Abstract
In the molecule of the title compound, C16H13FO2, the aromatic rings are oriented at a dihedral angle of 74.46 (4)°. The heterocyclic ring adopts a twisted conformation. In the crystal structure, there is a weak C—H⋯π interaction.
Related literature
For related structures, see: Schmalle et al. (1982 ▶); Schnebel et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶). For details of the Cambridge Structural Database, see: Allen (2002 ▶).
Experimental
Crystal data
C16H13FO2
M r = 256.26
Monoclinic,
a = 12.6154 (16) Å
b = 7.6918 (10) Å
c = 13.0532 (17) Å
β = 103.705 (2)°
V = 1230.6 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 100 (2) K
0.50 × 0.40 × 0.10 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: none
6739 measured reflections
2501 independent reflections
1805 reflections with I > 2σ(I)
R int = 0.055
Refinement
R[F 2 > 2σ(F 2)] = 0.042
wR(F 2) = 0.096
S = 0.93
2501 reflections
172 parameters
H-atom parameters constrained
Δρmax = 0.24 e Å−3
Δρmin = −0.19 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003304/hk2616sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003304/hk2616Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C3–C8 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C12—H12⋯Cg1i | 0.95 | 2.95 | 3.806 (3) | 151 |
Symmetry code: (i)
.
Acknowledgments
The authors gratefully acknowledge the financial support of the Higher Education Commission, Islamabad, Pakistan.
supplementary crystallographic information
Comment
The title compound was prepared in order to evalute its potential as antibacterial and antifungal agents. The CCDC search (Allen, 2002) showed that the crystal structures of rac-exo-tricarbonyl-(h6-3-phenyl isochromanone)chromium (Schnebel et al., 2003) and 3,4-dihydro-8-hydroxy-3-(4-hydroxyphenyl)isocoumarin (Schmalle et al., 1982) have been reported, which have close resemblance as far as isochromane and attached phenyl ring is considered. We report herein the synthesis and crystal structure of the title compound.
In the molecule of the title compound (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Rings A (C3–C8) and C (C11–C16) are, of course, planar, and they are oriented at a dihedral angle of 74.46 (4)°. Ring B (O1/C1–C3/C8/C9) is not planar, having total puckering amplitude, QT, of 0.467 (3) Å and twisted conformation [φ = -105.12 (3)° and θ = 118.02 (3)°] (Cremer & Pople, 1975).
In the crystal structure, there is a C—H···π interaction (Table 1).
Experimental
As shown in Scheme 2, a mixture of homophthalic acid (1.98 g, 11.0 mmol) and 2-(3-fluorophenyl) acetyl chloride (7.91 g, 46 mmol) was heated under reflux at 473 K. After concentration, the residue was chromatographed on silica gel column using petroleum ether (333–353 K) to give 3-(3-fluorobenzyl)-1H-isochromen-1-one. 2-(3-(3-fluorophenyl)-2-oxopropyl)benzoic acid was obtained by refluxing a solution of 3-(3-fluorobenzyl)-1H-isochromen-1-one (3.6 g, 15.9 mmol) in ethanol (200 ml) and potassium hydroxide (5%,200 ml) for 6 h. NaBH4 (1.6 g) was added to a solution of 2-(3-(3-fluorophenyl)-2-oxopropyl)benzoic acid (4.23 g, 17.8 mmol) in sodium hydroxide (1%, 180 ml), and the resulting solution was stirred overnight at room temperature. After being acidified with HCl, the whole mixture was extracted with dichloromethane (2 × 15 ml). Usual work-up gave crude racemic hydroxy-acid, 2-(3-(3-fluorophenyl)-2-hydroxy propyl)benzoic acid, which was dissolved in acetic anhydride (5 ml) and heated under reflux for 2 h to get the title compound (yield; 81%, m.p, 374–375 °). The crude compound was purified by column chromatography on silica gel with petroleum ether and recrystallized in ethanol.
Refinement
H atoms were positioned geometrically, with C—H = 0.95, 1.00 and 0.99 Å for aromatic, methine and methylene H, respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Fig. 2.
The formation of the title compound.
