Abstract
The crystal structure of the title compound, C14H8Cl4N2OS, is composed of discrete molecules with bond lengths and angles quite typical for thiourea compounds of this class. The plane containing the central SONNCC atom set subtends a dihedral angle of 31.47 (3)° with the benzene ring. An intramolecular N—H⋯O hydrogen bond stabilizes the molecular conformation and the molecules form centrosymmetric dimers via intermolecular N—H⋯S hydrogen bonds.
Related literature
For general background, see: Upadlgaya & Srivastava (1982 ▶); Wegner et al. (1986 ▶); Krishnamurthy et al. (1999 ▶). For related structures, see: Khawar Rauf et al. (2006a
▶, 2007 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For bond lengths and angles in N,N′-disubstituted thiourea compounds, see: Arslan et al. (2004 ▶); Khawar Rauf et al. (2006b
▶); Yamin & Yusof, (2003 ▶).
Experimental
Crystal data
C14H8Cl4N2OS
M r = 394.08
Monoclinic,
a = 14.7737 (13) Å
b = 10.3744 (6) Å
c = 10.6935 (11) Å
β = 97.250 (7)°
V = 1625.9 (2) Å3
Z = 4
Mo Kα radiation
μ = 0.86 mm−1
T = 173 (2) K
0.42 × 0.38 × 0.21 mm
Data collection
Refinement
R[F 2 > 2σ(F 2)] = 0.032
wR(F 2) = 0.087
S = 1.05
3724 reflections
208 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.44 e Å−3
Δρmin = −0.36 e Å−3
Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042736/fl2225sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042736/fl2225Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N2—H2⋯O1 | 0.91 (2) | 1.89 (2) | 2.6581 (17) | 141 (2) |
N1—H1⋯S1i | 0.82 (2) | 2.57 (2) | 3.3653 (14) | 163 (2) |
Symmetry code: (i) .
Acknowledgments
MKR is grateful to the HEC-Pakistan for financial support for the PhD program under scholarship No. [ILC–0363104].
supplementary crystallographic information
Comment
Aliphatic and acylthioureas are well known for their fungicidal,antiviral, pesticidal and plant-growth regulating activities (Upadlgaya & Srivastava, 1982; Wegner et al., 1986). Symmetrical and unsymmetrical thioureas have shown antifungal activity against the plant pathogens Pyricularia oryzae and Drechslera oryzae (Krishnamurthy et al., 1999). The background to this study has been set out in our previous work on the structural and biological chemistry of chloro substituted N,N'-disubstituted thioureas (Khawar Rauf et al., 2006a; 2007).The biological studies of these thiourea derivatives are under investigation. Herein, as a continuation of these studies, the structure of the title compound (I) is described (Fig. 1). Bond lengths and angles, can be regarded as typical for N,N'-disubstituted thiourea compounds as found in the Cambridge Structural Database v5.28 (Allen, 2002; Khawar Rauf et al., 2006b; Arslan et al., 2004; Yamin & Yusof, 2003).The molecule exists in the thione form with typical thiourea C—S and C—O bonds, as well as shortened C—N bond lengths. The thiocarbonyl and carbonyl groups are almost coplanar. The molecule features an intramolecular N—H···O hydrogen bond and in the crystal structure, molecules associate via N—H···S intermolecular hydrogen bonds to form centrosymmetric dimers (Table 1; Fig 2).In addition to the intramolecular hydrogen bond, O1 is involved in a short O···Cl contact [O1···Cl2i: 3.0936 (14) Å, symmetry operator i: 1 - x, 1 - y, 1 - z].
Experimental
Freshly prepared 2,6-dichlorobenzoyl isothiocyanate (2.32 g, 10 mmol) was stirred in acetone (40 ml) for 20 minutes. Neat 3,5-dichloroaniline (1.62 g, 10 mmol) was then added and the resulting mixture was stirred for 1 h. The reaction mixture was then poured into acidified (pH 4) water and stirred well. The solid product was separated and washed with deionized water and purified by recrystallization from methanol/ 1,1-dichloromethane (1:10 v/v) to give fine crystals of (I), with an overall yield of 80%.
Refinement
Hydrogen atoms bonded to C were included in calculated positions and refined as riding on their parent C atom with C—H = 0.95 Å Uiso(H) = 1.2Ueq(C). The H atoms bonded to N were freely refined.
Figures
Fig. 1.
Molecular structure of (I) showing atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Fig. 2.
Partial packing diagram of (I) with view onto the ac plane. Hydrogen bonds shown as dashed lines.
