Abstract
The title compound, C14H9Cl3N2OS, has bond lengths and angles which are quite typical for thiourea compounds of this class. The molecule exists in the solid state in its thione form with typical thiourea C=S and C=O bond lengths, as well as shortened C—N bonds. An intramolecular N—H⋯O hydrogen bond stabilizes the molecular conformation. Intermolecular N—H⋯S hydrogen bonds link the molecules to form centrosymmetric dimers.
Related literature
For thiourea derivatives with biological activities, see: Baily et al. (1996 ▶); Koch (2001 ▶); Maryanoff et al. (1986 ▶); Namgun et al. (2001 ▶); Patil & Chedekel (1984 ▶); Upadlgaya & Srivastava (1982 ▶); Wegner et al. (1986 ▶); Krishnamurthy et al. (1999 ▶). For related structures, see: Khawar Rauf et al. (2006a
▶,b
▶,c
▶, 2007 ▶). For standard bond-length data, see: Allen (2002 ▶).
Experimental
Crystal data
C14H9Cl3N2OS
M r = 359.65
Triclinic,
a = 5.9674 (6) Å
b = 9.6577 (9) Å
c = 13.9585 (13) Å
α = 92.919 (6)°
β = 98.005 (7)°
γ = 101.330 (8)°
V = 778.54 (13) Å3
Z = 2
Mo Kα radiation
μ = 0.72 mm−1
T = 173 (2) K
0.37 × 0.34 × 0.33 mm
Data collection
Refinement
R[F 2 > 2σ(F 2)] = 0.029
wR(F 2) = 0.078
S = 1.02
3418 reflections
199 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.35 e Å−3
Δρmin = −0.30 e Å−3
Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680900004X/rk2121sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680900004X/rk2121Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N1—H1⋯S1i | 0.84 (2) | 2.71 (2) | 3.4273 (12) | 144.3 (16) |
N2—H2⋯O1 | 0.81 (2) | 2.06 (2) | 2.7098 (16) | 136.4 (19) |
Symmetry code: (i) .
Acknowledgments
MKR is grateful to the HEC, Pakistan, for financial support for a PhD programme under scholarship No. ILC-0363104.
supplementary crystallographic information
Comment
N-substituted and N,N'-disubstituted thiourea derivatives are very useful starting materials for the synthesis of a wide range of aliphatic macromolecular and heterocyclic compounds. Benzothiazoles have been prepared from arylthioureas in the presence of bromine (Patil & Chedekel, 1984) and condensation of thiourea with α-halocarbonyl compounds form 2-aminothiazoles (Baily et al., 1996). The 2-methyl-aminothiazolines have been synthesized by cyclization of N-(2-hydroxyethyl)-N'-methylthioureas (Namgun et al., 2001). Thioureas are efficient guanylating agents (Maryanoff et al., 1986). The N,N-dialkyl-N-aroylthioureas have been effectively used for the extraction of Ni, Pd and Pt metals (Koch, 2001). Aliphatic and acylthioureas are well known for their fungicidal, antiviral, pesticidal and plant-growth regulating activities (Upadlgaya & Srivastava, 1982; Wegner et al., 1986). Symmetrical and unsymmetrical thioureas have shown antifungal activity against the plant pathogens Pyricularia oryzae and Drechslera oryzae (Krishnamurthy et al., 1999). We are interested in the synthesis of these thioureas as intermediates in the synthesis of novel guanidines and heterocyclic compounds for the systematic study of bioactivity and complexation behaviour and we present here the crystal structure of the title compound. The title compound (Fig. 1) shows the typical thiourea C═S and C═O double bonds as well as shortened C—N bond lengths. The thiocarbonyl and carbonyl groups are almost coplanar, as reflected by the torsion angles C2—N1—C1—O1 = 9.0 (2)° and N2—C2—N1—C1 = 5.5 (2)°. This is associated with the expected typical thiourea intramolecular N—H···O hydrogen bond (Table). The dihedral angle formed by the two benzene ring planes is 9.35 (9)°. Bond lengths and angles can be regarded as typical for N,N'-disubstituted thiourea compounds as found in the Cambridge Structural Database ver. 5.28 (Allen, 2002) and Khawar Rauf et al., 2006a,b,c, 2007. Intermolecular N—H···S hydrogen bonds (Table, Fig. 2), link the molecules to dimers. The Cl atoms are not involved in any type of hydrogen bonds.
