added into 10 ml methanol solution containing CdCl2.2.5H2O (0.1352 g, 0.592 mmol) and the mixture was stirred for a few minutes. The colourless single crystals were obtained after the filtrate had been allowed to stand at room temperature for two weeks.

Refinement

All H atoms were placed in calculated positions with C—H = 0.93 Å and refined as riding with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title complex showing the atom-numbering scheme and 30% probability displacement ellipsoids.

Crystal data

[CdCl2(C17H11N3O)] F000 = 896
Mr = 456.59 Dx = 1.893 Mg m3
Monoclinic, P21/c Mo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 970 reflections
a = 7.5623 (13) Å θ = 2.7–18.8º
b = 14.105 (3) Å µ = 1.71 mm1
c = 15.155 (3) Å T = 298 (2) K
β = 97.728 (3)º Block, colourless
V = 1601.9 (5) Å3 0.11 × 0.06 × 0.05 mm
Z = 4

Data collection

Bruker SMART APEX CCD diffractometer 3476 independent reflections
Radiation source: fine-focus sealed tube 2229 reflections with I > 2σ(I)
Monochromator: graphite Rint = 0.071
T = 298(2) K θmax = 27.0º
φ and ω scans θmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 2008) h = −9→9
Tmin = 0.835, Tmax = 0.920 k = −17→17
9188 measured reflections l = −12→19

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.071 H-atom parameters constrained
wR(F2) = 0.136   w = 1/[σ2(Fo2) + (0.0492P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05 (Δ/σ)max = 0.001
3476 reflections Δρmax = 1.15 e Å3
217 parameters Δρmin = −0.83 e Å3
Primary atom site location: structure-invariant direct methods Extinction correction: none

