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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Dec 13;65(Pt 1):o106. doi: 10.1107/S1600536808041627

2,3,5-Triphenyl­pyrazine

N Anuradha a, A Thiruvalluvar a,*, K Pandiarajan b, S Chitra b, R J Butcher c
PMCID: PMC2968030  PMID: 21581569

Abstract

In the title mol­ecule, C22H16N2, the pyrazine ring deviates very slightly from planarity [maximum deviation 0.044 (3) Å], tending towards a twist-boat conformation. The phenyl ring at position 3 makes dihedral angles of 64.0 (2) and 45.8 (2)°, respectively, with the phenyl rings at positions 2 and 5. The dihedral angle between the phenyl rings at positions 2 and 5 is 49.7 (2)°. A C—H⋯π inter­action is found in the crystal structure, but no classical hydrogen bonds form.

Related literature

For the biological properties of pyrazines, see: Foks et al. (2004); Premkumar & Govindarajan (2005); Sondhi et al. (2005).graphic file with name e-65-0o106-scheme1.jpg

Experimental

Crystal data

  • C22H16N2

  • M r = 308.37

  • Orthorhombic, Inline graphic

  • a = 15.563 (2) Å

  • b = 6.2005 (9) Å

  • c = 16.845 (3) Å

  • V = 1625.5 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.07 mm−1

  • T = 296 (2) K

  • 0.44 × 0.35 × 0.21 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2004) T min = 0.968, T max = 0.985

  • 17890 measured reflections

  • 1730 independent reflections

  • 1109 reflections with I > 2σ(I)

  • R int = 0.091

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.129

  • S = 1.02

  • 1730 reflections

  • 218 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.13 e Å−3

  • Δρmin = −0.13 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT-NT (Bruker, 2004); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2003).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041627/wn2297sup1.cif

e-65-0o106-sup1.cif (21.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041627/wn2297Isup2.hkl

e-65-0o106-Isup2.hkl (83.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C53—H53⋯Cgi 0.93 2.98 3.909 (5) 174

Symmetry code: (i) Inline graphic. Cg is the centroid of the C21–C26 phenyl ring.

Acknowledgments

AT thanks the UGC, India, for the award of a Minor Research Project [File No. MRP-2355/06(UGC-SERO), Link No. 2355, 10/01/2007]. RJB acknowledges the NSF–MRI program for funding to purchase the X-ray CCD diffractometer.

supplementary crystallographic information

Comment

Pyrazines are heterocycles which exhibit nutty, roasted or earth flavouring agents. 2-Cyanopyrazine derivatives show anticancer, anti-inflammatory and analgesic activities (Sondhi et al., 2005). Pyrazine derivatives exhibit tuberculostatic activity (Foks et al., 2004) and antimicrobial activity (Premkumar & Govindarajan, 2005).

In the title molecule, C22H16N2, (Fig. 1), the pyrazine ring deviates very slightly from planarity, tending towards a twist-boat conformation. The phenyl ring at position 3 makes dihedral angles of 64.0 (2)° and 45.8 (2)° with the phenyl rings at positions 2 and 5, respectively. The dihedral angle between the phenyl rings at positions 2 and 5 is 49.7 (2)°. A C53—H53···π interaction involving the phenyl (C21–C26) ring at position 2 is found in the crystal structure, but no classical hydrogen bonds.

Experimental

To a homogeneous solution of benzil (1.05 g, 0.005 mol) and 1-phenylethanediamine dihydrochloride (1.04 g, 0.005 mol) in ethanol, sodium acetate trihydrate (2.04 g, 0.015 mol) was added. The precipitated sodium chloride was filtered off and the filtrate was refluxed for 2 h. On completion of the reaction, as indicated by TLC, the reaction mixture was poured into crushed ice and the resulting solid was filtered off and purified by column chromatography on silica gel. Elution with benzene: petroleum ether (4:1 v/v) at 333–353 K gave the product in pure form. Yield 1.6 g (80%).

Refinement

H atoms were positioned geometrically and allowed to ride on their parent atoms, with C—H = 0.93 Å and Uiso(H) = 1.2 times Ueq(C). In the absence of significant anomalous scattering effects Friedel pairs have been merged.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atom-numbering scheme and displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius.