Crystal data
| C16H13FO2 | F(000) = 536 |
| Mr = 256.26 | Dx = 1.383 Mg m−3 |
| Monoclinic, P21/c | Melting point: 374(1) K |
| Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
| a = 12.6154 (16) Å | Cell parameters from 1804 reflections |
| b = 7.6918 (10) Å | θ = 3.2–26.2° |
| c = 13.0532 (17) Å | µ = 0.10 mm−1 |
| β = 103.705 (2)° | T = 100 K |
| V = 1230.6 (3) Å3 | Plate, colourless |
| Z = 4 | 0.50 × 0.40 × 0.10 mm |
Data collection
| Bruker SMART CCD area-detector diffractometer | 1805 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.055 |
| graphite | θmax = 26.4°, θmin = 1.7° |
| φ and ω scans | h = −15→15 |
| 6739 measured reflections | k = −8→9 |
| 2501 independent reflections | l = −16→9 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.096 | H-atom parameters constrained |
| S = 0.93 | w = 1/[σ2(Fo2) + (0.0463P)2] where P = (Fo2 + 2Fc2)/3 |
| 2501 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| F1 | 0.04488 (8) | 0.11657 (13) | 0.39583 (8) | 0.0386 (3) | |
| O1 | 0.45079 (8) | 0.20180 (13) | 0.44056 (8) | 0.0218 (3) | |
| O2 | 0.50042 (9) | 0.34257 (14) | 0.59049 (9) | 0.0268 (3) | |
| C1 | 0.47167 (12) | 0.1662 (2) | 0.33687 (12) | 0.0196 (4) | |
| H1 | 0.4666 | 0.2776 | 0.2964 | 0.024* | |
| C2 | 0.58453 (12) | 0.0910 (2) | 0.34910 (13) | 0.0212 (4) | |
| H2A | 0.5877 | −0.0258 | 0.3815 | 0.025* | |
| H2B | 0.6005 | 0.0783 | 0.2788 | 0.025* | |
| C3 | 0.66870 (12) | 0.20666 (19) | 0.41701 (12) | 0.0200 (4) | |
| C4 | 0.77528 (12) | 0.2189 (2) | 0.40595 (13) | 0.0241 (4) | |
| H4 | 0.7972 | 0.1532 | 0.3529 | 0.029* | |
| C5 | 0.84964 (13) | 0.3259 (2) | 0.47153 (14) | 0.0288 (4) | |
| H5 | 0.9225 | 0.3325 | 0.4636 | 0.035* | |
| C6 | 0.81851 (13) | 0.4239 (2) | 0.54894 (14) | 0.0295 (4) | |
| H6 | 0.8699 | 0.4974 | 0.5938 | 0.035* | |
| C7 | 0.71298 (13) | 0.4138 (2) | 0.56045 (14) | 0.0259 (4) | |
| H7 | 0.6915 | 0.4811 | 0.6131 | 0.031* | |
| C8 | 0.63765 (12) | 0.30552 (19) | 0.49515 (13) | 0.0206 (4) | |
| C9 | 0.52632 (13) | 0.28886 (19) | 0.51240 (13) | 0.0214 (4) | |
| C10 | 0.38215 (12) | 0.0446 (2) | 0.28054 (13) | 0.0219 (4) | |
| H10A | 0.3948 | 0.0162 | 0.2104 | 0.026* | |
| H10B | 0.3872 | −0.0651 | 0.3211 | 0.026* | |
| C11 | 0.26821 (12) | 0.1165 (2) | 0.26575 (13) | 0.0209 (4) | |
| C12 | 0.20723 (12) | 0.0833 (2) | 0.33946 (13) | 0.0230 (4) | |
| H12 | 0.2368 | 0.0155 | 0.4003 | 0.028* | |
| C13 | 0.10394 (13) | 0.1499 (2) | 0.32292 (14) | 0.0256 (4) | |
| C14 | 0.05618 (14) | 0.2488 (2) | 0.23648 (15) | 0.0301 (4) | |
| H14 | −0.0159 | 0.2923 | 0.2272 | 0.036* | |
| C15 | 0.11730 (13) | 0.2824 (2) | 0.16351 (15) | 0.0310 (4) | |
| H15 | 0.0871 | 0.3507 | 0.1030 | 0.037* | |
| C16 | 0.22210 (13) | 0.2173 (2) | 0.17798 (14) | 0.0263 (4) | |
| H16 | 0.2631 | 0.2417 | 0.1273 | 0.032* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| F1 | 0.0329 (6) | 0.0451 (7) | 0.0432 (7) | −0.0007 (5) | 0.0195 (5) | −0.0039 (5) |
