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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2008 Dec 24;65(Pt 1):o197. doi: 10.1107/S1600536808043201

(S)-1-[3,5-Bis­(trifluoro­meth­yl)phen­yl]-N-methylethyl­amine–(R)-2-hydroxy­butane­dioic acid (1/1)

Hai-Bin Zhu a,*, Jun-Feng Ji a, Hai Wang a
PMCID: PMC2968104  PMID: 21581651

Abstract

In the title compound, C11H11F6N·C4H6O5, a key inter­mediate in the synthesis of the NK1 receptor antagonist of casopitant, the F atoms of the trifluoro­methyl groups are disordered over two sites with equal occupancies. In the crystal, the components are linked by bifurcated N—H⋯(O,O) hydrogen bonds.

Related literature

The title compound is a key intermediate for the synthesis of casopitant, which is an NK1 receptor antagonist (Humphrey, 2003) for the treatment of chemotheraphy-induced nausea and vomiting (CINV) (Lohr, 2008).graphic file with name e-65-0o197-scheme1.jpg

Experimental

Crystal data

  • C11H11F6N·C4H6O5

  • M r = 405.30

  • Monoclinic, Inline graphic

  • a = 6.6770 (13) Å

  • b = 8.4510 (17) Å

  • c = 16.366 (3) Å

  • β = 100.05 (3)°

  • V = 909.3 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.15 mm−1

  • T = 298 (2) K

  • 0.30 × 0.10 × 0.10 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.957, T max = 0.985

  • 1915 measured reflections

  • 1757 independent reflections

  • 1067 reflections with I > 2σ(I)

  • R int = 0.058

  • 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.063

  • wR(F 2) = 0.154

  • S = 1.00

  • 1757 reflections

  • 220 parameters

  • 2 restraints

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.27 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius,1989); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808043201/at2692sup1.cif

e-65-0o197-sup1.cif (21.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043201/at2692Isup2.hkl

e-65-0o197-Isup2.hkl (86.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N—H0A⋯O4i 0.86 2.37 2.914 (7) 122
N—H0A⋯O3ii 0.86 2.20 2.887 (7) 137

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the China Postdoctoral Research Fund (20070411010) and the Young Teachers’ Starting Fund of Southeast University for support.

supplementary crystallographic information

Comment

The title compound, C11H11F6N.C4H6O5, is a key intermediate for the synthesis of casopitant, which is an NK1 receptor antagonist (Humphrey, 2003) for the treatment of chemotheraphy-induced nausea and vomiting (CINV) (Lohr, 2008).

The molecular structure of the title compound is shown in Fig.1. The F atoms of the trifluoromethyl group are disordered over two sites in a 0.50:0.50 ratio. N—H···O hydrogen bonding interactions occur between (S)-1-(3, 5-bis(trifluoromethyl)-phenyl)ethylamine N-monomethyl and (R)-2-hydroxybutanedioic acid (Table 1).

Experimental

To a solution of 3, 5-bis(trifluoromethyl)-phenyl)ethylamine N-monomethyl (2.71 g, 10 mmol) in EtOAc (25 ml), (R)-2-hydroxybutanedioic acid (1.34,10 mmol) was added portionwise. The suspension was stirred for 2h at 298 K, then for 3 h at 273 K. The suspension was filtered and the cake was washed with EtOAc (20 ml). The solid was dried under vacucum obtaining the crude title compound (1.48 g). Single crystal of the title compound suitable for X-ray diffraction was obtained by slow evaporation of the EtOAc solution of the title compound.

Refinement

All H atoms were positoned geometrically and allowed to ride on their parent atoms, with C—H = 0.93Å for aromatic H atoms, 0.96Å for methyl H atoms, 0.97Å for methylene H atoms, 0.98Å for methine H atoms and O—H = 0.82 Å, N—H = 0.86 Å, respectively. [Uiso (H) = 1.2Ueq(C) for aromatic, methylene and methine; Uiso(H) = 1.5 Ueq(C) for methyl, Uiso(H) = 1.2Ueq(N); Uiso(H) = 1.5 Ueq(O).]

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, drawn with 30% probability ellipsoids.