Crystal data

C22H16N2 Dx = 1.260 Mg m3
Mr = 308.37 Melting point: 421 K
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 2955 reflections
a = 15.563 (2) Å θ = 2.4–21.2°
b = 6.2005 (9) Å µ = 0.07 mm1
c = 16.845 (3) Å T = 296 K
V = 1625.5 (4) Å3 Chunk, colourless
Z = 4 0.44 × 0.35 × 0.21 mm
F(000) = 648

Data collection

Bruker APEXII CCD diffractometer 1730 independent reflections
Radiation source: fine-focus sealed tube 1109 reflections with I > 2σ(I)
graphite Rint = 0.091
φ and ω scans θmax = 26.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004) h = −19→19
Tmin = 0.968, Tmax = 0.985 k = −7→7
17890 measured reflections l = −20→19

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050 H-atom parameters constrained
wR(F2) = 0.129 w = 1/[σ2(Fo2) + (0.0653P)2 + 0.1081P] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max = 0.001
1730 reflections Δρmax = 0.13 e Å3
218 parameters Δρmin = −0.13 e Å3
1 restraint Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.015 (3)

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.2355 (2) 0.1296 (5) 0.19242 (19) 0.0547 (12)
N4 0.3436 (2) −0.1252 (5) 0.10173 (19) 0.0487 (11)
C2 0.2412 (3) 0.1612 (5) 0.1141 (2) 0.0463 (12)
C3 0.3009 (3) 0.0395 (6) 0.0686 (2) 0.0447 (12)
C5 0.3329 (3) −0.1640 (6) 0.1791 (2) 0.0477 (12)
C6 0.2822 (3) −0.0252 (7) 0.2244 (3) 0.0557 (14)
C21 0.1810 (3) 0.3188 (6) 0.0793 (2) 0.0480 (12)
C22 0.1658 (3) 0.5110 (6) 0.1192 (3) 0.0547 (16)
C23 0.1074 (3) 0.6577 (7) 0.0897 (3) 0.0670 (17)
C24 0.0622 (3) 0.6125 (8) 0.0212 (3) 0.0717 (17)
C25 0.0760 (3) 0.4218 (8) −0.0185 (3) 0.0683 (19)
C26 0.1359 (3) 0.2775 (8) 0.0110 (3) 0.0610 (17)
C31 0.3243 (3) 0.0908 (7) −0.0142 (2) 0.0500 (14)
C32 0.3486 (3) 0.2977 (7) −0.0358 (3) 0.0583 (16)
C33 0.3772 (3) 0.3414 (7) −0.1116 (3) 0.0653 (17)
C34 0.3783 (3) 0.1810 (8) −0.1676 (3) 0.0660 (17)
C35 0.3525 (3) −0.0229 (8) −0.1474 (3) 0.0687 (17)
C36 0.3261 (3) −0.0692 (6) −0.0714 (2) 0.0577 (16)
C51 0.3770 (3) −0.3528 (6) 0.2136 (2) 0.0483 (12)
C52 0.4302 (3) −0.4792 (7) 0.1662 (3) 0.0610 (17)
C53 0.4682 (3) −0.6620 (7) 0.1961 (3) 0.0730 (19)
C54 0.4543 (3) −0.7247 (8) 0.2734 (3) 0.0747 (19)
C55 0.4017 (4) −0.6012 (8) 0.3210 (3) 0.0770 (19)
C56 0.3635 (3) −0.4195 (7) 0.2911 (3) 0.0667 (17)
H6 0.28114 −0.04259 0.27921 0.0669*
H22 0.19510 0.54089 0.16601 0.0653*
H23 0.09840 0.78757 0.11605 0.0803*
H24 0.02234 0.71109 0.00186 0.0859*
H25 0.04549 0.39011 −0.06447 0.0819*
H26 0.14584 0.14928 −0.01612 0.0727*
H32 0.34552 0.40842 0.00137 0.0699*
H33 0.39584 0.47943 −0.12464 0.0783*
H34 0.39640 0.21058 −0.21902 0.0788*
H35 0.35281 −0.13135 −0.18555 0.0820*
H36 0.30936 −0.20876 −0.05833 0.0693*
H52 0.44015 −0.43949 0.11371 0.0731*
H53 0.50365 −0.74446 0.16366 0.0872*
H54 0.48007 −0.84883 0.29325 0.0894*
H55 0.39220 −0.64112 0.37352 0.0927*
H56 0.32749 −0.33888 0.32367 0.0800*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.062 (2) 0.052 (2) 0.050 (2) 0.0055 (17) 0.0027 (16) −0.0004 (16)
N4 0.0533 (19) 0.0458 (18) 0.047 (2) 0.0009 (15) 0.0024 (15) 0.0030 (15)
C2 0.057 (2) 0.042 (2) 0.040 (2) −0.0052 (18) 0.0015 (17) −0.0036 (18)
C3 0.055 (2) 0.039 (2) 0.040 (2) 0.0020 (18) 0.0004 (16) −0.0025 (16)
C5 0.055 (2) 0.047 (2) 0.041 (2) −0.0069 (18) −0.0003 (17) 0.0022 (18)
C6 0.069 (3) 0.057 (2) 0.041 (2) −0.002 (2) −0.0020 (19) −0.001 (2)
C21 0.051 (2) 0.047 (2) 0.046 (2) −0.0008 (17) 0.0017 (18) −0.0008 (18)
C22 0.060 (3) 0.050 (2) 0.054 (3) 0.000 (2) 0.0030 (19) −0.0013 (19)
C23 0.067 (3) 0.055 (3) 0.079 (3) 0.011 (2) 0.007 (3) 0.001 (2)
C24 0.066 (3) 0.077 (3) 0.072 (3) 0.013 (3) 0.002 (3) 0.008 (3)
C25 0.067 (3) 0.085 (4) 0.053 (3) 0.012 (3) −0.006 (2) 0.004 (2)
C26 0.067 (3) 0.062 (3) 0.054 (3) 0.002 (2) −0.004 (2) −0.002 (2)
C31 0.054 (2) 0.054 (3) 0.042 (2) 0.0078 (19) −0.0010 (18) 0.0036 (18)
C32 0.077 (3) 0.047 (2) 0.051 (3) 0.003 (2) 0.009 (2) 0.002 (2)
C33 0.077 (3) 0.056 (3) 0.063 (3) 0.006 (2) 0.012 (2) 0.015 (2)
C34 0.076 (3) 0.076 (3) 0.046 (3) 0.015 (3) 0.009 (2) 0.014 (3)
C35 0.089 (3) 0.070 (3) 0.047 (3) 0.017 (3) 0.001 (2) −0.006 (2)
C36 0.079 (3) 0.046 (2) 0.048 (3) 0.009 (2) 0.001 (2) −0.004 (2)
C51 0.049 (2) 0.045 (2) 0.051 (2) −0.0034 (18) −0.0025 (18) 0.0050 (19)
C52 0.064 (3) 0.056 (3) 0.063 (3) −0.001 (2) 0.005 (2) 0.013 (2)
C53 0.066 (3) 0.061 (3) 0.092 (4) 0.012 (2) 0.008 (3) 0.011 (3)
C54 0.075 (3) 0.056 (3) 0.093 (4) 0.007 (3) −0.019 (3) 0.019 (3)
C55 0.098 (4) 0.072 (3) 0.061 (3) 0.010 (3) −0.013 (3) 0.012 (3)
C56 0.085 (3) 0.064 (3) 0.051 (3) 0.013 (2) −0.010 (2) 0.006 (2)

Geometric parameters (Å, °)

