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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jan 31;65(Pt 2):o418. doi: 10.1107/S1600536809003304

3-(3-Fluoro­benz­yl)isochroman-1-one

Tariq Mahmood Babar a, Ghulam Qadeer a,*, Nasim Hasan Rama a, Javeed Akhtar b, Madeleine Helliwell b
PMCID: PMC2968246  PMID: 21582007

Abstract

In the mol­ecule of the title compound, C16H13FO2, the aromatic rings are oriented at a dihedral angle of 74.46 (4)°. The heterocyclic ring adopts a twisted conformation. In the crystal structure, there is a weak C—H⋯π inter­action.

Related literature

For related structures, see: Schmalle et al. (1982); Schnebel et al. (2003). For bond-length data, see: Allen et al. (1987). For ring-puckering parameters, see: Cremer & Pople (1975). For details of the Cambridge Structural Database, see: Allen (2002).graphic file with name e-65-0o418-scheme1.jpg

Experimental

Crystal data

  • C16H13FO2

  • M r = 256.26

  • Monoclinic, Inline graphic

  • a = 12.6154 (16) Å

  • b = 7.6918 (10) Å

  • c = 13.0532 (17) Å

  • β = 103.705 (2)°

  • V = 1230.6 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 100 (2) K

  • 0.50 × 0.40 × 0.10 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: none

  • 6739 measured reflections

  • 2501 independent reflections

  • 1805 reflections with I > 2σ(I)

  • R int = 0.055

Refinement

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.096

  • S = 0.93

  • 2501 reflections

  • 172 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003304/hk2616sup1.cif

e-65-0o418-sup1.cif (17.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003304/hk2616Isup2.hkl

e-65-0o418-Isup2.hkl (122.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the C3–C8 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C12—H12⋯Cg1i 0.95 2.95 3.806 (3) 151

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors gratefully acknowledge the financial support of the Higher Education Commission, Islamabad, Pakistan.

supplementary crystallographic information

Comment

The title compound was prepared in order to evalute its potential as antibacterial and antifungal agents. The CCDC search (Allen, 2002) showed that the crystal structures of rac-exo-tricarbonyl-(h6-3-phenyl isochromanone)chromium (Schnebel et al., 2003) and 3,4-dihydro-8-hydroxy-3-(4-hydroxyphenyl)isocoumarin (Schmalle et al., 1982) have been reported, which have close resemblance as far as isochromane and attached phenyl ring is considered. We report herein the synthesis and crystal structure of the title compound.

In the molecule of the title compound (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Rings A (C3–C8) and C (C11–C16) are, of course, planar, and they are oriented at a dihedral angle of 74.46 (4)°. Ring B (O1/C1–C3/C8/C9) is not planar, having total puckering amplitude, QT, of 0.467 (3) Å and twisted conformation [φ = -105.12 (3)° and θ = 118.02 (3)°] (Cremer & Pople, 1975).

In the crystal structure, there is a C—H···π interaction (Table 1).

Experimental

As shown in Scheme 2, a mixture of homophthalic acid (1.98 g, 11.0 mmol) and 2-(3-fluorophenyl) acetyl chloride (7.91 g, 46 mmol) was heated under reflux at 473 K. After concentration, the residue was chromatographed on silica gel column using petroleum ether (333–353 K) to give 3-(3-fluorobenzyl)-1H-isochromen-1-one. 2-(3-(3-fluorophenyl)-2-oxopropyl)benzoic acid was obtained by refluxing a solution of 3-(3-fluorobenzyl)-1H-isochromen-1-one (3.6 g, 15.9 mmol) in ethanol (200 ml) and potassium hydroxide (5%,200 ml) for 6 h. NaBH4 (1.6 g) was added to a solution of 2-(3-(3-fluorophenyl)-2-oxopropyl)benzoic acid (4.23 g, 17.8 mmol) in sodium hydroxide (1%, 180 ml), and the resulting solution was stirred overnight at room temperature. After being acidified with HCl, the whole mixture was extracted with dichloromethane (2 × 15 ml). Usual work-up gave crude racemic hydroxy-acid, 2-(3-(3-fluorophenyl)-2-hydroxy propyl)benzoic acid, which was dissolved in acetic anhydride (5 ml) and heated under reflux for 2 h to get the title compound (yield; 81%, m.p, 374–375 °). The crude compound was purified by column chromatography on silica gel with petroleum ether and recrystallized in ethanol.

