4-Carb­oxy-2-methyl-1H-imidazol-3-ium-5-carboxyl­ate monohydrate

Abstract

In the title compound, C₆H₆N₂O₄·H₂O, one carboxyl group is deprotonated and one imidazole N atom is protonated. The organic mol­ecule, excluding methyl H atoms, is essentially planar, with an r.m.s. deviation of 0.0156 (1) Å. In the crystal structure, inter­molecular N—H⋯O hydrogen bonds link mol­ecules into chains along the b axis; these chains are further linked via O—H⋯O hydrogen bonds involving the water O atoms and carboxyl O atoms, generating a two-dimensional supra­molecular framework.

Related literature

For details of related structures, see: Sun et al. (2006 ▶); Nie et al. (2007 ▶). For applications as functional materials, see: Liang et al. (2002 ▶); Qin et al. (2002 ▶); Li et al. (1998 ▶). For biological activities, see: Ucucu et al. (2001 ▶); Maeda et al. (1984 ▶); Quattara et al. (1987 ▶); Seko et al. (1991 ▶). For the synthesis of the title compound, see: Anderson et al. (1989 ▶).

Experimental

Crystal data

• C₆H₆N₂O₄·H₂O

• M _r = 188.14

• Monoclinic,

• a = 8.491 (2) Å

• b = 14.280 (4) Å

• c = 6.5385 (17) Å

• β = 97.386 (5)°

• V = 786.2 (4) ų

• Z = 4

• Mo Kα radiation

• μ = 0.14 mm⁻¹

• T = 295 (2) K

• 0.23 × 0.09 × 0.08 mm

Data collection

• Bruker SMART APEX area-detector diffractometer

• Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T _min = 0.969, T _max = 0.995

• 4506 measured reflections

• 1538 independent reflections

• 1246 reflections with I > 2σ(I)

• R _int = 0.032

Refinement

• R[F ² > 2σ(F ²)] = 0.056

• wR(F ²) = 0.131

• S = 1.05

• 1538 reflections

• 128 parameters

• 4 restraints

• H atoms treated by a mixture of independent and constrained refinement

• Δρ_max = 0.25 e Å⁻³

• Δρ_min = −0.26 e Å⁻³

Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A	D—H	H⋯A	D⋯A	D—H⋯A
O1W—H1WB⋯O4i	0.85 (1)	2.05 (1)	2.887 (3)	168 (4)
O1W—H1WA⋯O3ii	0.85 (1)	2.00 (1)	2.839 (3)	173 (4)
N2—H2⋯O1iii	0.86	1.86	2.716 (3)	176
N1—H1⋯O1W	0.86	1.83	2.689 (3)	177
O3—H3⋯O2	0.86 (1)	1.59 (2)	2.447 (2)	179 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

supplementary crystallographic information

Comment

In recent years, N-heterocyclic carboxylic acids have attracted considerable interest as ligands in metal complexes because of their structural diversity (Nie et al., 2007; Sun et al.) and their potential applications as functional materials (Liang et al., 2002; Qin et al., 2002; Li et al., 1998). Sun et al. (2006) have prepared the inner salt, 4-carboxy-2-(pyridinium-4-yl)-1H-imidazole-5-carboxylate monohydrate; in its crystal structure, one carboxyl group is deprotonated and the pyridyl group is protonated. Nie et al. (2007) have reported the mononuclear complex, diaquabis(5-carboxy-2-methyl-1H-imidazole-4-carboxylate- κ²N³,O⁴)cadmium(II). Imidazole derivatives have a wide range of biological activities such as analgesic (Ucucu et al., 2001), anti-inflammatory (Maeda et al., 1984), antiparasitic (Quattara et al., 1987), antiepileptic and platelet aggregation inhibitors (Seko et al., 1991). I report here the crystal structure of 4-carboxy-2-methyl-1H-3-imidazolium-5-carboxylate monohydrate.

As shown in Fig. 1, the asymmetric unit consists of a neutral C₆H₆N₂O₄ molecule and one water molecule. The organic molecule, excluding methyl hydrogen atoms, is essentially planar, with an r.m.s. deviation of 0.0156 (1) Å. The C1-containing carboxylate group forms an intramolecular hydrogen bond with the neighboring C5-containing carboxyl group.

In the crystal structure, intermolecular N—H···O hydrogen bonds link the molecules into chains along the b axis; these chains are further linked via O—H···O hydrogen bonds involving the water O atoms and carboxyl O atoms, generating a two-dimensional supramolecular framework (Fig. 2).

Experimental

The title compound was synthesized according to a revised procedure (Anderson et al., 1989). 2-Methylimidazole (3.0 g) was added to a mixture of concentrated sulfuric acid (40 ml) and water (30 ml) at 363 K. This was followed by the careful addition of powdered potassium dichromate (22 g). After 30 min the mixture was poured into ice-cold water. The white precipitates were collected by filtration, and washed with water. Recrystallization from hot water afforded colorless block crystals of the title compound. Yield: 1.8 g (44%).

