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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Dec 10;65(Pt 1):o72. doi: 10.1107/S1600536808041032

3-Amino­phenyl naphthalene-1-sulfonate

Jasmine P Vennila a, Helen P Kavitha b, D John Thiruvadigal c, B R Venkatraman d, V Manivannan e,*
PMCID: PMC2967982  PMID: 21581711

Abstract

In the title compound, C16H13NO3S, the plane of the naphthalene ring system forms a dihedral angle of 64.66 (10)° with the benzene ring. The mol­ecular structure is stabilized by weak intra­molecular C—H⋯O inter­actions and the crystal packing is stabilized by weak inter­molecular N—H⋯O and C—H⋯O inter­actions and by π–π stacking inter­actions of the inversion-related naphthalene units [centroid–centroid distance of 3.7373 (14) Å].

Related literature

For the structures of closely related compounds, see: Manivannan et al. (2005a ,b ); Ramachandran et al.(2007); Vennila et al. (2008). For applications, see: Spungin et al. (1984); Yachi et al. (1989).graphic file with name e-65-00o72-scheme1.jpg

Experimental

Crystal data

  • C16H13NO3S

  • M r = 299.33

  • Monoclinic, Inline graphic

  • a = 8.4558 (2) Å

  • b = 8.6712 (3) Å

  • c = 19.5915 (6) Å

  • β = 100.321 (2)°

  • V = 1413.24 (7) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 295 (2) K

  • 0.30 × 0.25 × 0.20 mm

Data collection

  • Bruker Kappa APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.932, T max = 0.954

  • 19808 measured reflections

  • 4981 independent reflections

  • 3126 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.055

  • wR(F 2) = 0.174

  • S = 1.05

  • 4981 reflections

  • 190 parameters

  • H-atom parameters constrained

  • Δρmax = 0.46 e Å−3

  • Δρmin = −0.44 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808041032/gk2179sup1.cif

e-65-00o72-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041032/gk2179Isup2.hkl

e-65-00o72-Isup2.hkl (239KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2⋯O2 0.93 2.41 2.829 (3) 107
C9—H9⋯O3 0.93 2.56 3.127 (3) 120
N1—H1B⋯O3i 0.86 2.43 3.246 (3) 158
C7—H7⋯O2ii 0.93 2.56 3.422 (3) 154

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors acknowledge the Sophisticated Analytical Instrument Facility, Indian Institute of Technology, Madras, for the data collection.

supplementary crystallographic information

Comment

Several compounds containing the para-toluene sulfonate moiety are used in the fields of biology and industry. The merging of lipids can be monitored using a derivative of para-toluene sulfonate (Yachi et al., 1989). This method has been used in studying the membrane fusion during the acrosome reaction (Spungin et al., 1984).

The plane of the benzene ring forms a dihedral angle of 64.66 (10) ° with the naphthalene ring system. The torsion angles O2—S1—C1—C2 and O3—S1—C1—C10 [5.58 (17) ° and 52.09 (16) °, respectively] indicate the syn conformation of sulfonyl moiety. The molecular structure is stabilized by weak intramolecular C—H···O interactions and the crystal packing is stabilized by weak intermolecular C—H···O interactions, N—H···O interactions and π-π stacking interactions of the naphthalene fragments related by inversion center

Experimental

1-Napthalene sulfonyl chloride (5 mmol) dissolved in acetone (4 ml) was added dropwise to 3-amino phenol (5 mmol) in aqueous NaOH (4 ml, 5%) with constant shaking. The precipitated compound (3 mmol, yield 60%) was recrystlized from ethanol to get diffraction quality brown colored crystals.

Refinement

H atoms were positioned geometrically and refined using riding model with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic C—H and N—H = 0.86 Å and Uiso(H) = 1.2Ueq(N) for N—H.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and 50% probability displacement ellipsoids for non-H atoms.

Fig. 2.

Fig. 2.

The packing viewed down the b axis. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted.