Refinement

H atoms were positioned geometrically, with C—H = 0.95, 1.00 and 0.99 Å for aromatic, methine and methylene H, respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The formation of the title compound.

Crystal data

C16H13FO2 F(000) = 536
Mr = 256.26 Dx = 1.383 Mg m3
Monoclinic, P21/c Melting point: 374(1) K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 12.6154 (16) Å Cell parameters from 1804 reflections
b = 7.6918 (10) Å θ = 3.2–26.2°
c = 13.0532 (17) Å µ = 0.10 mm1
β = 103.705 (2)° T = 100 K
V = 1230.6 (3) Å3 Plate, colourless
Z = 4 0.50 × 0.40 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer 1805 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.055
graphite θmax = 26.4°, θmin = 1.7°
φ and ω scans h = −15→15
6739 measured reflections k = −8→9
2501 independent reflections l = −16→9

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096 H-atom parameters constrained
S = 0.93 w = 1/[σ2(Fo2) + (0.0463P)2] where P = (Fo2 + 2Fc2)/3
2501 reflections (Δ/σ)max < 0.001
172 parameters Δρmax = 0.24 e Å3
0 restraints Δρmin = −0.19 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 0.04488 (8) 0.11657 (13) 0.39583 (8) 0.0386 (3)
O1 0.45079 (8) 0.20180 (13) 0.44056 (8) 0.0218 (3)
O2 0.50042 (9) 0.34257 (14) 0.59049 (9) 0.0268 (3)
C1 0.47167 (12) 0.1662 (2) 0.33687 (12) 0.0196 (4)
H1 0.4666 0.2776 0.2964 0.024*
C2 0.58453 (12) 0.0910 (2) 0.34910 (13) 0.0212 (4)
H2A 0.5877 −0.0258 0.3815 0.025*
H2B 0.6005 0.0783 0.2788 0.025*
C3 0.66870 (12) 0.20666 (19) 0.41701 (12) 0.0200 (4)
C4 0.77528 (12) 0.2189 (2) 0.40595 (13) 0.0241 (4)
H4 0.7972 0.1532 0.3529 0.029*
C5 0.84964 (13) 0.3259 (2) 0.47153 (14) 0.0288 (4)
H5 0.9225 0.3325 0.4636 0.035*
C6 0.81851 (13) 0.4239 (2) 0.54894 (14) 0.0295 (4)
H6 0.8699 0.4974 0.5938 0.035*
C7 0.71298 (13) 0.4138 (2) 0.56045 (14) 0.0259 (4)
H7 0.6915 0.4811 0.6131 0.031*
C8 0.63765 (12) 0.30552 (19) 0.49515 (13) 0.0206 (4)
C9 0.52632 (13) 0.28886 (19) 0.51240 (13) 0.0214 (4)