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.1695 (9) 0.9518 (5) 0.3440 (5) 0.0366 (17)
C2 0.1891 (10) 0.9363 (6) 0.4389 (5) 0.050 (2)
H2 0.1560 0.8781 0.4603 0.060*
C3 0.2543 (10) 1.0039 (6) 0.4973 (6) 0.052 (2)
H3 0.2638 0.9922 0.5581 0.063*
C4 0.3073 (11) 1.0914 (6) 0.4668 (6) 0.055 (2)
H4 0.3551 1.1373 0.5072 0.066*
C5 0.2892 (10) 1.1088 (5) 0.3801 (6) 0.049 (2)
H5 0.3256 1.1672 0.3604 0.059*
C6 0.1179 (10) 1.1614 (5) 0.2066 (6) 0.046 (2)
H6 0.0853 1.2001 0.2514 0.056*
C7 0.1882 (9) 1.0723 (5) 0.2263 (5) 0.0389 (18)
C8 0.2128 (8) 1.0430 (5) 0.0795 (5) 0.0326 (16)
C9 0.1472 (9) 1.1317 (5) 0.0533 (5) 0.0395 (18)
C10 0.0974 (9) 1.1916 (5) 0.1209 (6) 0.047 (2)
H10 0.0508 1.2515 0.1065 0.057*
C11 0.1306 (10) 1.1576 (5) −0.0390 (6) 0.047 (2)
H11 0.0847 1.2168 −0.0566 0.057*
C12 0.1796 (9) 1.0986 (6) −0.1005 (6) 0.048 (2)
H12 0.1671 1.1171 −0.1599 0.058*
C13 0.2654 (8) 0.9785 (5) 0.0133 (4) 0.0305 (16)
C14 0.2512 (9) 1.0072 (5) −0.0751 (5) 0.0380 (18)
C15 0.3059 (10) 0.9431 (6) −0.1369 (5) 0.048 (2)
H15 0.2987 0.9598 −0.1967 0.058*
C16 0.3689 (10) 0.8574 (6) −0.1090 (5) 0.049 (2)
H16 0.4076 0.8150 −0.1494 0.059*
C17 0.3761 (10) 0.8321 (5) −0.0188 (5) 0.045 (2)
H17 0.4158 0.7719 −0.0006 0.054*
Cd1 0.31562 (7) 0.85238 (4) 0.18959 (4) 0.0400 (2)
Cl1 0.5861 (3) 0.86363 (15) 0.29470 (14) 0.0613 (6)
Cl2 0.2258 (3) 0.68924 (14) 0.15321 (14) 0.0580 (6)
N1 0.2182 (7) 1.0428 (4) 0.3185 (4) 0.0379 (15)
N2 0.2331 (7) 1.0138 (4) 0.1660 (4) 0.0369 (14)
N3 0.3273 (7) 0.8923 (4) 0.0409 (4) 0.0330 (13)
O1 0.1125 (7) 0.8907 (3) 0.2885 (3) 0.0460 (13)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.034 (4) 0.034 (4) 0.042 (4) 0.001 (3) 0.007 (4) 0.005 (4)
C2 0.053 (5) 0.048 (5) 0.048 (5) −0.009 (4) 0.004 (4) −0.001 (4)
C3 0.065 (5) 0.056 (5) 0.036 (4) 0.001 (4) 0.007 (4) −0.008 (4)
C4 0.069 (6) 0.050 (5) 0.045 (5) −0.010 (4) 0.005 (5) −0.014 (4)
C5 0.058 (5) 0.036 (4) 0.053 (5) 0.001 (4) 0.009 (5) −0.006 (4)
C6 0.043 (4) 0.033 (4) 0.064 (6) 0.002 (3) 0.010 (4) −0.013 (4)
C7 0.036 (4) 0.042 (4) 0.039 (4) 0.002 (3) 0.009 (4) −0.001 (4)
C8 0.028 (4) 0.029 (4) 0.040 (4) −0.002 (3) 0.004 (3) 0.001 (3)
C9 0.024 (4) 0.038 (4) 0.055 (5) −0.003 (3) 0.000 (4) 0.003 (4)
C10 0.039 (4) 0.028 (4) 0.074 (6) 0.010 (3) 0.002 (4) 0.009 (4)
C11 0.050 (5) 0.035 (4) 0.054 (5) −0.007 (4) −0.008 (4) 0.022 (4)
C12 0.044 (5) 0.051 (5) 0.045 (5) −0.011 (4) −0.011 (4) 0.018 (4)
C13 0.027 (4) 0.033 (4) 0.030 (4) −0.007 (3) −0.001 (3) 0.000 (3)
C14 0.037 (4) 0.049 (5) 0.026 (4) −0.010 (4) −0.004 (3) −0.002 (4)
C15 0.055 (5) 0.058 (5) 0.031 (4) −0.024 (4) 0.007 (4) 0.001 (4)
C16 0.046 (5) 0.057 (5) 0.047 (5) −0.012 (4) 0.013 (4) −0.013 (5)
C17 0.052 (5) 0.029 (4) 0.054 (5) −0.001 (3) 0.010 (4) −0.010 (4)
Cd1 0.0511 (4) 0.0353 (3) 0.0328 (3) 0.0065 (3) 0.0029 (2) 0.0033 (3)
Cl1 0.0558 (12) 0.0765 (15) 0.0481 (12) −0.0004 (11) −0.0063 (10) 0.0119 (12)
Cl2 0.0922 (16) 0.0353 (10) 0.0463 (12) −0.0013 (11) 0.0083 (12) 0.0006 (10)
N1 0.039 (4) 0.038 (3) 0.037 (4) −0.003 (3) 0.005 (3) −0.003 (3)
N2 0.028 (3) 0.041 (3) 0.041 (4) 0.001 (3) 0.001 (3) 0.000 (3)
N3 0.037 (3) 0.032 (3) 0.030 (3) −0.001 (3) 0.003 (3) 0.002 (3)
O1 0.058 (3) 0.037 (3) 0.045 (3) −0.010 (3) 0.012 (3) −0.006 (3)

Geometric parameters (Å, °)