| O1 | 0.0239 (6) | 0.0238 (6) | 0.0181 (6) | 0.0009 (5) | 0.0059 (5) | −0.0008 (5) |
| O2 | 0.0334 (7) | 0.0281 (6) | 0.0203 (7) | 0.0060 (5) | 0.0091 (6) | −0.0012 (5) |
| C1 | 0.0257 (8) | 0.0187 (8) | 0.0150 (8) | 0.0008 (6) | 0.0058 (7) | 0.0018 (7) |
| C2 | 0.0258 (9) | 0.0201 (8) | 0.0189 (9) | 0.0005 (7) | 0.0079 (7) | −0.0004 (7) |
| C3 | 0.0242 (8) | 0.0161 (8) | 0.0189 (9) | 0.0045 (6) | 0.0038 (7) | 0.0046 (7) |
| C4 | 0.0251 (9) | 0.0212 (8) | 0.0262 (10) | 0.0028 (7) | 0.0065 (8) | 0.0008 (7) |
| C5 | 0.0221 (9) | 0.0258 (9) | 0.0380 (11) | 0.0020 (7) | 0.0063 (8) | 0.0015 (8) |
| C6 | 0.0271 (9) | 0.0229 (9) | 0.0341 (11) | −0.0002 (7) | −0.0016 (8) | −0.0044 (8) |
| C7 | 0.0311 (9) | 0.0210 (9) | 0.0236 (10) | 0.0053 (7) | 0.0028 (8) | −0.0020 (7) |
| C8 | 0.0241 (8) | 0.0175 (8) | 0.0191 (9) | 0.0043 (6) | 0.0028 (7) | 0.0029 (7) |
| C9 | 0.0286 (9) | 0.0163 (8) | 0.0190 (9) | 0.0046 (7) | 0.0052 (8) | 0.0041 (7) |
| C10 | 0.0263 (9) | 0.0183 (8) | 0.0218 (9) | −0.0005 (6) | 0.0070 (8) | 0.0004 (7) |
| C11 | 0.0238 (9) | 0.0157 (8) | 0.0220 (9) | −0.0038 (6) | 0.0031 (7) | −0.0029 (7) |
| C12 | 0.0255 (9) | 0.0198 (8) | 0.0221 (9) | −0.0009 (7) | 0.0028 (8) | −0.0002 (7) |
| C13 | 0.0248 (9) | 0.0247 (9) | 0.0293 (10) | −0.0048 (7) | 0.0100 (8) | −0.0063 (8) |
| C14 | 0.0219 (9) | 0.0236 (9) | 0.0409 (12) | 0.0016 (7) | −0.0002 (8) | −0.0077 (8) |
| C15 | 0.0314 (10) | 0.0248 (9) | 0.0312 (11) | −0.0001 (7) | −0.0039 (9) | 0.0033 (8) |
| C16 | 0.0290 (9) | 0.0249 (9) | 0.0232 (10) | −0.0051 (7) | 0.0030 (8) | 0.0013 (8) |
Geometric parameters (Å, °)
| F1—C13 | 1.3648 (19) | C6—H6 | 0.9500 |
| O1—C1 | 1.4646 (18) | C7—C8 | 1.393 (2) |
| O1—C9 | 1.3461 (19) | C7—H7 | 0.9500 |
| O2—C9 | 1.2141 (19) | C8—C9 | 1.480 (2) |
| C1—C2 | 1.510 (2) | C10—C11 | 1.509 (2) |
| C1—C10 | 1.516 (2) | C10—H10A | 0.9900 |
| C1—H1 | 1.0000 | C10—H10B | 0.9900 |
| C2—C3 | 1.503 (2) | C11—C12 | 1.391 (2) |
| C2—H2A | 0.9900 | C11—C16 | 1.391 (2) |
| C2—H2B | 0.9900 | C12—C13 | 1.369 (2) |
| C3—C4 | 1.389 (2) | C12—H12 | 0.9500 |
| C3—C8 | 1.400 (2) | C13—C14 | 1.376 (3) |
| C4—C5 | 1.382 (2) | C14—C15 | 1.384 (2) |
| C4—H4 | 0.9500 | C14—H14 | 0.9500 |
| C5—C6 | 1.390 (2) | C15—C16 | 1.384 (2) |
| C5—H5 | 0.9500 | C15—H15 | 0.9500 |
| C6—C7 | 1.377 (2) | C16—H16 | 0.9500 |
| C9—O1—C1 | 118.95 (12) | C7—C8—C9 | 119.56 (14) |
| O1—C1—C2 | 110.20 (13) | C3—C8—C9 | 120.21 (14) |
| O1—C1—C10 | 106.69 (12) | O2—C9—O1 | 117.85 (14) |
| C2—C1—C10 | 112.96 (13) | O2—C9—C8 | 123.52 (15) |
| O1—C1—H1 | 109.0 | O1—C9—C8 | 118.54 (14) |
| C2—C1—H1 | 109.0 | C11—C10—C1 | 114.41 (13) |
| C10—C1—H1 | 109.0 | C11—C10—H10A | 108.7 |
| C3—C2—C1 | 110.62 (12) | C1—C10—H10A | 108.7 |
| C3—C2—H2A | 109.5 | C11—C10—H10B | 108.7 |