C10 0.38215 (12) 0.0446 (2) 0.28054 (13) 0.0219 (4)
H10A 0.3948 0.0162 0.2104 0.026*
H10B 0.3872 −0.0651 0.3211 0.026*
C11 0.26821 (12) 0.1165 (2) 0.26575 (13) 0.0209 (4)
C12 0.20723 (12) 0.0833 (2) 0.33946 (13) 0.0230 (4)
H12 0.2368 0.0155 0.4003 0.028*
C13 0.10394 (13) 0.1499 (2) 0.32292 (14) 0.0256 (4)
C14 0.05618 (14) 0.2488 (2) 0.23648 (15) 0.0301 (4)
H14 −0.0159 0.2923 0.2272 0.036*
C15 0.11730 (13) 0.2824 (2) 0.16351 (15) 0.0310 (4)
H15 0.0871 0.3507 0.1030 0.037*
C16 0.22210 (13) 0.2173 (2) 0.17798 (14) 0.0263 (4)
H16 0.2631 0.2417 0.1273 0.032*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.0329 (6) 0.0451 (7) 0.0432 (7) −0.0007 (5) 0.0195 (5) −0.0039 (5)
O1 0.0239 (6) 0.0238 (6) 0.0181 (6) 0.0009 (5) 0.0059 (5) −0.0008 (5)
O2 0.0334 (7) 0.0281 (6) 0.0203 (7) 0.0060 (5) 0.0091 (6) −0.0012 (5)
C1 0.0257 (8) 0.0187 (8) 0.0150 (8) 0.0008 (6) 0.0058 (7) 0.0018 (7)
C2 0.0258 (9) 0.0201 (8) 0.0189 (9) 0.0005 (7) 0.0079 (7) −0.0004 (7)
C3 0.0242 (8) 0.0161 (8) 0.0189 (9) 0.0045 (6) 0.0038 (7) 0.0046 (7)
C4 0.0251 (9) 0.0212 (8) 0.0262 (10) 0.0028 (7) 0.0065 (8) 0.0008 (7)
C5 0.0221 (9) 0.0258 (9) 0.0380 (11) 0.0020 (7) 0.0063 (8) 0.0015 (8)
C6 0.0271 (9) 0.0229 (9) 0.0341 (11) −0.0002 (7) −0.0016 (8) −0.0044 (8)
C7 0.0311 (9) 0.0210 (9) 0.0236 (10) 0.0053 (7) 0.0028 (8) −0.0020 (7)
C8 0.0241 (8) 0.0175 (8) 0.0191 (9) 0.0043 (6) 0.0028 (7) 0.0029 (7)
C9 0.0286 (9) 0.0163 (8) 0.0190 (9) 0.0046 (7) 0.0052 (8) 0.0041 (7)
C10 0.0263 (9) 0.0183 (8) 0.0218 (9) −0.0005 (6) 0.0070 (8) 0.0004 (7)
C11 0.0238 (9) 0.0157 (8) 0.0220 (9) −0.0038 (6) 0.0031 (7) −0.0029 (7)
C12 0.0255 (9) 0.0198 (8) 0.0221 (9) −0.0009 (7) 0.0028 (8) −0.0002 (7)
C13 0.0248 (9) 0.0247 (9) 0.0293 (10) −0.0048 (7) 0.0100 (8) −0.0063 (8)
C14 0.0219 (9) 0.0236 (9) 0.0409 (12) 0.0016 (7) −0.0002 (8) −0.0077 (8)
C15 0.0314 (10) 0.0248 (9) 0.0312 (11) −0.0001 (7) −0.0039 (9) 0.0033 (8)
C16 0.0290 (9) 0.0249 (9) 0.0232 (10) −0.0051 (7) 0.0030 (8) 0.0013 (8)