C1—O1 1.239 (8) C9—C11 1.436 (11)
C1—N1 1.404 (8) C10—H10 0.9300
C1—C2 1.442 (10) C11—C12 1.337 (11)
C2—C3 1.348 (10) C11—H11 0.9300
C2—H2 0.9300 C12—C14 1.431 (10)
C3—C4 1.394 (11) C12—H12 0.9300
C3—H3 0.9300 C13—N3 1.348 (8)
C4—C5 1.326 (11) C13—C14 1.390 (9)
C4—H4 0.9300 C14—C15 1.403 (10)
C5—N1 1.375 (9) C15—C16 1.347 (10)
C5—H5 0.9300 C15—H15 0.9300
C6—C10 1.356 (11) C16—C17 1.407 (10)
C6—C7 1.382 (9) C16—H16 0.9300
C6—H6 0.9300 C17—N3 1.329 (8)
C7—N2 1.310 (8) C17—H17 0.9300
C7—N1 1.446 (9) Cd1—N3 2.336 (6)
C8—N2 1.362 (8) Cd1—O1 2.349 (5)
C8—C9 1.384 (9) Cd1—N2 2.376 (6)
C8—C13 1.450 (9) Cd1—Cl1 2.423 (2)
C9—C10 1.417 (11) Cd1—Cl2 2.441 (2)
Cg1···Cg2i 3.627 (4) Cg2···Cg3ii 3.671 (4)
Cg2···Cg2i 3.631 (4)
O1—C1—N1 121.9 (7) N3—C13—C14 122.7 (6)
O1—C1—C2 123.4 (7) N3—C13—C8 117.9 (6)
N1—C1—C2 114.6 (7) C14—C13—C8 119.4 (6)
C3—C2—C1 121.8 (7) C13—C14—C15 117.7 (7)
C3—C2—H2 119.1 C13—C14—C12 119.9 (7)
C1—C2—H2 119.1 C15—C14—C12 122.4 (7)
C2—C3—C4 120.3 (8) C16—C15—C14 119.5 (7)
C2—C3—H3 119.9 C16—C15—H15 120.2
C4—C3—H3 119.9 C14—C15—H15 120.3
C5—C4—C3 119.7 (8) C15—C16—C17 119.9 (7)
C5—C4—H4 120.1 C15—C16—H16 120.1
C3—C4—H4 120.1 C17—C16—H16 120.1
C4—C5—N1 121.8 (8) N3—C17—C16 121.4 (7)
C4—C5—H5 119.1 N3—C17—H17 119.3
N1—C5—H5 119.1 C16—C17—H17 119.3
C10—C6—C7 119.0 (7) N3—Cd1—O1 132.29 (19)
C10—C6—H6 120.5 N3—Cd1—N2 70.5 (2)
C7—C6—H6 120.5 O1—Cd1—N2 72.21 (18)
N2—C7—C6 123.4 (7) N3—Cd1—Cl1 118.71 (14)
N2—C7—N1 118.2 (6) O1—Cd1—Cl1 97.58 (15)
C6—C7—N1 118.5 (7) N2—Cd1—Cl1 102.58 (15)
N2—C8—C9 122.6 (6) N3—Cd1—Cl2 93.15 (14)
N2—C8—C13 118.0 (6) O1—Cd1—Cl2 100.09 (13)
C9—C8—C13 119.3 (7) N2—Cd1—Cl2 144.10 (15)
C8—C9—C10 116.8 (7) Cl1—Cd1—Cl2 113.26 (8)
C8—C9—C11 119.4 (7) C5—N1—C1 121.7 (6)
C10—C9—C11 123.8 (7) C5—N1—C7 117.2 (6)
C6—C10—C9 119.8 (7) C1—N1—C7 121.0 (6)
C6—C10—H10 120.1 C7—N2—C8 118.4 (6)
C9—C10—H10 120.1 C7—N2—Cd1 125.8 (5)
C12—C11—C9 121.7 (7) C8—N2—Cd1 115.4 (4)
C12—C11—H11 119.2 C17—N3—C13 118.8 (6)
C9—C11—H11 119.2 C17—N3—Cd1 123.5 (5)
C11—C12—C14 120.2 (7) C13—N3—Cd1 117.4 (4)
C11—C12—H12 119.9 C1—O1—Cd1 113.3 (4)
C14—C12—H12 119.9
O1—C1—C2—C3 178.9 (7) N2—C7—N1—C1 −46.0 (9)
N1—C1—C2—C3 −1.8 (10) C6—C7—N1—C1 135.6 (7)
C1—C2—C3—C4 −0.9 (12) C6—C7—N2—C8 1.3 (10)