N1—C2 1.337 (5) C51—C56 1.386 (6)
N1—C6 1.319 (6) C52—C53 1.374 (6)
N4—C3 1.340 (5) C53—C54 1.376 (7)
N4—C5 1.336 (5) C54—C55 1.378 (7)
C2—C3 1.421 (6) C55—C56 1.370 (7)
C2—C21 1.475 (6) C6—H6 0.9300
C3—C31 1.476 (5) C22—H22 0.9300
C5—C6 1.395 (6) C23—H23 0.9300
C5—C51 1.476 (6) C24—H24 0.9300
C21—C22 1.389 (6) C25—H25 0.9300
C21—C26 1.372 (6) C26—H26 0.9300
C22—C23 1.379 (6) C32—H32 0.9300
C23—C24 1.380 (7) C33—H33 0.9300
C24—C25 1.375 (7) C34—H34 0.9300
C25—C26 1.384 (7) C35—H35 0.9300
C31—C32 1.386 (6) C36—H36 0.9300
C31—C36 1.383 (5) C52—H52 0.9300
C32—C33 1.379 (7) C53—H53 0.9300
C33—C34 1.371 (7) C54—H54 0.9300
C34—C35 1.370 (7) C55—H55 0.9300
C35—C36 1.375 (6) C56—H56 0.9300
C51—C52 1.392 (6)
N1···N4 2.768 (4) C34···H54viii 3.0900
N4···N1 2.768 (4) C35···H54viii 2.9000
N1···H22 2.6600 C35···H56v 3.0600
N1···H35i 2.8800 C51···H22ii 3.0200
N4···H36 2.8000 C52···H23vii 3.0000
N4···H52 2.4700 C56···H6 2.6700
C5···C22ii 3.441 (6) H6···C56 2.6700
C6···C34iii 3.587 (7) H6···H56 2.1100
C6···C54iv 3.366 (7) H22···N1 2.6600
C21···C32 3.253 (6) H22···C5iv 2.8300
C22···C5iv 3.441 (6) H22···C51iv 3.0200
C26···C32 3.405 (7) H23···C52ix 3.0000
C26···C31 3.181 (7) H25···C33ix 3.0900
C31···C26 3.181 (7) H26···C3 2.8900
C32···C26 3.405 (7) H26···C31 2.8000
C32···C21 3.253 (6) H32···C2 2.9300
C34···C6v 3.587 (7) H32···C21 2.9300
C35···C56v 3.576 (7) H32···H52iv 2.5800
C54···C6ii 3.366 (7) H35···N1x 2.8800
C56···C35iii 3.576 (7) H36···N4 2.8000
C2···H32 2.9300 H52···N4 2.4700
C3···H26 2.8900 H52···H32ii 2.5800
C5···H22ii 2.8300 H54···C34xi 3.0900
C6···H56 2.6600 H54···C35xi 2.9000
C21···H32 2.9300 H55···C24xii 3.0000
C24···H55vi 3.0000 H56···C6 2.6600
C31···H26 2.8000 H56···H6 2.1100
C33···H25vii 3.0900 H56···C35iii 3.0600
C2—N1—C6 118.2 (4) C54—C55—C56 120.1 (5)
C3—N4—C5 118.8 (3) C51—C56—C55 121.8 (4)
N1—C2—C3 119.9 (3) N1—C6—H6 119.00
N1—C2—C21 116.6 (3) C5—C6—H6 119.00
C3—C2—C21 123.5 (3) C21—C22—H22 120.00
N4—C3—C2 120.3 (3) C23—C22—H22 120.00
N4—C3—C31 115.8 (4) C22—C23—H23 120.00
C2—C3—C31 123.8 (3) C24—C23—H23 120.00
N4—C5—C6 119.6 (4) C23—C24—H24 120.00
N4—C5—C51 118.0 (3) C25—C24—H24 120.00