Crystal data

C11H11F6N·C4H6O5 F(000) = 416
Mr = 405.30 Dx = 1.480 Mg m3
Monoclinic, P21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2yb Cell parameters from 25 reflections
a = 6.6770 (13) Å θ = 9–12°
b = 8.4510 (17) Å µ = 0.15 mm1
c = 16.366 (3) Å T = 298 K
β = 100.05 (3)° Needle, colourless
V = 909.3 (3) Å3 0.30 × 0.10 × 0.10 mm
Z = 2

Data collection

Enraf–Nonius CAD-4 diffractometer 1067 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.058
graphite θmax = 25.3°, θmin = 1.3°
ω/2θ scans h = 0→7
Absorption correction: ψ scan (North et al., 1968) k = 0→10
Tmin = 0.957, Tmax = 0.985 l = −19→19
1915 measured reflections 3 standard reflections every 200 reflections
1757 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.060P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
1757 reflections (Δ/σ)max < 0.001
220 parameters Δρmax = 0.18 e Å3
2 restraints Δρmin = −0.27 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
F1 0.9058 (17) 0.4852 (16) 0.9973 (8) 0.112 0.50
F3 0.9270 (13) 0.6270 (13) 0.8772 (6) 0.083 0.50
F2 1.0892 (15) 0.4013 (14) 0.9084 (6) 0.101 0.50
F1' 0.7985 (16) 0.6070 (16) 0.9651 (7) 0.111 0.50
F2' 1.000 (2) 0.4376 (16) 0.9758 (7) 0.111 0.50
F3' 0.9991 (17) 0.5461 (16) 0.8769 (7) 0.115 0.50
F4 0.5055 (13) −0.0158 (14) 0.9651 (7) 0.085 0.50
F5 0.3781 (15) −0.0926 (12) 0.8429 (6) 0.080 0.50
F6 0.6975 (13) −0.0918 (12) 0.8664 (6) 0.078 0.50
F4' 0.5831 (15) −0.0443 (15) 0.9665 (8) 0.097 0.50
F5' 0.3083 (15) −0.0556 (14) 0.8707 (6) 0.095 0.50
F6' 0.6174 (16) −0.1374 (14) 0.8609 (7) 0.093 0.50
N 0.3387 (7) 0.3503 (6) 0.6045 (3) 0.0464 (12)
H0A 0.2534 0.2888 0.5744 0.056*
C1 0.8859 (12) 0.4933 (11) 0.9164 (5) 0.081
C2 0.5244 (14) −0.0104 (14) 0.8816 (5) 0.094 (3)
C3 0.5326 (11) 0.1454 (10) 0.8548 (4) 0.063 (2)
C4 0.4157 (10) 0.2037 (8) 0.7869 (4) 0.0543 (17)
H4A 0.3136 0.1408 0.7574 0.065*
C5 0.4445 (9) 0.3611 (9) 0.7587 (4) 0.0527 (16)
C6 0.5931 (11) 0.4465 (10) 0.8000 (4) 0.072 (2)
H6A 0.6137 0.5488 0.7821 0.087*
C7 0.7249 (13) 0.3856 (12) 0.8723 (5) 0.080 (2)
C8 0.6962 (12) 0.2426 (12) 0.8978 (5) 0.079 (3)
H8A 0.7817 0.2026 0.9441 0.095*
C9 0.3017 (8) 0.4239 (8) 0.6855 (3) 0.0482 (15)
H9A 0.3274 0.5377 0.6823 0.058*
C10 0.0783 (9) 0.4033 (9) 0.6903 (4) 0.0646 (19)
H10A 0.0507 0.4508 0.7405 0.097*
H10B 0.0461 0.2926 0.6902 0.097*
H10C −0.0033 0.4535 0.6433 0.097*
C11 0.5373 (9) 0.3961 (9) 0.5832 (4) 0.0606 (18)
H11A 0.5542 0.3455 0.5323 0.091*
H11B 0.6447 0.3636 0.6269 0.091*
H11C 0.5419 0.5088 0.5766 0.091*