Experimental
Freshly prepared 2,4-dichlorobenzoyl isothiocyanate (2.3 g, 10 mmol) was stirred in acetone (40 ml) for 20 min. Neat 4-chloroaniline (1.3 g, 10 mmol) was then added and the resulting mixture was stirred for 1.5 h. The reaction mixture was then poured into acidified (pH 4) water and stirred well. The solid product was separated and washed with deionized water and purified by recrystallization from methanol–1,1-dichloromethane (1:10 v/v) to give fine crystals of title compound, with an overall yield of 90%. Full spectroscopic and physical characterization will be reported elsewhere.
Refinement
H atoms were located in a difference map, but those bonded to C were refined with fixed individual displacement parameters Uiso(H) = 1.2Ueq(C) using a riding model with C—H = 0.95 Å. The H atoms bonded to N were refined freely.
Figures
Fig. 1.
Molecular structure of the title compound showing atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are drawn as a small spheres of arbitrary radius.
Fig. 2.
Packing diagram of the title compound with view onto the bc plane. Hydrogen bonds are shown as dashed lines.
Crystal data
C14H9Cl3N2OS | Z = 2 |
Mr = 359.65 | F(000) = 364 |
Triclinic, P1 | Dx = 1.534 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 5.9674 (6) Å | Cell parameters from 8758 reflections |
b = 9.6577 (9) Å | θ = 3.7–27.1° |
c = 13.9585 (13) Å | µ = 0.72 mm−1 |
α = 92.919 (6)° | T = 173 K |
β = 98.005 (7)° | Block, colourless |
γ = 101.330 (8)° | 0.37 × 0.34 × 0.33 mm |
V = 778.54 (13) Å3 |
Data collection
Stoe IPDS II two-circle diffractometer | 3418 independent reflections |
Radiation source: fine-focus sealed tube | 3154 reflections with I > 2σ(I) |
graphite | Rint = 0.037 |
ω scans | θmax = 27.1°, θmin = 3.5° |
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) | h = −7→7 |
Tmin = 0.776, Tmax = 0.797 | k = −12→12 |
10758 measured reflections | l = −16→17 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.078 | w = 1/[σ2(Fo2) + (0.0411P)2 + 0.3093P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.001 |
3418 reflections | Δρmax = 0.35 e Å−3 |
199 parameters | Δρmin = −0.30 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.032 (3) |
Special details
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F and R–factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S1 | 0.67492 (6) | 0.98619 (3) | 0.38939 (2) | 0.02427 (11) | |