Crystal data

C16H13NO3S F(000) = 624
Mr = 299.33 Dx = 1.407 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4818 reflections
a = 8.4558 (2) Å θ = 2.2–25.4°
b = 8.6712 (3) Å µ = 0.24 mm1
c = 19.5915 (6) Å T = 295 K
β = 100.321 (2)° Block, brown
V = 1413.24 (7) Å3 0.30 × 0.25 × 0.20 mm
Z = 4

Data collection

Bruker Kappa APEX2 diffractometer 4981 independent reflections
Radiation source: fine-focus sealed tube 3126 reflections with I > 2σ(I)
graphite Rint = 0.023
ω and φ scans θmax = 32.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −12→10
Tmin = 0.932, Tmax = 0.954 k = −12→11
19808 measured reflections l = −21→29

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.174 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0763P)2 + 0.3485P] where P = (Fo2 + 2Fc2)/3
4981 reflections (Δ/σ)max < 0.001
190 parameters Δρmax = 0.46 e Å3
0 restraints Δρmin = −0.44 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.34222 (19) 0.8581 (2) 0.10826 (8) 0.0475 (4)
C2 0.2573 (3) 0.9698 (3) 0.13547 (12) 0.0688 (6)
H2 0.2543 0.9701 0.1827 0.083*
C3 0.1749 (3) 1.0837 (3) 0.09239 (19) 0.0876 (8)
H3 0.1173 1.1596 0.1109 0.105*
C4 0.1793 (3) 1.0828 (3) 0.02504 (18) 0.0858 (8)
H4 0.1241 1.1593 −0.0029 0.103*
C5 0.2639 (2) 0.9713 (2) −0.00569 (11) 0.0634 (5)
C6 0.2687 (4) 0.9715 (4) −0.07762 (13) 0.0910 (9)
H6 0.2122 1.0468 −0.1058 0.109*
C7 0.3515 (4) 0.8673 (4) −0.10559 (13) 0.1015 (12)
H7 0.3537 0.8711 −0.1529 0.122*
C8 0.4342 (4) 0.7536 (3) −0.06564 (14) 0.0872 (9)
H8 0.4913 0.6808 −0.0863 0.105*
C9 0.4342 (2) 0.7451 (2) 0.00414 (11) 0.0619 (5)
H9 0.4904 0.6666 0.0303 0.074*
C10 0.34948 (19) 0.85482 (19) 0.03643 (8) 0.0458 (4)
C11 0.21070 (19) 0.52112 (19) 0.14424 (9) 0.0466 (4)
C12 0.0822 (2) 0.5617 (2) 0.09445 (10) 0.0595 (5)
H12 0.0949 0.6176 0.0553 0.071*
C13 −0.0674 (2) 0.5150 (3) 0.10555 (12) 0.0696 (6)
H13 −0.1582 0.5414 0.0734 0.084*
C14 −0.0850 (2) 0.4309 (2) 0.16279 (11) 0.0637 (5)
H14 −0.1874 0.4025 0.1692 0.076*
C15 0.0471 (2) 0.3876 (2) 0.21112 (10) 0.0561 (4)
C16 0.1979 (2) 0.4357 (2) 0.20153 (9) 0.0511 (4)
H16 0.2890 0.4101 0.2336 0.061*
O1 0.36734 (15) 0.56180 (15) 0.13433 (7) 0.0580 (3)
O2 0.3993 (2) 0.7447 (2) 0.23185 (7) 0.0915 (6)
O3 0.60456 (18) 0.7106 (2) 0.15880 (10) 0.0903 (6)
N1 0.0316 (3) 0.3014 (3) 0.26868 (11) 0.0868 (6)
H1A −0.0621 0.2733 0.2752 0.104*
H1B 0.1156 0.2758 0.2981 0.104*
S1 0.44040 (6) 0.72128 (7) 0.16539 (2) 0.06166 (18)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0464 (8) 0.0490 (9) 0.0497 (8) −0.0131 (7) 0.0153 (6) −0.0086 (7)
C2 0.0679 (12) 0.0677 (13) 0.0789 (13) −0.0188 (10) 0.0346 (10) −0.0268 (11)
C3 0.0697 (14) 0.0536 (13) 0.144 (3) 0.0011 (10) 0.0312 (15) −0.0233 (15)
C4 0.0699 (14) 0.0511 (12) 0.130 (2) −0.0040 (10) 0.0007 (14) 0.0086 (14)
C5 0.0621 (11) 0.0556 (11) 0.0683 (12) −0.0236 (9) 0.0003 (9) 0.0073 (9)
C6 0.1060 (19) 0.0930 (19) 0.0634 (13) −0.0531 (16) −0.0135 (13) 0.0241 (13)
C7 0.136 (3) 0.118 (2) 0.0525 (13) −0.082 (2) 0.0230 (15) −0.0135 (15)
C8 0.1037 (19) 0.0958 (19) 0.0737 (14) −0.0525 (16) 0.0469 (14) −0.0426 (14)
C9 0.0619 (11) 0.0660 (12) 0.0638 (11) −0.0206 (9) 0.0276 (9) −0.0226 (9)
C10 0.0451 (8) 0.0451 (8) 0.0482 (8) −0.0160 (6) 0.0112 (6) −0.0062 (6)
C11 0.0461 (8) 0.0416 (8) 0.0523 (9) −0.0039 (6) 0.0095 (6) −0.0014 (7)
C12 0.0603 (10) 0.0606 (11) 0.0536 (10) −0.0068 (9) −0.0006 (8) 0.0050 (8)
C13 0.0519 (10) 0.0769 (14) 0.0725 (13) −0.0074 (9) −0.0091 (9) −0.0047 (11)
C14 0.0522 (10) 0.0598 (11) 0.0798 (13) −0.0175 (8) 0.0139 (9) −0.0150 (10)
C15 0.0643 (10) 0.0438 (9) 0.0640 (11) −0.0099 (8) 0.0214 (9) −0.0058 (8)
C16 0.0524 (9) 0.0452 (9) 0.0546 (9) −0.0002 (7) 0.0068 (7) 0.0035 (7)
O1 0.0501 (6) 0.0556 (7) 0.0704 (8) −0.0023 (5) 0.0165 (6) 0.0074 (6)
O2 0.1164 (14) 0.1138 (14) 0.0419 (7) −0.0494 (11) 0.0078 (8) −0.0014 (8)
O3 0.0456 (8) 0.1086 (14) 0.1099 (14) −0.0144 (8) −0.0046 (8) 0.0307 (11)
N1 0.0905 (14) 0.0891 (15) 0.0865 (14) −0.0159 (11) 0.0316 (11) 0.0238 (11)
S1 0.0536 (3) 0.0762 (4) 0.0524 (3) −0.0199 (2) 0.00177 (19) 0.0072 (2)