O1 0.6777 (8) 0.0742 (7) 0.6474 (4) 0.0869 (18)
O2 0.5220 (7) −0.1471 (5) 0.6689 (3) 0.0652 (13)
H2A 0.4226 −0.0912 0.6526 0.098*
O3 0.8263 (6) −0.2740 (5) 0.5576 (3) 0.0579 (12)
H3A 0.8825 −0.3437 0.5351 0.087*
O4 1.1965 (6) 0.0264 (5) 0.6157 (3) 0.0540 (11)
O5 0.9516 (7) 0.0076 (6) 0.5086 (3) 0.0678 (15)
H5A 1.0184 0.0743 0.4888 0.102*
C12 0.6858 (11) −0.0671 (9) 0.6676 (4) 0.0551 (17)
C13 0.8797 (9) −0.1508 (8) 0.6891 (4) 0.0522 (15)
H13A 0.8587 −0.2481 0.7179 0.063*
H13B 0.9744 −0.0857 0.7265 0.063*
C14 0.9715 (8) −0.1898 (7) 0.6122 (3) 0.0428 (14)
H14A 1.0894 −0.2588 0.6292 0.051*
C15 1.0461 (9) −0.0360 (7) 0.5766 (4) 0.0464 (15)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.112 0.112 0.112 0.000 0.020 0.000
F3 0.083 0.083 0.083 0.000 0.015 0.000
F2 0.101 0.101 0.101 0.000 0.018 0.000
F1' 0.111 0.111 0.111 0.000 0.019 0.000
F2' 0.111 0.111 0.111 0.000 0.019 0.000
F3' 0.115 0.115 0.115 0.000 0.020 0.000
F4 0.085 0.085 0.085 0.000 0.015 0.000
F5 0.080 0.080 0.080 0.000 0.014 0.000
F6 0.078 0.078 0.078 0.000 0.014 0.000
F4' 0.097 0.097 0.097 0.000 0.017 0.000
F5' 0.095 0.095 0.095 0.000 0.017 0.000
F6' 0.093 0.093 0.093 0.000 0.016 0.000
N 0.050 (3) 0.044 (3) 0.047 (3) −0.015 (3) 0.010 (2) −0.004 (3)
C1 0.072 0.100 0.067 −0.033 −0.003 0.033
C2 0.097 (7) 0.114 (8) 0.069 (6) 0.014 (7) 0.012 (5) 0.000 (6)
C3 0.063 (4) 0.065 (5) 0.059 (4) 0.016 (4) 0.005 (4) 0.000 (4)
C4 0.055 (4) 0.058 (4) 0.048 (3) −0.002 (4) 0.002 (3) 0.002 (3)
C5 0.053 (4) 0.065 (5) 0.042 (3) −0.004 (4) 0.013 (3) −0.002 (3)
C6 0.075 (5) 0.084 (6) 0.055 (4) −0.014 (5) 0.003 (4) −0.012 (4)
C7 0.068 (5) 0.076 (6) 0.089 (6) −0.003 (5) −0.006 (4) 0.001 (5)
C8 0.068 (5) 0.102 (7) 0.061 (5) 0.000 (5) −0.007 (4) −0.014 (5)
C9 0.053 (3) 0.045 (3) 0.045 (3) 0.009 (3) 0.003 (3) 0.007 (3)
C10 0.054 (4) 0.069 (5) 0.073 (4) 0.005 (4) 0.017 (3) 0.014 (4)
C11 0.047 (3) 0.062 (4) 0.072 (4) −0.015 (3) 0.010 (3) 0.003 (4)
O1 0.081 (4) 0.067 (4) 0.120 (5) 0.011 (3) 0.037 (3) 0.010 (4)
O2 0.068 (3) 0.053 (3) 0.074 (3) −0.002 (3) 0.009 (2) 0.002 (3)
O3 0.059 (3) 0.043 (2) 0.074 (3) −0.012 (2) 0.018 (2) −0.011 (2)
O4 0.046 (2) 0.053 (3) 0.062 (3) −0.011 (2) 0.009 (2) −0.002 (2)
O5 0.082 (3) 0.066 (3) 0.052 (2) −0.022 (3) 0.003 (2) 0.015 (3)
C12 0.062 (4) 0.061 (4) 0.046 (4) −0.003 (4) 0.022 (3) −0.005 (3)
C13 0.060 (4) 0.051 (4) 0.048 (3) 0.005 (4) 0.016 (3) 0.003 (3)
C14 0.041 (3) 0.048 (4) 0.042 (3) 0.007 (3) 0.014 (3) 0.006 (3)
C15 0.046 (3) 0.036 (3) 0.061 (4) 0.005 (3) 0.020 (3) −0.004 (3)