Refinement

The carboxyl and water H atoms were located in a difference Fourier map and refined with U_iso(H) = 1.5U_eq(O). The O—H distances of the water molecule were restrained to 0.85 (1) Å; however, that of the carboxyl was refined freely. All other H-atoms were positioned geometrically and refined using a riding model with C—H (methyl) = 0.96 Å, N—H = 0.86 Å; U_iso(H) = kU_eq(carrier atom), where k = 1.2 for N and 1.5 for C.

Figures

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Packing diagram of the title structure, showing the intermolecular N—H···O and O—H···O hydrogen bonds as dashed lines. Methyl H atoms are omitted for clarity.

Crystal data

C6H6N2O4·H2O	F(000) = 392
Mr = 188.14	Dx = 1.589 Mg m−3
Monoclinic, P21/c	Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc	Cell parameters from 927 reflections
a = 8.491 (2) Å	θ = 2.4–24.3°
b = 14.280 (4) Å	µ = 0.14 mm−1
c = 6.5385 (17) Å	T = 295 K
β = 97.386 (5)°	Block, colorless
V = 786.2 (4) Å3	0.23 × 0.09 × 0.08 mm
Z = 4

Data collection

Bruker SMART APEX area-detector diffractometer	1538 independent reflections
Radiation source: fine-focus sealed tube	1246 reflections with I > 2σ(I)
graphite	Rint = 0.032
φ and ω scans	θmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)	h = −8→10
Tmin = 0.969, Tmax = 0.995	k = −17→17
4506 measured reflections	l = −8→7

Refinement

Refinement on F2	Primary atom site location: structure-invariant direct methods
Least-squares matrix: full	Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056	Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131	H atoms treated by a mixture of independent and constrained refinement
S = 1.05	w = 1/[σ2(Fo2) + (0.0559P)2 + 0.4711P] where P = (Fo2 + 2Fc2)/3
1538 reflections	(Δ/σ)max < 0.001
128 parameters	Δρmax = 0.25 e Å−3
4 restraints	Δρmin = −0.26 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Ų)

	x	y	z	Uiso*/Ueq
O1	0.5312 (2)	0.88207 (11)	0.2430 (3)	0.0404 (5)
O3	0.1439 (2)	0.68027 (12)	0.1429 (3)	0.0430 (5)
H3	0.191 (3)	0.7337 (12)	0.157 (5)	0.065*
N2	0.5293 (2)	0.56877 (13)	0.2531 (3)	0.0287 (5)
H2	0.5126	0.5094	0.2501	0.034*
O2	0.2822 (2)	0.83103 (12)	0.1822 (3)	0.0436 (5)
N1	0.6490 (2)	0.70121 (13)	0.2840 (3)	0.0284 (5)
H1	0.7232	0.7424	0.3045	0.034*
C2	0.4901 (3)	0.72074 (15)	0.2375 (3)	0.0265 (5)
C3	0.4139 (3)	0.63632 (15)	0.2178 (3)	0.0265 (5)
C1	0.4314 (3)	0.81906 (15)	0.2198 (4)	0.0303 (6)
C4	0.6708 (3)	0.60933 (16)	0.2927 (4)	0.0283 (5)
C5	0.2437 (3)	0.61108 (17)	0.1680 (4)	0.0335 (6)
O4	0.2045 (2)	0.52952 (12)	0.1540 (3)	0.0506 (6)
C6	0.8249 (3)	0.56070 (18)	0.3429 (4)	0.0405 (7)
H6A	0.8557	0.5333	0.2199	0.061*
H6B	0.8148	0.5124	0.4425	0.061*
H6C	0.9043	0.6049	0.3987	0.061*
O1W	0.8762 (2)	0.83332 (13)	0.3359 (4)	0.0563 (6)
H1WA	0.961 (3)	0.827 (2)	0.419 (5)	0.084*
H1WB	0.840 (4)	0.8884 (12)	0.345 (5)	0.084*

Atomic displacement parameters (Ų)

