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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Dec 17;65(Pt 1):o131. doi: 10.1107/S1600536808041962

4-Amino-3-ammonio­pyridinium dichloride

Jian-Hua Qin a,*, Jian-Ge Wang a
PMCID: PMC2968050  PMID: 21581592

Abstract

The anions and cations of the title compound, C5H9N3 2+·2Cl, are connected by two chloride-bridged three-centered N—H⋯Cl hydrogen bonds into a three-dimensional network. The aromatic rings are not involved in stacking inter­actions.

Related literature

For bond distances and angles in pyridine, derived from microwave spectra, see: Sørensen et al. (1974). For details of the N—H⋯Cl hydrogen bond in 4,4′-bipyridine compounds, see: Iyere et al. (2003). For N—H⋯Cl and secondary inter­actions in pyridinium chlorides, see: Jones et al. (2002); in 4-acetyl­pyridinium chloride, see: Kochel (2005). For N—H⋯Cl and O—H⋯Cl contacts in a triphenyl-pyridinium chloride (1/1) adduct, see: Sykora & Cioffi (2007).graphic file with name e-65-0o131-scheme1.jpg

Experimental

Crystal data

  • C5H9N3 2+·2Cl

  • M r = 182.05

  • Monoclinic, Inline graphic

  • a = 8.362 (2) Å

  • b = 7.3218 (19) Å

  • c = 13.239 (3) Å

  • β = 92.065 (4)°

  • V = 810.0 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.73 mm−1

  • T = 296 (2) K

  • 0.41 × 0.31 × 0.07 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1997) T min = 0.734, T max = 0.948

  • 3949 measured reflections

  • 1494 independent reflections

  • 1345 reflections with I > 2σ(I)

  • R int = 0.014

Refinement

  • R[F 2 > 2σ(F 2)] = 0.025

  • wR(F 2) = 0.068

  • S = 1.14

  • 1494 reflections

  • 92 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808041962/si2142sup1.cif

e-65-0o131-sup1.cif (12.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041962/si2142Isup2.hkl

e-65-0o131-Isup2.hkl (73.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯Cl2i 0.89 2.22 3.1142 (15) 178
N1—H1B⋯Cl2ii 0.89 2.37 3.1754 (16) 151
N1—H1C⋯Cl1iii 0.89 2.23 3.0790 (16) 160
N2—H2A⋯Cl1ii 0.86 2.39 3.2188 (17) 163
N2—H2B⋯Cl1iv 0.86 2.42 3.2672 (17) 168
N3—H3⋯Cl2 0.86 2.59 3.2499 (16) 135
N3—H3⋯Cl2v 0.86 2.70 3.3198 (16) 130

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

The authors thank Luo Yang Normal University for supporting this work.

supplementary crystallographic information

Comment

The title compound is a salt containing a diprotonated 3,4-diaminopyridine cation and two Cl- anions (Fig. 1). The C1—N3—C5 bond angle is wider than that in pyridine (116.94 (3)°; Sørensen et al., 1974) which indicates that the pyridine ring N atom is protonated (Table 1). Also, the 4-amino N atom is protonated. The projection of the crystal packing along the b axis is shown in Fig. 2. The Cl- anions and the 3,4-diaminopyridinium cations in the title compound are bonded by two chlorine-bridged, three-centered N—H···Cl hydrogen bonds into a three-dimensional network (Fig. 2, Table 2). Example structures of related compounds with two- and three-centered N—H···Cl hydrogen bonds are discussed by Iyere et al. (2003); Jones et al. (2002); Kochel (2005) and Sykora & Cioffi (2007).

Experimental

3,4-diaminopyridine (0.01 mmol) and HCl (0.02 mmol) in 10 ml ethanol. Suitable crystals for X-ray analysis, were grown by allowing the solution to slowly evaporate for 15 days, and were subsequently filtered off, washed with methanol and dried under air.

Refinement

H atoms were constrained to idealized positions and refined using a riding model, with C—H distances of 0.93 Å [Uiso(H) = 1.2Ueq(C)], and NH distances of 0.86 Å for NH2 [Uiso(H) = 1.2Ueq(N)] and 0.89 Å for NH3 [Uiso(H) = 1.5Ueq(N)].