C6—C5—C51 122.5 (3) C24—C25—H25 120.00
N1—C6—C5 122.5 (4) C26—C25—H25 120.00
C2—C21—C22 119.0 (3) C21—C26—H26 119.00
C2—C21—C26 122.3 (4) C25—C26—H26 119.00
C22—C21—C26 118.6 (4) C31—C32—H32 119.00
C21—C22—C23 120.3 (4) C33—C32—H32 120.00
C22—C23—C24 120.2 (4) C32—C33—H33 120.00
C23—C24—C25 120.1 (4) C34—C33—H33 120.00
C24—C25—C26 119.1 (5) C33—C34—H34 120.00
C21—C26—C25 121.7 (4) C35—C34—H34 120.00
C3—C31—C32 121.0 (4) C34—C35—H35 120.00
C3—C31—C36 120.6 (4) C36—C35—H35 120.00
C32—C31—C36 118.4 (4) C31—C36—H36 120.00
C31—C32—C33 120.9 (4) C35—C36—H36 120.00
C32—C33—C34 119.9 (4) C51—C52—H52 120.00
C33—C34—C35 119.7 (5) C53—C52—H52 120.00
C34—C35—C36 120.8 (4) C52—C53—H53 120.00
C31—C36—C35 120.3 (4) C54—C53—H53 120.00
C5—C51—C52 119.8 (3) C53—C54—H54 120.00
C5—C51—C56 122.5 (4) C55—C54—H54 120.00
C52—C51—C56 117.6 (4) C54—C55—H55 120.00
C51—C52—C53 120.7 (4) C56—C55—H55 120.00
C52—C53—C54 120.8 (4) C51—C56—H56 119.00
C53—C54—C55 119.1 (5) C55—C56—H56 119.00
C6—N1—C2—C3 −4.3 (6) C2—C21—C22—C23 −177.5 (4)
C6—N1—C2—C21 173.4 (4) C26—C21—C22—C23 −0.9 (7)
C2—N1—C6—C5 −3.9 (6) C2—C21—C26—C25 176.3 (4)
C5—N4—C3—C2 −4.0 (6) C22—C21—C26—C25 −0.2 (7)
C5—N4—C3—C31 172.3 (4) C21—C22—C23—C24 1.4 (7)
C3—N4—C5—C6 −4.0 (6) C22—C23—C24—C25 −0.8 (7)
C3—N4—C5—C51 176.9 (4) C23—C24—C25—C26 −0.3 (7)
N1—C2—C3—N4 8.5 (6) C24—C25—C26—C21 0.8 (7)
N1—C2—C3—C31 −167.5 (4) C3—C31—C32—C33 174.6 (4)
C21—C2—C3—N4 −169.0 (4) C36—C31—C32—C33 −2.6 (7)
C21—C2—C3—C31 15.0 (6) C3—C31—C36—C35 −176.4 (4)
N1—C2—C21—C22 42.2 (6) C32—C31—C36—C35 0.8 (7)
N1—C2—C21—C26 −134.2 (4) C31—C32—C33—C34 2.8 (7)
C3—C2—C21—C22 −140.2 (4) C32—C33—C34—C35 −1.3 (7)
C3—C2—C21—C26 43.4 (6) C33—C34—C35—C36 −0.5 (7)
N4—C3—C31—C32 −126.1 (4) C34—C35—C36—C31 0.7 (7)
N4—C3—C31—C36 51.0 (6) C5—C51—C52—C53 −176.5 (4)
C2—C3—C31—C32 50.0 (7) C56—C51—C52—C53 −0.6 (7)
C2—C3—C31—C36 −132.9 (5) C5—C51—C56—C55 176.7 (5)
N4—C5—C6—N1 8.4 (7) C52—C51—C56—C55 0.9 (7)
C51—C5—C6—N1 −172.6 (4) C51—C52—C53—C54 0.3 (7)
N4—C5—C51—C52 2.3 (6) C52—C53—C54—C55 −0.2 (7)
N4—C5—C51—C56 −173.5 (4) C53—C54—C55—C56 0.5 (8)
C6—C5—C51—C52 −176.8 (4) C54—C55—C56—C51 −0.9 (8)
C6—C5—C51—C56 7.5 (7)

