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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Jan 31;65(Pt 2):m241. doi: 10.1107/S1600536809002682

Aqua­bis(2-iodo­acetato-κO)(1,10-phenanthroline-κ2 N,N′)copper(II)

Rengao Zhao a, Junshan Sun a,*, Jie Lu b, Jikun Li a
PMCID: PMC2968381  PMID: 21581830

Abstract

In the title compound, [Cu(C2H2IO2)2(C12H8N2)(H2O)], the CuII ion is coordinated by two N atoms [Cu—N = 2.013 (4) and 2.024 (4) Å] from a 1,10-phenanthroline ligand and three O atoms [Cu—O = 1.940 (4)–2.261 (4) Å] from two carboxyl ligands and a water mol­ecule in a distorted square-pyramidal geometry. One iodo­acetate O atom [Cu—O = 2.775 (4) Å] completes the coordination to form a distorted octa­hedron. Inter­molecular O—H⋯O hydrogen bonds link the mol­ecules into centrosymmetric dimers, which are further packed by π–π inter­actions between the 1,10-phenanthroline ligands into layers parallel to the ab plane. The crystal packing also exhibits short inter­molecular I⋯I contacts of 3.6772 (9) Å and weak C—H⋯O hydrogen bonds.

Related literature

The related crystal structure of aqua­bis(2,4-dichlorophenoxy­acetato-O)(1,10-phenanthroline-κ2 N,N′)copper(II) has been reported by Liu et al. (2006).graphic file with name e-65-0m241-scheme1.jpg

Experimental

Crystal data

  • [Cu(C2H2IO2)2(C12H8N2)(H2O)]

  • M r = 631.63

  • Triclinic, Inline graphic

  • a = 9.5156 (11) Å

  • b = 10.6293 (12) Å

  • c = 11.3441 (13) Å

  • α = 65.803 (2)°

  • β = 65.598 (2)°

  • γ = 72.451 (2)°

  • V = 940.94 (19) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 4.47 mm−1

  • T = 273 (2) K

  • 0.26 × 0.23 × 0.21 mm

Data collection

  • Bruker SMART APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.389, T max = 0.454 (expected range = 0.336–0.391)

  • 4948 measured reflections

  • 3305 independent reflections

  • 2934 reflections with I > 2σ(I)

  • R int = 0.016

Refinement

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.104

  • S = 1.01

  • 3305 reflections

  • 237 parameters

  • 3 restraints

  • H-atom parameters constrained

  • Δρmax = 1.53 e Å−3

  • Δρmin = −1.68 e Å−3

Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809002682/cv2511sup1.cif

e-65-0m241-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002682/cv2511Isup2.hkl

e-65-0m241-Isup2.hkl (162.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected interatomic distances (Å).

Cg1, Cg2 and Cg3 are the centroids of the C4–C7/C11/C12, C6–C10/N2 and C1–C5/N1 rings, respectively.

Cg1⋯Cg3i 3.505 (6)
Cg1⋯Cg1ii 3.584 (6)
Cg2⋯Cg3i 3.625 (6)
Cg2⋯Cg1ii 3.634 (6)
I2⋯I2iii 3.6772 (9)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic, Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1B⋯O3 0.85 1.84 2.639 (6) 156
O1—H1C⋯O4iv 0.85 1.97 2.785 (5) 161
C3—H3⋯O1ii 0.93 2.44 3.240 (7) 144
C11—H11⋯O5i 0.93 2.71 3.508 (8) 144
C10—H10⋯O3iv 0.93 2.68 3.431 (8) 138
C14—H14B⋯O2v 0.97 2.59 3.436 (8) 146
C14—H14A⋯O5v 0.97 2.64 3.219 (8) 119

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iv) Inline graphic, Inline graphic; (v) Inline graphic.

Acknowledgments

The authors thank the Postgraduate Foundation of Taishan University (grant No. Y07-2-15) for financial support.

supplementary crystallographic information

Comment

Metal complexes with carboxylates are among the most investigated complexes in the field of coordination chemistry. Due to their versatile bonding modes with metal ions, they have also been used in the synthesis of mononuclear monomeric and polymeric complexes (Liu et al., 2006). In order to develop some new topological structures, we study the reaction of the copper(II) ion and 2-iodoacetic acid with the presence of 1,10-phenanthroline.

The molecular structure of the title complex is shown in Fig.1. The Cu atom exhibits a six-coordinated distorted octahedral pyramidal geometry with two carboxyl O atoms from (Cu2—O4 2.000 (4) Å, Cu2—O5 2.775 (4) Å), a water molecule (Cu—O 2.261 (4) Å) and a nitrogen atom (Cu2—N2 2.024 (4) Å) occupying the equatorial planar position. A nitrogen atom N2 (Cu2—N2 2.013 (4) Å) and a carboxyl O atom (Cu2—O2 1.940 (4) Å) occupy the apical positions. The displacement of the metal atom from the basal plane is 0.0640 (2) Å. The crystal packing exhibits short intermolecular I···I contacts (Table 1) and weak C—H···O hydrogen bonds (Table 2).

Experimental

The reaction was carried out by the solvothermal method. 2-iodoacetic acid(0.372 g,2 mmol) and cupric acetate(0.199 g, 1 mmol) and 1,10-phenanthroline(0.180 g, 1 mmol) were added to the airtight vessel with 20 ml water. The resulting green solution was filtered. The filtrate was placed for sevaral days yielding blue block-shaped crystals.