Geometric parameters (Å, °)

C1—C2 1.370 (3) C9—H9 0.9300
C1—C10 1.420 (2) C11—C16 1.365 (2)
C1—S1 1.7368 (19) C11—C12 1.370 (2)
C2—C3 1.401 (4) C11—O1 1.4173 (19)
C2—H2 0.9300 C12—C13 1.382 (3)
C3—C4 1.327 (4) C12—H12 0.9300
C3—H3 0.9300 C13—C14 1.368 (3)
C4—C5 1.401 (4) C13—H13 0.9300
C4—H4 0.9300 C14—C15 1.381 (3)
C5—C6 1.417 (3) C14—H14 0.9300
C5—C10 1.418 (3) C15—N1 1.378 (3)
C6—C7 1.321 (5) C15—C16 1.386 (2)
C6—H6 0.9300 C16—H16 0.9300
C7—C8 1.370 (5) O1—S1 1.5905 (14)
C7—H7 0.9300 O2—S1 1.4212 (16)
C8—C9 1.369 (3) O3—S1 1.4199 (16)
C8—H8 0.9300 N1—H1A 0.8600
C9—C10 1.408 (3) N1—H1B 0.8600
C2—C1—C10 121.24 (18) C5—C10—C1 117.02 (17)
C2—C1—S1 117.12 (15) C16—C11—C12 123.72 (16)
C10—C1—S1 121.63 (13) C16—C11—O1 117.47 (15)
C1—C2—C3 120.2 (2) C12—C11—O1 118.71 (16)
C1—C2—H2 119.9 C11—C12—C13 116.40 (18)
C3—C2—H2 119.9 C11—C12—H12 121.8
C4—C3—C2 119.7 (2) C13—C12—H12 121.8
C4—C3—H3 120.2 C14—C13—C12 121.48 (18)
C2—C3—H3 120.2 C14—C13—H13 119.3
C3—C4—C5 122.6 (2) C12—C13—H13 119.3
C3—C4—H4 118.7 C13—C14—C15 120.92 (18)
C5—C4—H4 118.7 C13—C14—H14 119.5
C4—C5—C6 122.3 (3) C15—C14—H14 119.5
C4—C5—C10 119.2 (2) N1—C15—C14 121.64 (19)
C6—C5—C10 118.5 (2) N1—C15—C16 119.91 (19)
C7—C6—C5 121.6 (3) C14—C15—C16 118.43 (17)
C7—C6—H6 119.2 C11—C16—C15 119.01 (16)
C5—C6—H6 119.2 C11—C16—H16 120.5
C6—C7—C8 120.6 (2) C15—C16—H16 120.5
C6—C7—H7 119.7 C11—O1—S1 118.20 (11)
C8—C7—H7 119.7 C15—N1—H1A 120.0
C9—C8—C7 121.2 (3) C15—N1—H1B 120.0
C9—C8—H8 119.4 H1A—N1—H1B 120.0
C7—C8—H8 119.4 O3—S1—O2 119.75 (11)
C8—C9—C10 120.2 (2) O3—S1—O1 103.16 (10)
C8—C9—H9 119.9 O2—S1—O1 109.45 (9)
C10—C9—H9 119.9 O3—S1—C1 110.36 (9)
C9—C10—C5 117.90 (18) O2—S1—C1 108.99 (11)
C9—C10—C1 125.09 (18) O1—S1—C1 103.85 (7)
C10—C1—C2—C3 0.2 (3) C16—C11—C12—C13 1.8 (3)
S1—C1—C2—C3 −179.87 (16) O1—C11—C12—C13 178.00 (17)
C1—C2—C3—C4 0.1 (3) C11—C12—C13—C14 −0.9 (3)
C2—C3—C4—C5 0.1 (4) C12—C13—C14—C15 −1.0 (3)
C3—C4—C5—C6 −179.7 (2) C13—C14—C15—N1 −179.3 (2)
C3—C4—C5—C10 −0.5 (3) C13—C14—C15—C16 2.1 (3)
C4—C5—C6—C7 178.7 (2) C12—C11—C16—C15 −0.7 (3)
C10—C5—C6—C7 −0.6 (3) O1—C11—C16—C15 −176.96 (15)