Figures

Fig. 1.

Fig. 1.

A view of the asymmetric unit of (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

A view of the title compound packing down the b axis.

Crystal data

C5H9N32+·2Cl F(000) = 376
Mr = 182.05 Dx = 1.493 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2439 reflections
a = 8.362 (2) Å θ = 3.1–28.2°
b = 7.3218 (19) Å µ = 0.73 mm1
c = 13.239 (3) Å T = 296 K
β = 92.065 (4)° Block, colorless
V = 810.0 (4) Å3 0.41 × 0.31 × 0.07 mm
Z = 4

Data collection

Bruker SMART CCD area-detector diffractometer 1494 independent reflections
Radiation source: fine-focus sealed tube 1345 reflections with I > 2σ(I)
graphite Rint = 0.014
φ and ω scans θmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 1997) h = −10→9
Tmin = 0.734, Tmax = 0.948 k = −6→8
3949 measured reflections l = −16→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.068 H-atom parameters constrained
S = 1.14 w = 1/[σ2(Fo2) + (0.0285P)2 + 0.2927P] where P = (Fo2 + 2Fc2)/3
1494 reflections (Δ/σ)max = 0.001
92 parameters Δρmax = 0.24 e Å3
0 restraints Δρmin = −0.24 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.05806 (5) 0.10977 (6) 0.30663 (3) 0.03884 (15)
Cl2 0.51526 (5) 0.00029 (6) 0.35359 (3) 0.03603 (14)
N1 0.26647 (16) 0.68257 (19) 0.30328 (10) 0.0320 (3)
H1A 0.3291 0.6281 0.2594 0.048*
H1B 0.3026 0.7949 0.3160 0.048*
H1C 0.1670 0.6887 0.2772 0.048*
N2 0.11914 (19) 0.8105 (2) 0.48188 (12) 0.0439 (4)
H2A 0.1182 0.8773 0.4284 0.053*
H2B 0.0737 0.8485 0.5352 0.053*
N3 0.33856 (18) 0.3102 (2) 0.48536 (11) 0.0376 (4)
H3 0.3861 0.2061 0.4869 0.045*
C1 0.3383 (2) 0.4103 (2) 0.40010 (13) 0.0329 (4)
H1 0.3866 0.3649 0.3431 0.039*
C2 0.26762 (18) 0.5778 (2) 0.39701 (12) 0.0271 (3)
C3 0.19067 (19) 0.6488 (2) 0.48205 (12) 0.0296 (4)
C4 0.1921 (2) 0.5357 (2) 0.56891 (13) 0.0366 (4)
H4 0.1422 0.5751 0.6267 0.044*
C5 0.2655 (2) 0.3703 (2) 0.56862 (14) 0.0391 (4)
H5 0.2656 0.2976 0.6262 0.047*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0414 (3) 0.0428 (3) 0.0324 (2) 0.00951 (19) 0.00267 (18) −0.00166 (18)
Cl2 0.0410 (3) 0.0298 (2) 0.0379 (2) 0.00388 (17) 0.01080 (18) 0.00231 (17)
N1 0.0335 (7) 0.0344 (8) 0.0283 (7) 0.0006 (6) 0.0044 (6) −0.0002 (6)
N2 0.0617 (10) 0.0360 (8) 0.0348 (8) 0.0202 (8) 0.0147 (7) 0.0032 (7)
N3 0.0403 (8) 0.0265 (7) 0.0462 (9) 0.0089 (6) 0.0023 (7) 0.0007 (6)
C1 0.0319 (9) 0.0323 (9) 0.0346 (9) 0.0018 (7) 0.0031 (7) −0.0054 (7)
C2 0.0260 (8) 0.0283 (8) 0.0270 (8) −0.0013 (6) 0.0012 (6) −0.0008 (6)
C3 0.0309 (8) 0.0274 (8) 0.0306 (8) 0.0029 (7) 0.0017 (7) −0.0016 (7)
C4 0.0434 (10) 0.0377 (10) 0.0291 (9) 0.0069 (8) 0.0069 (7) 0.0021 (7)
C5 0.0459 (10) 0.0366 (10) 0.0349 (10) 0.0038 (8) 0.0013 (8) 0.0077 (8)