| C1—C2—H2A | 109.5 | C1—C10—H10B | 108.7 |
| C3—C2—H2B | 109.5 | H10A—C10—H10B | 107.6 |
| C1—C2—H2B | 109.5 | C12—C11—C16 | 118.69 (15) |
| H2A—C2—H2B | 108.1 | C12—C11—C10 | 120.69 (15) |
| C4—C3—C8 | 118.91 (15) | C16—C11—C10 | 120.61 (15) |
| C4—C3—C2 | 123.01 (14) | C13—C12—C11 | 118.96 (16) |
| C8—C3—C2 | 118.07 (14) | C13—C12—H12 | 120.5 |
| C5—C4—C3 | 120.51 (15) | C11—C12—H12 | 120.5 |
| C5—C4—H4 | 119.7 | F1—C13—C12 | 118.44 (16) |
| C3—C4—H4 | 119.7 | F1—C13—C14 | 118.07 (15) |
| C4—C5—C6 | 120.40 (15) | C12—C13—C14 | 123.49 (17) |
| C4—C5—H5 | 119.8 | C13—C14—C15 | 117.42 (15) |
| C6—C5—H5 | 119.8 | C13—C14—H14 | 121.3 |
| C7—C6—C5 | 119.75 (16) | C15—C14—H14 | 121.3 |
| C7—C6—H6 | 120.1 | C14—C15—C16 | 120.54 (17) |
| C5—C6—H6 | 120.1 | C14—C15—H15 | 119.7 |
| C6—C7—C8 | 120.26 (16) | C16—C15—H15 | 119.7 |
| C6—C7—H7 | 119.9 | C15—C16—C11 | 120.89 (16) |
| C8—C7—H7 | 119.9 | C15—C16—H16 | 119.6 |
| C7—C8—C3 | 120.17 (15) | C11—C16—H16 | 119.6 |
| C9—O1—C1—C2 | 48.49 (17) | C7—C8—C9—O2 | −12.0 (2) |
| C9—O1—C1—C10 | 171.47 (12) | C3—C8—C9—O2 | 164.92 (15) |
| O1—C1—C2—C3 | −53.65 (16) | C7—C8—C9—O1 | 171.54 (14) |
| C10—C1—C2—C3 | −172.87 (13) | C3—C8—C9—O1 | −11.5 (2) |
| C1—C2—C3—C4 | −150.46 (15) | O1—C1—C10—C11 | 59.46 (17) |
| C1—C2—C3—C8 | 29.9 (2) | C2—C1—C10—C11 | −179.30 (14) |
| C8—C3—C4—C5 | 0.5 (2) | C1—C10—C11—C12 | −92.74 (17) |
| C2—C3—C4—C5 | −179.19 (15) | C1—C10—C11—C16 | 87.32 (19) |
| C3—C4—C5—C6 | −0.5 (2) | C16—C11—C12—C13 | 0.4 (2) |
| C4—C5—C6—C7 | 0.1 (3) | C10—C11—C12—C13 | −179.59 (14) |
| C5—C6—C7—C8 | 0.3 (3) | C11—C12—C13—F1 | −179.96 (13) |
| C6—C7—C8—C3 | −0.3 (2) | C11—C12—C13—C14 | 0.1 (2) |
| C6—C7—C8—C9 | 176.63 (14) | F1—C13—C14—C15 | 179.63 (14) |
| C4—C3—C8—C7 | −0.1 (2) | C12—C13—C14—C15 | −0.5 (3) |
| C2—C3—C8—C7 | 179.61 (14) | C13—C14—C15—C16 | 0.3 (2) |
| C4—C3—C8—C9 | −176.99 (14) | C14—C15—C16—C11 | 0.1 (2) |
| C2—C3—C8—C9 | 2.7 (2) | C12—C11—C16—C15 | −0.5 (2) |
| C1—O1—C9—O2 | 167.83 (13) | C10—C11—C16—C15 | 179.45 (14) |
| C1—O1—C9—C8 | −15.51 (19) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C12—H12···Cg1i | 0.95 | 2.95 | 3.806 (3) | 151 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2616).
References
- Allen, F. H. (2002). Acta Cryst. B58, 380–388. [DOI] [PubMed]
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bruker (2001). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2002). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc.97, 1354–1358.
- Schmalle, H. W., Jarchow, O. H., Hausen, B. M. & Schulz, K.-H. (1982). Acta Cryst. B38, 2938–2941.
- Schnebel, M., Weidner, I., Wartchow, R. & Butenschon, H. (2003). Eur. J. Org. Chem. pp. 4363–4372.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003304/hk2616sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003304/hk2616Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