Cl1 | 1.21954 (7) | 0.58845 (5) | 0.63698 (3) | 0.03934 (12) | |
Cl2 | 1.28238 (9) | 0.84274 (6) | 0.99473 (3) | 0.05304 (15) | |
Cl3 | −0.25621 (7) | 0.63336 (6) | 0.06553 (3) | 0.04618 (14) | |
O1 | 0.69489 (18) | 0.58953 (10) | 0.55419 (8) | 0.0271 (2) | |
N1 | 0.7744 (2) | 0.82647 (12) | 0.53113 (8) | 0.0217 (2) | |
H1 | 0.870 (3) | 0.901 (2) | 0.5518 (14) | 0.031 (5)* | |
N2 | 0.48353 (19) | 0.71427 (12) | 0.40789 (8) | 0.0214 (2) | |
H2 | 0.488 (3) | 0.644 (2) | 0.4369 (15) | 0.036 (5)* | |
C1 | 0.7879 (2) | 0.71114 (13) | 0.58426 (10) | 0.0198 (2) | |
C2 | 0.6359 (2) | 0.83297 (13) | 0.44250 (9) | 0.0194 (2) | |
C11 | 0.9208 (2) | 0.74977 (13) | 0.68462 (10) | 0.0211 (3) | |
C12 | 1.1140 (2) | 0.69336 (14) | 0.71709 (11) | 0.0253 (3) | |
C13 | 1.2283 (3) | 0.72390 (16) | 0.81191 (11) | 0.0319 (3) | |
H13 | 1.3614 | 0.6870 | 0.8331 | 0.038* | |
C14 | 1.1437 (3) | 0.80951 (17) | 0.87478 (11) | 0.0332 (3) | |
C15 | 0.9539 (3) | 0.86812 (18) | 0.84524 (12) | 0.0357 (3) | |
H15 | 0.8995 | 0.9269 | 0.8895 | 0.043* | |
C16 | 0.8441 (3) | 0.83931 (16) | 0.74932 (11) | 0.0294 (3) | |
H16 | 0.7162 | 0.8808 | 0.7277 | 0.035* | |
C21 | 0.3125 (2) | 0.70259 (13) | 0.32315 (9) | 0.0202 (3) | |
C22 | 0.1340 (2) | 0.77684 (15) | 0.32197 (11) | 0.0266 (3) | |
H22 | 0.1311 | 0.8405 | 0.3757 | 0.032* | |
C23 | −0.0402 (2) | 0.75754 (16) | 0.24188 (11) | 0.0290 (3) | |
H23 | −0.1616 | 0.8083 | 0.2401 | 0.035* | |
C24 | −0.0327 (2) | 0.66248 (16) | 0.16468 (10) | 0.0274 (3) | |
C25 | 0.1444 (3) | 0.58874 (16) | 0.16452 (10) | 0.0288 (3) | |
H25 | 0.1471 | 0.5253 | 0.1106 | 0.035* | |
C26 | 0.3185 (2) | 0.60921 (14) | 0.24475 (10) | 0.0246 (3) | |
H26 | 0.4411 | 0.5594 | 0.2459 | 0.030* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.02479 (18) | 0.01930 (16) | 0.02596 (18) | −0.00011 (12) | −0.00124 (13) | 0.00791 (12) |
Cl1 | 0.0333 (2) | 0.0460 (2) | 0.0449 (2) | 0.02251 (17) | 0.00655 (16) | 0.00362 (17) |
Cl2 | 0.0557 (3) | 0.0652 (3) | 0.0274 (2) | −0.0014 (2) | −0.01264 (18) | 0.00720 (19) |
Cl3 | 0.0303 (2) | 0.0761 (3) | 0.0284 (2) | 0.01286 (19) | −0.00926 (15) | −0.00085 (19) |
O1 | 0.0275 (5) | 0.0176 (4) | 0.0327 (5) | 0.0013 (4) | −0.0038 (4) | 0.0041 (4) |
N1 | 0.0221 (5) | 0.0163 (5) | 0.0228 (6) | −0.0012 (4) | −0.0029 (4) | 0.0031 (4) |