Geometric parameters (Å, °)

F1—C13 1.3648 (19) C6—H6 0.9500
O1—C1 1.4646 (18) C7—C8 1.393 (2)
O1—C9 1.3461 (19) C7—H7 0.9500
O2—C9 1.2141 (19) C8—C9 1.480 (2)
C1—C2 1.510 (2) C10—C11 1.509 (2)
C1—C10 1.516 (2) C10—H10A 0.9900
C1—H1 1.0000 C10—H10B 0.9900
C2—C3 1.503 (2) C11—C12 1.391 (2)
C2—H2A 0.9900 C11—C16 1.391 (2)
C2—H2B 0.9900 C12—C13 1.369 (2)
C3—C4 1.389 (2) C12—H12 0.9500
C3—C8 1.400 (2) C13—C14 1.376 (3)
C4—C5 1.382 (2) C14—C15 1.384 (2)
C4—H4 0.9500 C14—H14 0.9500
C5—C6 1.390 (2) C15—C16 1.384 (2)
C5—H5 0.9500 C15—H15 0.9500
C6—C7 1.377 (2) C16—H16 0.9500
C9—O1—C1 118.95 (12) C7—C8—C9 119.56 (14)
O1—C1—C2 110.20 (13) C3—C8—C9 120.21 (14)
O1—C1—C10 106.69 (12) O2—C9—O1 117.85 (14)
C2—C1—C10 112.96 (13) O2—C9—C8 123.52 (15)
O1—C1—H1 109.0 O1—C9—C8 118.54 (14)
C2—C1—H1 109.0 C11—C10—C1 114.41 (13)
C10—C1—H1 109.0 C11—C10—H10A 108.7
C3—C2—C1 110.62 (12) C1—C10—H10A 108.7
C3—C2—H2A 109.5 C11—C10—H10B 108.7
C1—C2—H2A 109.5 C1—C10—H10B 108.7
C3—C2—H2B 109.5 H10A—C10—H10B 107.6
C1—C2—H2B 109.5 C12—C11—C16 118.69 (15)
H2A—C2—H2B 108.1 C12—C11—C10 120.69 (15)
C4—C3—C8 118.91 (15) C16—C11—C10 120.61 (15)
C4—C3—C2 123.01 (14) C13—C12—C11 118.96 (16)
C8—C3—C2 118.07 (14) C13—C12—H12 120.5
C5—C4—C3 120.51 (15) C11—C12—H12 120.5
C5—C4—H4 119.7 F1—C13—C12 118.44 (16)
C3—C4—H4 119.7 F1—C13—C14 118.07 (15)
C4—C5—C6 120.40 (15) C12—C13—C14 123.49 (17)
C4—C5—H5 119.8 C13—C14—C15 117.42 (15)
C6—C5—H5 119.8 C13—C14—H14 121.3
C7—C6—C5 119.75 (16) C15—C14—H14 121.3
C7—C6—H6 120.1 C14—C15—C16 120.54 (17)
C5—C6—H6 120.1 C14—C15—H15 119.7
C6—C7—C8 120.26 (16) C16—C15—H15 119.7
C6—C7—H7 119.9 C15—C16—C11 120.89 (16)
C8—C7—H7 119.9 C15—C16—H16 119.6
C7—C8—C3 120.17 (15) C11—C16—H16 119.6
C9—O1—C1—C2 48.49 (17) C7—C8—C9—O2 −12.0 (2)
C9—O1—C1—C10 171.47 (12) C3—C8—C9—O2 164.92 (15)
O1—C1—C2—C3 −53.65 (16) C7—C8—C9—O1 171.54 (14)
C10—C1—C2—C3 −172.87 (13) C3—C8—C9—O1 −11.5 (2)
C1—C2—C3—C4 −150.46 (15) O1—C1—C10—C11 59.46 (17)
C1—C2—C3—C8 29.9 (2) C2—C1—C10—C11 −179.30 (14)
C8—C3—C4—C5 0.5 (2) C1—C10—C11—C12 −92.74 (17)
C2—C3—C4—C5 −179.19 (15) C1—C10—C11—C16 87.32 (19)
C3—C4—C5—C6 −0.5 (2) C16—C11—C12—C13 0.4 (2)
C4—C5—C6—C7 0.1 (3) C10—C11—C12—C13 −179.59 (14)
C5—C6—C7—C8 0.3 (3) C11—C12—C13—F1 −179.96 (13)
C6—C7—C8—C3 −0.3 (2) C11—C12—C13—C14 0.1 (2)
C6—C7—C8—C9 176.63 (14) F1—C13—C14—C15 179.63 (14)
C4—C3—C8—C7 −0.1 (2) C12—C13—C14—C15 −0.5 (3)
C2—C3—C8—C7 179.61 (14) C13—C14—C15—C16 0.3 (2)
C4—C3—C8—C9 −176.99 (14) C14—C15—C16—C11 0.1 (2)
C2—C3—C8—C9 2.7 (2) C12—C11—C16—C15 −0.5 (2)
C1—O1—C9—O2 167.83 (13) C10—C11—C16—C15 179.45 (14)
C1—O1—C9—C8 −15.51 (19)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C12—H12···Cg1i 0.95 2.95 3.806 (3) 151

Symmetry codes: (i) −x+1, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HK2616).

References

  1. Allen, F. H. (2002). Acta Cryst. B58, 380–388. [DOI] [PubMed]
  2. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  3. Bruker (2001). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Bruker (2002). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  5. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc.97, 1354–1358.
  6. Schmalle, H. W., Jarchow, O. H., Hausen, B. M. & Schulz, K.-H. (1982). Acta Cryst. B38, 2938–2941.
  7. Schnebel, M., Weidner, I., Wartchow, R. & Butenschon, H. (2003). Eur. J. Org. Chem. pp. 4363–4372.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003304/hk2616sup1.cif

e-65-0o418-sup1.cif (17.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003304/hk2616Isup2.hkl

e-65-0o418-Isup2.hkl (122.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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