C5—C6—C7—C8 0.9 (4) N1—C15—C16—C11 −179.90 (18)
C6—C7—C8—C9 −0.4 (4) C14—C15—C16—C11 −1.3 (3)
C7—C8—C9—C10 −0.5 (3) C16—C11—O1—S1 −91.61 (17)
C8—C9—C10—C5 0.8 (3) C12—C11—O1—S1 91.97 (18)
C8—C9—C10—C1 −179.44 (16) C11—O1—S1—O3 168.69 (12)
C4—C5—C10—C9 −179.52 (17) C11—O1—S1—O2 40.15 (16)
C6—C5—C10—C9 −0.3 (2) C11—O1—S1—C1 −76.12 (13)
C4—C5—C10—C1 0.7 (2) C2—C1—S1—O3 −127.86 (16)
C6—C5—C10—C1 179.93 (16) C10—C1—S1—O3 52.09 (16)
C2—C1—C10—C9 179.68 (17) C2—C1—S1—O2 5.58 (17)
S1—C1—C10—C9 −0.3 (2) C10—C1—S1—O2 −174.48 (13)
C2—C1—C10—C5 −0.6 (2) C2—C1—S1—O1 122.16 (14)
S1—C1—C10—C5 179.50 (12) C10—C1—S1—O1 −57.89 (14)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C2—H2···O2 0.93 2.41 2.829 (3) 107
C9—H9···O3 0.93 2.56 3.127 (3) 120
N1—H1B···O3i 0.86 2.43 3.246 (3) 158
C7—H7···O2ii 0.93 2.56 3.422 (3) 154

Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x, −y+3/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2179).

References

  1. Bruker (2004). APEX2 andSAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Manivannan, V., Vembu, N., Nallu, M., Sivakumar, K. & Fronczek, F. R. (2005a). Acta Cryst. E61, o239–o241.
  3. Manivannan, V., Vembu, N., Nallu, M., Sivakumar, K. & Fronczek, F. R. (2005b). Acta Cryst. E61, o242–o244.
  4. Ramachandran, G., Kanakam, C. C., Manivannan, V., Thiruvenkatam, V. & Row, T. N. G. (2007). Acta Cryst. E63, o4638.
  5. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
  8. Spungin, B., Levinshal, T., Rubenstein, S. & Breitbart, H. (1984). Biochim. Biophys. Acta, 769, 531–542.
  9. Vennila, J. P., Kavitha, H. P., Thiruvadigal, D. J., Venkatraman, B. R. & Manivannan, V. (2008). Acta Cryst. E64, o1848. [DOI] [PMC free article] [PubMed]
  10. Yachi, K., Sugiyama, Y., Sawada, Y., Iga, T., Ikeda, Y., Toda, G. & Hananon, M. (1989). Biochim. Biophys. Acta, 978, 1–7. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808041032/gk2179sup1.cif

e-65-00o72-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041032/gk2179Isup2.hkl

e-65-00o72-Isup2.hkl (239KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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