C2—C3—C4—C5 1.7 (13) N1—C7—N2—C8 −177.0 (6)
C3—C4—C5—N1 0.4 (13) C6—C7—N2—Cd1 −170.8 (5)
C10—C6—C7—N2 −1.5 (11) N1—C7—N2—Cd1 10.9 (9)
C10—C6—C7—N1 176.8 (7) C9—C8—N2—C7 0.1 (10)
N2—C8—C9—C10 −1.2 (10) C13—C8—N2—C7 179.1 (6)
C13—C8—C9—C10 179.8 (6) C9—C8—N2—Cd1 173.0 (5)
N2—C8—C9—C11 179.6 (6) C13—C8—N2—Cd1 −8.0 (7)
C13—C8—C9—C11 0.7 (9) N3—Cd1—N2—C7 −179.8 (6)
C7—C6—C10—C9 0.2 (11) O1—Cd1—N2—C7 30.5 (5)
C8—C9—C10—C6 1.0 (10) Cl1—Cd1—N2—C7 −63.5 (6)
C11—C9—C10—C6 −179.9 (7) Cl2—Cd1—N2—C7 113.1 (5)
C8—C9—C11—C12 −1.0 (11) N3—Cd1—N2—C8 7.9 (4)
C10—C9—C11—C12 179.9 (7) O1—Cd1—N2—C8 −141.8 (5)
C9—C11—C12—C14 −0.2 (11) Cl1—Cd1—N2—C8 124.2 (4)
N2—C8—C13—N3 1.6 (9) Cl2—Cd1—N2—C8 −59.2 (5)
C9—C8—C13—N3 −179.4 (6) C16—C17—N3—C13 1.8 (10)
N2—C8—C13—C14 −178.2 (6) C16—C17—N3—Cd1 175.4 (5)
C9—C8—C13—C14 0.9 (9) C14—C13—N3—C17 −0.3 (9)
N3—C13—C14—C15 −0.6 (10) C8—C13—N3—C17 179.9 (6)
C8—C13—C14—C15 179.1 (6) C14—C13—N3—Cd1 −174.4 (5)
N3—C13—C14—C12 178.2 (6) C8—C13—N3—Cd1 5.9 (7)
C8—C13—C14—C12 −2.1 (10) O1—Cd1—N3—C17 −140.4 (5)
C11—C12—C14—C13 1.8 (10) N2—Cd1—N3—C17 179.1 (6)
C11—C12—C14—C15 −179.4 (7) Cl1—Cd1—N3—C17 85.1 (5)
C13—C14—C15—C16 0.1 (10) Cl2—Cd1—N3—C17 −33.7 (5)
C12—C14—C15—C16 −178.7 (7) O1—Cd1—N3—C13 33.3 (5)
C14—C15—C16—C17 1.2 (11) N2—Cd1—N3—C13 −7.2 (4)
C15—C16—C17—N3 −2.3 (11) Cl1—Cd1—N3—C13 −101.2 (4)
C4—C5—N1—C1 −3.3 (11) Cl2—Cd1—N3—C13 140.0 (4)
C4—C5—N1—C7 174.1 (7) N1—C1—O1—Cd1 59.8 (7)
O1—C1—N1—C5 −176.9 (6) C2—C1—O1—Cd1 −121.0 (6)
C2—C1—N1—C5 3.9 (9) N3—Cd1—O1—C1 −104.1 (5)
O1—C1—N1—C7 5.9 (10) N2—Cd1—O1—C1 −64.0 (5)
C2—C1—N1—C7 −173.4 (6) Cl1—Cd1—O1—C1 36.8 (5)
N2—C7—N1—C5 136.6 (7) Cl2—Cd1—O1—C1 152.2 (5)
C6—C7—N1—C5 −41.8 (9)

Symmetry codes: (i) −x, −y+2, −z; (ii) −x+1, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2426).

References

  1. Bruker (1997). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Liu, Q. S., Liu, L. D. & Shi, J. M. (2008). Acta Cryst. C64, m58–m60. [DOI] [PubMed]
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019740/cv2426sup1.cif

e-64-0m992-sup1.cif (19.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019740/cv2426Isup2.hkl

e-64-0m992-Isup2.hkl (170.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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