N2 | 0.0222 (5) | 0.0169 (5) | 0.0227 (5) | 0.0015 (4) | −0.0022 (4) | 0.0040 (4) |
C1 | 0.0160 (6) | 0.0204 (6) | 0.0232 (6) | 0.0038 (4) | 0.0026 (5) | 0.0045 (5) |
C2 | 0.0186 (6) | 0.0194 (6) | 0.0199 (6) | 0.0037 (4) | 0.0015 (5) | 0.0021 (4) |
C11 | 0.0196 (6) | 0.0194 (6) | 0.0231 (6) | 0.0015 (4) | 0.0014 (5) | 0.0058 (5) |
C12 | 0.0209 (6) | 0.0251 (6) | 0.0299 (7) | 0.0046 (5) | 0.0026 (5) | 0.0080 (5) |
C13 | 0.0233 (7) | 0.0353 (8) | 0.0351 (8) | 0.0031 (6) | −0.0031 (6) | 0.0145 (6) |
C14 | 0.0335 (8) | 0.0365 (8) | 0.0232 (7) | −0.0036 (6) | −0.0039 (6) | 0.0085 (6) |
C15 | 0.0420 (9) | 0.0382 (8) | 0.0263 (7) | 0.0090 (7) | 0.0032 (6) | 0.0003 (6) |
C16 | 0.0299 (7) | 0.0315 (7) | 0.0277 (7) | 0.0105 (6) | 0.0013 (6) | 0.0028 (6) |
C21 | 0.0189 (6) | 0.0185 (6) | 0.0209 (6) | 0.0002 (4) | −0.0002 (5) | 0.0045 (5) |
C22 | 0.0251 (7) | 0.0249 (6) | 0.0289 (7) | 0.0066 (5) | 0.0006 (5) | −0.0020 (5) |
C23 | 0.0217 (6) | 0.0325 (7) | 0.0330 (7) | 0.0092 (5) | −0.0001 (6) | 0.0028 (6) |
C24 | 0.0216 (6) | 0.0364 (7) | 0.0217 (6) | 0.0025 (5) | −0.0014 (5) | 0.0051 (5) |
C25 | 0.0298 (7) | 0.0346 (7) | 0.0211 (6) | 0.0066 (6) | 0.0022 (5) | −0.0014 (5) |
C26 | 0.0232 (6) | 0.0265 (6) | 0.0246 (7) | 0.0073 (5) | 0.0020 (5) | 0.0029 (5) |
Geometric parameters (Å, °)
S1—C2 | 1.6786 (13) | C13—H13 | 0.9500 |
Cl1—C12 | 1.7336 (15) | C14—C15 | 1.385 (2) |
Cl2—C14 | 1.7454 (16) | C15—C16 | 1.395 (2) |
Cl3—C24 | 1.7529 (14) | C15—H15 | 0.9500 |
O1—C1 | 1.2217 (16) | C16—H16 | 0.9500 |
N1—C1 | 1.3784 (16) | C21—C26 | 1.3912 (19) |
N1—C2 | 1.4003 (17) | C21—C22 | 1.3947 (19) |
N1—H1 | 0.84 (2) | C22—C23 | 1.394 (2) |
N2—C2 | 1.3365 (17) | C22—H22 | 0.9500 |
N2—C21 | 1.4348 (16) | C23—C24 | 1.391 (2) |
N2—H2 | 0.81 (2) | C23—H23 | 0.9500 |
C1—C11 | 1.5004 (18) | C24—C25 | 1.385 (2) |
C11—C12 | 1.3993 (19) | C25—C26 | 1.395 (2) |
C11—C16 | 1.401 (2) | C25—H25 | 0.9500 |
C12—C13 | 1.391 (2) | C26—H26 | 0.9500 |
C13—C14 | 1.387 (2) | ||
C1—N1—C2 | 128.79 (11) | C14—C15—C16 | 118.83 (15) |
C1—N1—H1 | 115.9 (13) | C14—C15—H15 | 120.6 |
C2—N1—H1 | 115.1 (13) | C16—C15—H15 | 120.6 |
C2—N2—C21 | 124.59 (11) | C15—C16—C11 | 120.59 (14) |
C2—N2—H2 | 117.6 (14) | C15—C16—H16 | 119.7 |
C21—N2—H2 | 117.8 (14) | C11—C16—H16 | 119.7 |
O1—C1—N1 | 123.60 (12) | C26—C21—C22 | 120.47 (12) |
O1—C1—C11 | 122.92 (12) | C26—C21—N2 | 119.04 (12) |