Geometric parameters (Å, °)

F1—C1 1.309 (14) C7—C8 1.304 (13)
F3—C1 1.352 (13) C8—H8A 0.9300
F2—C1 1.589 (14) C9—C10 1.517 (8)
F1'—C1 1.436 (13) C9—H9A 0.9800
F2'—C1 1.219 (13) C10—H10A 0.9600
F3'—C1 1.167 (12) C10—H10B 0.9600
F4—C2 1.395 (13) C10—H10C 0.9600
F5—C2 1.274 (12) C11—H11A 0.9600
F6—C2 1.404 (11) C11—H11B 0.9600
F4'—C2 1.405 (14) C11—H11C 0.9600
F5'—C2 1.474 (13) O1—C12 1.237 (9)
F6'—C2 1.313 (15) O2—C12 1.290 (8)
N—C11 1.480 (7) O2—H2A 0.8200
N—C9 1.523 (7) O3—C14 1.394 (7)
N—H0A 0.8600 O3—H3A 0.8200
C1—C7 1.495 (11) O4—C15 1.213 (7)
C2—C3 1.392 (13) O5—C15 1.236 (7)
C3—C4 1.336 (9) O5—H5A 0.8200
C3—C8 1.447 (11) C12—C13 1.463 (9)
C4—C5 1.432 (10) C13—C14 1.530 (8)
C4—H4A 0.9300 C13—H13A 0.9700
C5—C6 1.315 (9) C13—H13B 0.9700
C5—C9 1.492 (8) C14—C15 1.543 (8)
C6—C7 1.441 (10) C14—H14A 0.9800
C6—H6A 0.9300
C11—N—C9 112.7 (5) C5—C6—C7 121.6 (8)
C11—N—H0A 123.6 C5—C6—H6A 119.2
C9—N—H0A 123.6 C7—C6—H6A 119.2
F3'—C1—F2' 102.5 (11) C8—C7—C6 119.4 (8)
F3'—C1—F1 128.3 (11) C8—C7—C1 122.9 (8)
F2'—C1—F3 123.5 (10) C6—C7—C1 117.6 (8)
F1—C1—F3 122.1 (10) C7—C8—C3 120.8 (8)
F3'—C1—F1' 114.7 (11) C7—C8—H8A 119.6
F2'—C1—F1' 94.2 (9) C3—C8—H8A 119.6
F1—C1—F1' 56.8 (8) C5—C9—C10 114.4 (5)
F3—C1—F1' 80.8 (8) C5—C9—N 112.1 (5)
F3'—C1—C7 116.5 (10) C10—C9—N 108.0 (5)
F2'—C1—C7 116.5 (9) C5—C9—H9A 107.3
F1—C1—C7 113.2 (9) C10—C9—H9A 107.3
F3—C1—C7 117.9 (7) N—C9—H9A 107.3
F1'—C1—C7 110.3 (8) C9—C10—H10A 109.5
F3'—C1—F2 59.7 (8) C9—C10—H10B 109.5
F2'—C1—F2 56.9 (8) H10A—C10—H10B 109.5
F1—C1—F2 96.9 (8) C9—C10—H10C 109.5
F3—C1—F2 97.0 (8) H10A—C10—H10C 109.5
F1'—C1—F2 144.0 (8) H10B—C10—H10C 109.5
C7—C1—F2 102.4 (8) N—C11—H11A 109.5
F5—C2—F6' 77.4 (9) N—C11—H11B 109.5
F5—C2—C3 115.3 (9) H11A—C11—H11B 109.5
F6'—C2—C3 130.1 (9) N—C11—H11C 109.5
F5—C2—F4 106.1 (10) H11A—C11—H11C 109.5
F6'—C2—F4 110.7 (10) H11B—C11—H11C 109.5
C3—C2—F4 110.8 (10) C12—O2—H2A 109.5
F5—C2—F6 103.2 (10) C14—O3—H3A 109.5
C3—C2—F6 109.2 (9) C15—O5—H5A 109.5
F4—C2—F6 112.1 (8) O1—C12—O2 120.8 (7)
F5—C2—F4' 116.0 (10) O1—C12—C13 121.8 (7)
F6'—C2—F4' 91.5 (9) O2—C12—C13 117.4 (7)
C3—C2—F4' 119.0 (10) C12—C13—C14 111.8 (5)
F6—C2—F4' 88.8 (8) C12—C13—H13A 109.3
F6'—C2—F5' 104.7 (10) C14—C13—H13A 109.3