	U11	U22	U33	U12	U13	U23
O1	0.0417 (11)	0.0175 (8)	0.0613 (13)	−0.0014 (7)	0.0041 (9)	−0.0002 (8)
O3	0.0293 (10)	0.0278 (10)	0.0697 (14)	−0.0004 (7)	−0.0020 (9)	0.0000 (9)
N2	0.0313 (11)	0.0172 (9)	0.0371 (12)	0.0002 (8)	0.0025 (9)	−0.0009 (8)
O2	0.0360 (11)	0.0272 (9)	0.0664 (14)	0.0062 (8)	0.0025 (9)	0.0008 (8)
N1	0.0287 (11)	0.0206 (10)	0.0351 (11)	−0.0044 (8)	0.0016 (8)	−0.0009 (8)
C2	0.0288 (12)	0.0229 (11)	0.0275 (13)	0.0001 (9)	0.0028 (10)	−0.0002 (9)
C3	0.0330 (13)	0.0200 (11)	0.0267 (12)	0.0015 (9)	0.0042 (10)	0.0005 (9)
C1	0.0380 (14)	0.0214 (12)	0.0315 (14)	0.0013 (10)	0.0046 (10)	0.0005 (9)
C4	0.0304 (13)	0.0230 (12)	0.0311 (13)	−0.0008 (9)	0.0028 (10)	−0.0005 (9)
C5	0.0307 (13)	0.0278 (14)	0.0413 (15)	−0.0016 (10)	0.0023 (11)	0.0009 (10)
O4	0.0399 (11)	0.0261 (10)	0.0835 (16)	−0.0082 (8)	−0.0013 (10)	−0.0008 (9)
C6	0.0346 (14)	0.0309 (13)	0.0551 (18)	0.0050 (11)	0.0019 (12)	0.0018 (12)
O1W	0.0395 (12)	0.0292 (10)	0.0942 (18)	−0.0035 (8)	−0.0148 (11)	0.0009 (11)

Geometric parameters (Å, °)

O1—C1	1.232 (3)	C2—C3	1.367 (3)
O3—C5	1.299 (3)	C2—C1	1.489 (3)
O3—H3	0.861 (10)	C3—C5	1.484 (3)
N2—C4	1.329 (3)	C4—C6	1.481 (3)
N2—C3	1.373 (3)	C5—O4	1.212 (3)
N2—H2	0.8600	C6—H6A	0.9600
O2—C1	1.271 (3)	C6—H6B	0.9600
N1—C4	1.325 (3)	C6—H6C	0.9600
N1—C2	1.373 (3)	O1W—H1WA	0.849 (10)
N1—H1	0.8600	O1W—H1WB	0.850 (10)
C5—O3—H3	112 (2)	O2—C1—C2	117.2 (2)
C4—N2—C3	109.54 (19)	N1—C4—N2	107.8 (2)
C4—N2—H2	125.2	N1—C4—C6	126.1 (2)
C3—N2—H2	125.2	N2—C4—C6	126.2 (2)
C4—N1—C2	109.81 (19)	O4—C5—O3	123.6 (2)
C4—N1—H1	125.1	O4—C5—C3	120.0 (2)
C2—N1—H1	125.1	O3—C5—C3	116.4 (2)
C3—C2—N1	106.37 (19)	C4—C6—H6A	109.5
C3—C2—C1	132.4 (2)	C4—C6—H6B	109.5
N1—C2—C1	121.2 (2)	H6A—C6—H6B	109.5
C2—C3—N2	106.5 (2)	C4—C6—H6C	109.5
C2—C3—C5	132.1 (2)	H6A—C6—H6C	109.5
N2—C3—C5	121.3 (2)	H6B—C6—H6C	109.5
O1—C1—O2	125.4 (2)	H1WA—O1W—H1WB	110 (2)
O1—C1—C2	117.4 (2)
C4—N1—C2—C3	0.1 (3)	C3—C2—C1—O2	1.2 (4)
C4—N1—C2—C1	179.5 (2)	N1—C2—C1—O2	−178.0 (2)
N1—C2—C3—N2	0.0 (2)	C2—N1—C4—N2	−0.1 (3)
C1—C2—C3—N2	−179.3 (2)	C2—N1—C4—C6	−178.7 (2)
N1—C2—C3—C5	−179.6 (2)	C3—N2—C4—N1	0.1 (3)
C1—C2—C3—C5	1.1 (4)	C3—N2—C4—C6	178.7 (2)
C4—N2—C3—C2	−0.1 (3)	C2—C3—C5—O4	178.1 (3)
C4—N2—C3—C5	179.6 (2)	N2—C3—C5—O4	−1.4 (4)
C3—C2—C1—O1	−178.9 (2)	C2—C3—C5—O3	−2.3 (4)
N1—C2—C1—O1	1.9 (3)	N2—C3—C5—O3	178.2 (2)

Hydrogen-bond geometry (Å, °)

D—H···A	D—H	H···A	D···A	D—H···A
O1W—H1WB···O4i	0.85 (1)	2.05 (1)	2.887 (3)	168 (4)
O1W—H1WA···O3ii	0.85 (1)	2.00 (1)	2.839 (3)	173 (4)
N2—H2···O1iii	0.86	1.86	2.716 (3)	176
N1—H1···O1W	0.86	1.83	2.689 (3)	177
O3—H3···O2	0.86 (1)	1.59 (2)	2.447 (2)	179 (3)

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x+1, −y+3/2, z+1/2; (iii) −x+1, y−1/2, −z+1/2.