N1—C1—C11 | 113.44 (11) | C22—C21—N2 | 120.35 (12) |
N2—C2—N1 | 115.97 (11) | C23—C22—C21 | 119.97 (13) |
N2—C2—S1 | 125.98 (10) | C23—C22—H22 | 120.0 |
N1—C2—S1 | 118.06 (9) | C21—C22—H22 | 120.0 |
C12—C11—C16 | 118.82 (13) | C24—C23—C22 | 118.73 (13) |
C12—C11—C1 | 121.64 (12) | C24—C23—H23 | 120.6 |
C16—C11—C1 | 119.48 (12) | C22—C23—H23 | 120.6 |
C13—C12—C11 | 121.15 (14) | C25—C24—C23 | 121.94 (13) |
C13—C12—Cl1 | 119.15 (11) | C25—C24—Cl3 | 119.11 (11) |
C11—C12—Cl1 | 119.66 (11) | C23—C24—Cl3 | 118.95 (11) |
C14—C13—C12 | 118.49 (14) | C24—C25—C26 | 118.95 (13) |
C14—C13—H13 | 120.8 | C24—C25—H25 | 120.5 |
C12—C13—H13 | 120.8 | C26—C25—H25 | 120.5 |
C15—C14—C13 | 122.07 (14) | C21—C26—C25 | 119.93 (13) |
C15—C14—Cl2 | 119.67 (13) | C21—C26—H26 | 120.0 |
C13—C14—Cl2 | 118.26 (12) | C25—C26—H26 | 120.0 |
C2—N1—C1—O1 | 9.0 (2) | C13—C14—C15—C16 | 0.3 (2) |
C2—N1—C1—C11 | −168.72 (12) | Cl2—C14—C15—C16 | −179.43 (12) |
C21—N2—C2—N1 | 174.17 (12) | C14—C15—C16—C11 | 1.6 (2) |
C21—N2—C2—S1 | −6.02 (19) | C12—C11—C16—C15 | −2.0 (2) |
C1—N1—C2—N2 | 5.5 (2) | C1—C11—C16—C15 | 175.05 (13) |
C1—N1—C2—S1 | −174.29 (11) | C2—N2—C21—C26 | 118.68 (15) |
O1—C1—C11—C12 | 59.43 (18) | C2—N2—C21—C22 | −65.50 (18) |
N1—C1—C11—C12 | −122.82 (13) | C26—C21—C22—C23 | 0.1 (2) |
O1—C1—C11—C16 | −117.54 (15) | N2—C21—C22—C23 | −175.68 (13) |
N1—C1—C11—C16 | 60.22 (16) | C21—C22—C23—C24 | 0.7 (2) |
C16—C11—C12—C13 | 0.5 (2) | C22—C23—C24—C25 | −1.1 (2) |
C1—C11—C12—C13 | −176.50 (12) | C22—C23—C24—Cl3 | 177.91 (11) |
C16—C11—C12—Cl1 | −177.26 (11) | C23—C24—C25—C26 | 0.8 (2) |
C1—C11—C12—Cl1 | 5.75 (17) | Cl3—C24—C25—C26 | −178.21 (11) |
C11—C12—C13—C14 | 1.4 (2) | C22—C21—C26—C25 | −0.4 (2) |
Cl1—C12—C13—C14 | 179.14 (11) | N2—C21—C26—C25 | 175.42 (12) |
C12—C13—C14—C15 | −1.8 (2) | C24—C25—C26—C21 | −0.1 (2) |
C12—C13—C14—Cl2 | 177.96 (11) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···S1i | 0.84 (2) | 2.71 (2) | 3.4273 (12) | 144.3 (16) |
N2—H2···O1 | 0.81 (2) | 2.06 (2) | 2.7098 (16) | 136.4 (19) |
Symmetry codes: (i) −x+2, −y+2, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RK2121).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680900004X/rk2121sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680900004X/rk2121Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report