C3—C2—F5' 107.4 (9) C12—C13—H13B 109.3
F4—C2—F5' 81.7 (8) C14—C13—H13B 109.3
F6—C2—F5' 132.1 (11) H13A—C13—H13B 107.9
F4'—C2—F5' 99.5 (9) O3—C14—C13 107.7 (4)
C4—C3—C2 124.2 (8) O3—C14—C15 115.0 (5)
C4—C3—C8 118.5 (8) C13—C14—C15 109.4 (5)
C2—C3—C8 116.8 (8) O3—C14—H14A 108.2
C3—C4—C5 121.2 (7) C13—C14—H14A 108.2
C3—C4—H4A 119.4 C15—C14—H14A 108.2
C5—C4—H4A 119.4 O4—C15—O5 126.3 (6)
C6—C5—C4 118.4 (7) O4—C15—C14 117.3 (5)
C6—C5—C9 122.5 (7) O5—C15—C14 116.3 (5)
C4—C5—C9 119.1 (6)
F5—C2—C3—C4 −8.6 (14) F2—C1—C7—C8 63.3 (12)
F6'—C2—C3—C4 86.2 (14) F3'—C1—C7—C6 −56.5 (14)
F4—C2—C3—C4 −129.1 (9) F2'—C1—C7—C6 −177.7 (11)
F6—C2—C3—C4 107.0 (10) F1—C1—C7—C6 138.1 (10)
F4'—C2—C3—C4 −153.3 (8) F3—C1—C7—C6 −13.7 (14)
F5'—C2—C3—C4 −41.5 (11) F1'—C1—C7—C6 76.5 (10)
F5—C2—C3—C8 179.6 (8) F2—C1—C7—C6 −118.7 (8)
F6'—C2—C3—C8 −85.6 (13) C6—C7—C8—C3 −0.6 (14)
F4—C2—C3—C8 59.1 (11) C1—C7—C8—C3 177.4 (8)
F6—C2—C3—C8 −64.8 (10) C4—C3—C8—C7 2.0 (13)
F4'—C2—C3—C8 34.8 (13) C2—C3—C8—C7 174.3 (9)
F5'—C2—C3—C8 146.6 (8) C6—C5—C9—C10 −128.2 (7)
C2—C3—C4—C5 −174.3 (8) C4—C5—C9—C10 49.9 (8)
C8—C3—C4—C5 −2.6 (11) C6—C5—C9—N 108.5 (7)
C3—C4—C5—C6 1.8 (11) C4—C5—C9—N −73.5 (7)
C3—C4—C5—C9 −176.3 (6) C11—N—C9—C5 −66.8 (7)
C4—C5—C6—C7 −0.3 (11) C11—N—C9—C10 166.3 (5)
C9—C5—C6—C7 177.8 (7) O1—C12—C13—C14 −75.2 (9)
C5—C6—C7—C8 −0.3 (13) O2—C12—C13—C14 103.5 (7)
C5—C6—C7—C1 −178.4 (8) C12—C13—C14—O3 −55.0 (7)
F3'—C1—C7—C8 125.5 (13) C12—C13—C14—C15 70.6 (7)
F2'—C1—C7—C8 4.3 (17) O3—C14—C15—O4 −167.3 (5)
F1—C1—C7—C8 −39.9 (15) C13—C14—C15—O4 71.4 (6)
F3—C1—C7—C8 168.3 (10) O3—C14—C15—O5 9.4 (7)
F1'—C1—C7—C8 −101.5 (12) C13—C14—C15—O5 −111.9 (6)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N—H0A···O4i 0.86 2.37 2.914 (7) 122
N—H0A···O3ii 0.86 2.20 2.887 (7) 137

Symmetry codes: (i) x−1, y, z; (ii) −x+1, y+1/2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: AT2692).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808043201/at2692sup1.cif

e-65-0o197-sup1.cif (21.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043201/at2692Isup2.hkl

e-65-0o197-Isup2.hkl (86.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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