Symmetry codes: (i) −x+1/2, y+1/2, z+1/2; (ii) x, y−1, z; (iii) −x+1/2, y−1/2, z+1/2; (iv) x, y+1, z; (v) −x+1/2, y+1/2, z−1/2; (vi) −x+1/2, y+3/2, z−1/2; (vii) x+1/2, −y+1/2, z; (viii) −x+1, −y−1, z−1/2; (ix) x−1/2, −y+1/2, z; (x) −x+1/2, y−1/2, z−1/2; (xi) −x+1, −y−1, z+1/2; (xii) −x+1/2, y−3/2, z+1/2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C53—H53···Cgxiii 0.93 2.98 3.909 (5) 174

Symmetry codes: (xiii) x+1/2, −y−1/2, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: WN2297).

References

  1. Bruker (2004). APEX2, SAINT-NT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  3. Foks, H., Trapkaoska, I., Janowiec, M., Zwolska, Z. & Augustynowicz-Kopec, E. (2004). Chem. Heterocycl. Cmpd, 40, 1185–1193.
  4. Premkumar, T. & Govindarajan, S. (2005). World J. Microbiol. Biotechnol.21, 479–480.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Sondhi, S. M., Singh, N., Rajvanshi, S. & Johar, M. (2005). Indian J. Chem.44B, 387–399.
  7. Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041627/wn2297sup1.cif

e-65-0o106-sup1.cif (21.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041627/wn2297Isup2.hkl

e-65-0o106-Isup2.hkl (83.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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