Crystal data
C14H8Cl4N2OS | F(000) = 792 |
Mr = 394.08 | Dx = 1.610 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 13230 reflections |
a = 14.7737 (13) Å | θ = 3.8–27.8° |
b = 10.3744 (6) Å | µ = 0.86 mm−1 |
c = 10.6935 (11) Å | T = 173 K |
β = 97.250 (7)° | Plate, colourless |
V = 1625.9 (2) Å3 | 0.42 × 0.38 × 0.21 mm |
Z = 4 |
Data collection
Stoe IPDSII two-circle diffractometer | 3724 independent reflections |
Radiation source: fine-focus sealed tube | 3306 reflections with I > 2σ(I) |
graphite | Rint = 0.046 |
ω scans | θmax = 27.5°, θmin = 3.7° |
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) | h = −19→19 |
Tmin = 0.715, Tmax = 0.841 | k = −13→13 |
12823 measured reflections | l = −10→13 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.032 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0525P)2 + 0.486P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
3724 reflections | Δρmax = 0.44 e Å−3 |
208 parameters | Δρmin = −0.36 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0246 (15) |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.35875 (3) | 0.16745 (4) | 0.09234 (4) | 0.02939 (13) | |
Cl2 | 0.39163 (3) | 0.58457 (4) | 0.39696 (4) | 0.02796 (12) | |
Cl3 | 0.93189 (3) | 0.14605 (4) | 0.52460 (4) | 0.03065 (13) | |
Cl4 | 0.97033 (3) | 0.59117 (4) | 0.27286 (4) | 0.02639 (12) | |
C1 | 0.46669 (10) | 0.35599 (15) | 0.26849 (14) | 0.0171 (3) | |
O1 | 0.50255 (7) | 0.29825 (13) | 0.36158 (11) | 0.0257 (3) | |
N1 | 0.51344 (8) | 0.40910 (14) | 0.17722 (13) | 0.0185 (3) | |
H1 | 0.4844 (15) | 0.443 (2) | 0.115 (2) | 0.028 (5)* | |
S1 | 0.64669 (2) | 0.48065 (5) | 0.04928 (4) | 0.02559 (13) | |
C2 | 0.60770 (10) | 0.41647 (15) | 0.17586 (15) | 0.0168 (3) | |
N2 | 0.65773 (8) | 0.36848 (14) | 0.27949 (13) | 0.0178 (3) | |
H2 | 0.6248 (15) | 0.327 (2) | 0.333 (2) | 0.033 (6)* | |
C11 | 0.36443 (10) | 0.37608 (15) | 0.24447 (14) | 0.0170 (3) | |
C12 | 0.30851 (10) | 0.29239 (16) | 0.16745 (15) | 0.0196 (3) | |
C13 | 0.21408 (11) | 0.30756 (19) | 0.14814 (18) | 0.0265 (4) | |
H13 | 0.1771 | 0.2506 | 0.0941 | 0.032* | |
C14 | 0.17491 (11) | 0.40754 (19) | 0.2093 (2) | 0.0300 (4) | |
H14 | 0.1105 | 0.4177 | 0.1978 | 0.036* | |
C15 | 0.22860 (12) | 0.49305 (18) | 0.28705 (18) | 0.0270 (4) | |
H15 | 0.2014 | 0.5610 | 0.3288 | 0.032* | |
C16 | 0.32308 (10) | 0.47701 (16) | 0.30247 (15) | 0.0195 (3) | |
C21 | 0.75373 (10) | 0.37152 (16) | 0.31296 (14) | 0.0170 (3) | |
C22 | 0.79148 (10) | 0.27196 (16) | 0.39134 (15) | 0.0196 (3) | |
H22 | 0.7539 | 0.2054 | 0.4175 | 0.024* | |
C23 | 0.88510 (10) | 0.27226 (16) | 0.43034 (15) | 0.0208 (3) | |
C24 | 0.94227 (10) | 0.36829 (17) | 0.39447 (15) | 0.0217 (3) | |
H24 | 1.0062 | 0.3666 | 0.4205 | 0.026* | |
C25 | 0.90178 (10) | 0.46720 (16) | 0.31857 (15) | 0.0189 (3) | |