Geometric parameters (Å, °)

N1—C2 1.458 (2) N3—H3 0.8600
N1—H1A 0.8900 C1—C2 1.361 (2)
N1—H1B 0.8900 C1—H1 0.9300
N1—H1C 0.8900 C2—C3 1.416 (2)
N2—C3 1.326 (2) C3—C4 1.417 (2)
N2—H2A 0.8600 C4—C5 1.358 (3)
N2—H2B 0.8600 C4—H4 0.9300
N3—C1 1.346 (2) C5—H5 0.9300
N3—C5 1.353 (2)
C2—N1—H1A 109.5 C2—C1—H1 119.9
C2—N1—H1B 109.5 C1—C2—C3 121.06 (15)
H1A—N1—H1B 109.5 C1—C2—N1 119.26 (14)
C2—N1—H1C 109.5 C3—C2—N1 119.65 (14)
H1A—N1—H1C 109.5 N2—C3—C2 122.95 (15)
H1B—N1—H1C 109.5 N2—C3—C4 120.92 (15)
C3—N2—H2A 120.0 C2—C3—C4 116.12 (15)
C3—N2—H2B 120.0 C5—C4—C3 120.64 (16)
H2A—N2—H2B 120.0 C5—C4—H4 119.7
C1—N3—C5 121.29 (15) C3—C4—H4 119.7
C1—N3—H3 119.4 N3—C5—C4 120.64 (16)
C5—N3—H3 119.4 N3—C5—H5 119.7
N3—C1—C2 120.23 (16) C4—C5—H5 119.7
N3—C1—H1 119.9
C5—N3—C1—C2 1.9 (3) N1—C2—C3—C4 177.72 (15)
N3—C1—C2—C3 −1.2 (2) N2—C3—C4—C5 179.99 (18)
N3—C1—C2—N1 −178.99 (14) C2—C3—C4—C5 0.7 (3)
C1—C2—C3—N2 −179.35 (16) C1—N3—C5—C4 −1.2 (3)
N1—C2—C3—N2 −1.6 (2) C3—C4—C5—N3 −0.1 (3)
C1—C2—C3—C4 −0.1 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···Cl2i 0.89 2.22 3.1142 (15) 178
N1—H1B···Cl2ii 0.89 2.37 3.1754 (16) 151
N1—H1C···Cl1iii 0.89 2.23 3.0790 (16) 160
N2—H2A···Cl1ii 0.86 2.39 3.2188 (17) 163
N2—H2B···Cl1iv 0.86 2.42 3.2672 (17) 168
N3—H3···Cl2 0.86 2.59 3.2499 (16) 135
N3—H3···Cl2v 0.86 2.70 3.3198 (16) 130

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, y+1, z; (iii) −x, y+1/2, −z+1/2; (iv) −x, −y+1, −z+1; (v) −x+1, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SI2142).

References

  1. Iyere, P. A., Boadi, W. Y., Atwood, D. & Parkin, S. (2003). Acta Cryst. B59, 664–669. [DOI] [PubMed]
  2. Bruker (1997). SMART, SAINT and SADABS Bruker AXS Inc., Madison,Wisconsin, USA.
  3. Jones, P. G., Vancea, F. & Herbst-Irmer, R. (2002). Acta Cryst. C58, o665–o668. [DOI] [PubMed]
  4. Kochel, A. (2005). Acta Cryst. E61, o926–o927.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Sørensen, G. O., Mahler, L. & Rastrup-Andersen, N. (1974). J. Mol. Struct.20, 119–126.
  7. Sykora, R. E. & Cioffi, E. A. (2007). Acta Cryst. E63, o3148–o3149.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808041962/si2142sup1.cif

e-65-0o131-sup1.cif (12.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041962/si2142Isup2.hkl

e-65-0o131-Isup2.hkl (73.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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