C26 | 0.80870 (10) | 0.47105 (16) | 0.27637 (15) | 0.0184 (3) | |
H26 | 0.7832 | 0.5394 | 0.2242 | 0.022* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0285 (2) | 0.0291 (2) | 0.0314 (2) | −0.00172 (16) | 0.00678 (17) | −0.00990 (17) |
Cl2 | 0.0319 (2) | 0.0247 (2) | 0.0269 (2) | −0.00439 (15) | 0.00228 (17) | −0.00444 (16) |
Cl3 | 0.0275 (2) | 0.0330 (2) | 0.0291 (2) | 0.00629 (16) | −0.00562 (16) | 0.01025 (18) |
Cl4 | 0.01753 (19) | 0.0297 (2) | 0.0324 (2) | −0.00597 (14) | 0.00488 (15) | 0.00171 (16) |
C1 | 0.0145 (6) | 0.0204 (8) | 0.0165 (7) | −0.0021 (5) | 0.0017 (5) | 0.0004 (6) |
O1 | 0.0169 (5) | 0.0394 (7) | 0.0207 (6) | −0.0008 (5) | 0.0015 (4) | 0.0116 (5) |
N1 | 0.0121 (6) | 0.0269 (7) | 0.0160 (6) | 0.0004 (5) | 0.0005 (5) | 0.0066 (5) |
S1 | 0.01402 (18) | 0.0436 (3) | 0.0194 (2) | 0.00106 (16) | 0.00325 (14) | 0.01158 (17) |
C2 | 0.0135 (6) | 0.0201 (8) | 0.0168 (7) | 0.0008 (5) | 0.0018 (5) | 0.0010 (6) |
N2 | 0.0120 (6) | 0.0237 (7) | 0.0177 (6) | −0.0012 (5) | 0.0014 (5) | 0.0037 (5) |
C11 | 0.0138 (6) | 0.0216 (8) | 0.0158 (7) | −0.0009 (5) | 0.0032 (5) | 0.0048 (6) |
C12 | 0.0172 (7) | 0.0226 (8) | 0.0192 (8) | −0.0013 (6) | 0.0035 (5) | 0.0014 (6) |
C13 | 0.0169 (7) | 0.0316 (9) | 0.0298 (9) | −0.0065 (6) | −0.0021 (6) | 0.0016 (7) |
C14 | 0.0135 (7) | 0.0371 (10) | 0.0391 (10) | 0.0025 (7) | 0.0016 (7) | 0.0051 (8) |
C15 | 0.0222 (8) | 0.0267 (9) | 0.0330 (10) | 0.0065 (6) | 0.0065 (7) | 0.0029 (7) |
C16 | 0.0191 (7) | 0.0205 (8) | 0.0186 (7) | −0.0009 (6) | 0.0015 (6) | 0.0028 (6) |
C21 | 0.0126 (6) | 0.0226 (8) | 0.0157 (7) | 0.0014 (5) | 0.0009 (5) | −0.0016 (6) |
C22 | 0.0178 (7) | 0.0232 (8) | 0.0178 (7) | −0.0002 (6) | 0.0016 (5) | 0.0013 (6) |
C23 | 0.0213 (7) | 0.0244 (8) | 0.0157 (7) | 0.0050 (6) | −0.0010 (6) | 0.0017 (6) |
C24 | 0.0142 (6) | 0.0298 (9) | 0.0204 (8) | 0.0020 (6) | −0.0009 (5) | −0.0026 (7) |
C25 | 0.0150 (7) | 0.0242 (8) | 0.0178 (7) | −0.0024 (6) | 0.0027 (5) | −0.0019 (6) |
C26 | 0.0147 (6) | 0.0213 (8) | 0.0188 (7) | 0.0007 (5) | 0.0011 (5) | 0.0005 (6) |
Geometric parameters (Å, °)
Cl1—C12 | 1.7397 (17) | C13—C14 | 1.390 (3) |
Cl2—C16 | 1.7417 (17) | C13—H13 | 0.9500 |
Cl3—C23 | 1.7414 (17) | C14—C15 | 1.393 (3) |
Cl4—C25 | 1.7445 (16) | C14—H14 | 0.9500 |
C1—O1 | 1.224 (2) | C15—C16 | 1.395 (2) |
C1—N1 | 1.3796 (19) | C15—H15 | 0.9500 |
C1—C11 | 1.5146 (19) | C21—C26 | 1.400 (2) |
N1—C2 | 1.3967 (18) | C21—C22 | 1.401 (2) |
N1—H1 | 0.82 (2) | C22—C23 | 1.393 (2) |
S1—C2 | 1.6745 (16) | C22—H22 | 0.9500 |
C2—N2 | 1.347 (2) | C23—C24 | 1.391 (2) |
N2—C21 | 1.4186 (18) | C24—C25 | 1.395 (2) |
N2—H2 | 0.91 (2) | C24—H24 | 0.9500 |
C11—C12 | 1.394 (2) | C25—C26 | 1.393 (2) |
C11—C16 | 1.396 (2) | C26—H26 | 0.9500 |
C12—C13 | 1.393 (2) | ||
O1—C1—N1 | 124.54 (14) | C14—C15—C16 | 118.71 (16) |
O1—C1—C11 | 121.70 (13) | C14—C15—H15 | 120.6 |
N1—C1—C11 | 113.75 (13) | C16—C15—H15 | 120.6 |
C1—N1—C2 | 128.18 (14) | C15—C16—C11 | 121.63 (15) |
C1—N1—H1 | 118.9 (15) | C15—C16—Cl2 | 119.48 (13) |
C2—N1—H1 | 112.9 (15) | C11—C16—Cl2 | 118.89 (12) |
N2—C2—N1 | 114.54 (13) | C26—C21—C22 | 120.66 (14) |
N2—C2—S1 | 127.07 (11) | C26—C21—N2 | 122.87 (14) |
N1—C2—S1 | 118.38 (11) | C22—C21—N2 | 116.38 (14) |
C2—N2—C21 | 128.79 (13) | C23—C22—C21 | 118.86 (15) |
C2—N2—H2 | 114.5 (15) | C23—C22—H22 | 120.6 |
C21—N2—H2 | 116.7 (15) | C21—C22—H22 | 120.6 |
C12—C11—C16 | 118.01 (13) | C24—C23—C22 | 122.24 (15) |
C12—C11—C1 | 121.24 (14) | C24—C23—Cl3 | 119.19 (12) |
C16—C11—C1 | 120.72 (14) | C22—C23—Cl3 | 118.57 (13) |
C13—C12—C11 | 121.66 (15) | C23—C24—C25 | 117.16 (14) |
C13—C12—Cl1 | 119.56 (13) | C23—C24—H24 | 121.4 |
C11—C12—Cl1 | 118.78 (11) | C25—C24—H24 | 121.4 |
C14—C13—C12 | 118.88 (16) | C26—C25—C24 | 122.87 (15) |
C14—C13—H13 | 120.6 | C26—C25—Cl4 | 118.19 (13) |
C12—C13—H13 | 120.6 | C24—C25—Cl4 | 118.93 (12) |
C13—C14—C15 | 121.08 (15) | C25—C26—C21 | 118.19 (14) |
C13—C14—H14 | 119.5 | C25—C26—H26 | 120.9 |
C15—C14—H14 | 119.5 | C21—C26—H26 | 120.9 |
O1—C1—N1—C2 | −4.9 (3) | C14—C15—C16—Cl2 | 178.83 (14) |
C11—C1—N1—C2 | 174.63 (15) | C12—C11—C16—C15 | 1.5 (2) |
C1—N1—C2—N2 | −2.2 (2) | C1—C11—C16—C15 | −176.47 (15) |
C1—N1—C2—S1 | 177.27 (14) | C12—C11—C16—Cl2 | −178.89 (12) |
N1—C2—N2—C21 | −173.75 (15) | C1—C11—C16—Cl2 | 3.2 (2) |
S1—C2—N2—C21 | 6.9 (3) | C2—N2—C21—C26 | 30.3 (3) |
O1—C1—C11—C12 | −95.3 (2) | C2—N2—C21—C22 | −152.93 (16) |
N1—C1—C11—C12 | 85.17 (19) | C26—C21—C22—C23 | −1.2 (2) |
O1—C1—C11—C16 | 82.6 (2) | N2—C21—C22—C23 | −178.08 (14) |
N1—C1—C11—C16 | −96.94 (18) | C21—C22—C23—C24 | 0.2 (2) |
C16—C11—C12—C13 | −0.1 (2) | C21—C22—C23—Cl3 | −178.45 (12) |
C1—C11—C12—C13 | 177.83 (15) | C22—C23—C24—C25 | 1.1 (2) |
C16—C11—C12—Cl1 | 179.03 (12) | Cl3—C23—C24—C25 | 179.77 (12) |
C1—C11—C12—Cl1 | −3.0 (2) | C23—C24—C25—C26 | −1.5 (2) |
C11—C12—C13—C14 | −1.1 (3) | C23—C24—C25—Cl4 | 179.11 (12) |
Cl1—C12—C13—C14 | 179.72 (14) | C24—C25—C26—C21 | 0.5 (2) |
C12—C13—C14—C15 | 1.1 (3) | Cl4—C25—C26—C21 | 179.94 (12) |
C13—C14—C15—C16 | 0.2 (3) | C22—C21—C26—C25 | 0.9 (2) |
C14—C15—C16—C11 | −1.5 (3) | N2—C21—C26—C25 | 177.49 (14) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1 | 0.91 (2) | 1.89 (2) | 2.6581 (17) | 141 (2) |
N1—H1···S1i | 0.82 (2) | 2.57 (2) | 3.3653 (14) | 163 (2) |
Symmetry codes: (i) −x+1, −y+1, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FL2225).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042736/fl2225sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042736/fl2225Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report