The yield is 81%. Elemental analysis: calc. for C16H14CuI2N2O5: C 30.42, H 2.23, N 4.43; found: C 30.15, H 2.49, N 4.22. The elemental analyses were performed with PERKIN ELMER MODEL 2400 SERIES II.

Refinement

All the H atoms were found in Fourier map, but placed in idealized positions(C—H 0.93–0.97 Å, O—H 0.85 Å), with the Uiso(H) values were set at 1.2Ueq(C,O) of the parent atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing the atomic numbering and 30% probability displacement ellipsoids.

Crystal data

[Cu(C2H2IO2)2(C12H8N2)(H2O)] Z = 2
Mr = 631.63 F(000) = 598
Triclinic, P1 Dx = 2.229 Mg m3
a = 9.5156 (11) Å Mo Kα radiation, λ = 0.71073 Å
b = 10.6293 (12) Å Cell parameters from 3047 reflections
c = 11.3441 (13) Å θ = 2.6–28.1°
α = 65.803 (2)° µ = 4.47 mm1
β = 65.598 (2)° T = 273 K
γ = 72.451 (2)° Block, blue
V = 940.94 (19) Å3 0.26 × 0.23 × 0.21 mm

Data collection

Bruker APEXII diffractometer 3305 independent reflections
Radiation source: fine-focus sealed tube 2934 reflections with I > 2σ(I)
graphite Rint = 0.016
φ and ω scans θmax = 25.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −11→11
Tmin = 0.389, Tmax = 0.454 k = −12→10
4948 measured reflections l = −13→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.056P)2 + 3.6149P] where P = (Fo2 + 2Fc2)/3
3305 reflections (Δ/σ)max < 0.001
237 parameters Δρmax = 1.53 e Å3
3 restraints Δρmin = −1.68 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu2 0.76967 (7) 0.67482 (6) 0.13753 (6) 0.02670 (17)
I1 0.95532 (7) 0.21497 (5) 0.43653 (6) 0.06644 (19)
I2 0.43146 (5) 0.18948 (4) 0.45215 (4) 0.04345 (15)
N1 0.6118 (5) 0.8490 (4) 0.1546 (4) 0.0255 (9)
N2 0.9024 (5) 0.8189 (4) −0.0095 (4) 0.0280 (9)
O1 0.7777 (4) 0.6019 (4) −0.0268 (4) 0.0341 (9)
H1C 0.8711 0.5671 −0.0635 0.031 (15)*
H1B 0.7272 0.5340 0.0231 0.06 (2)*
O2 0.6142 (4) 0.5607 (4) 0.2794 (4) 0.0359 (9)
O3 0.6083 (7) 0.4189 (6) 0.1825 (5) 0.0661 (15)
O4 0.9474 (4) 0.5270 (4) 0.1793 (4) 0.0329 (8)
O5 0.8852 (5) 0.6118 (4) 0.3468 (4) 0.0429 (10)
C1 0.4672 (6) 0.8592 (6) 0.2411 (5) 0.0307 (11)
H1A 0.4265 0.7782 0.3029 0.037*
C2 0.3740 (7) 0.9891 (6) 0.2417 (6) 0.0382 (13)
H2 0.2725 0.9934 0.3032 0.046*
C3 0.4311 (7) 1.1090 (6) 0.1529 (6) 0.0382 (13)
H3 0.3693 1.1954 0.1536 0.046*
C4 0.5840 (6) 1.1012 (5) 0.0602 (6) 0.0302 (11)
C5 0.6710 (6) 0.9677 (5) 0.0657 (5) 0.0241 (10)
C6 0.8265 (6) 0.9512 (5) −0.0244 (5) 0.0249 (10)
C7 0.8936 (6) 1.0689 (6) −0.1235 (5) 0.0305 (11)
C8 1.0481 (7) 1.0437 (6) −0.2087 (6) 0.0380 (13)
H8 1.0990 1.1181 −0.2742 0.046*
C9 1.1228 (7) 0.9109 (6) −0.1952 (6) 0.0392 (13)
H9 1.2240 0.8936 −0.2535 0.047*
C10 1.0475 (6) 0.8002 (6) −0.0934 (6) 0.0356 (12)
H10 1.1012 0.7096 −0.0841 0.043*
C11 0.8014 (8) 1.2041 (6) −0.1279 (7) 0.0432 (14)
H11 0.8440 1.2830 −0.1935 0.052*
C12 0.6551 (7) 1.2204 (6) −0.0396 (6) 0.0381 (13)
H12 0.5997 1.3098 −0.0436 0.046*
C13 0.5693 (6) 0.4601 (6) 0.2801 (6) 0.0336 (12)
C14 0.4522 (9) 0.3957 (7) 0.4171 (7) 0.0550 (19)
H14A 0.3507 0.4539 0.4228 0.066*
H14B 0.4825 0.3950 0.4891 0.066*
C15 0.9541 (6) 0.5230 (5) 0.2913 (5) 0.0293 (11)
C16 1.0576 (7) 0.3988 (6) 0.3569 (6) 0.0354 (12)
H16A 1.0700 0.4144 0.4303 0.043*
H16B 1.1602 0.3872 0.2894 0.043*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu2 0.0264 (3) 0.0205 (3) 0.0253 (3) −0.0018 (2) −0.0022 (3) −0.0080 (2)
I1 0.0913 (4) 0.0355 (3) 0.0650 (3) −0.0196 (2) −0.0323 (3) 0.0035 (2)
I2 0.0464 (3) 0.0329 (2) 0.0460 (3) −0.01190 (17) −0.00496 (18) −0.01484 (18)
N1 0.028 (2) 0.025 (2) 0.022 (2) −0.0010 (17) −0.0070 (17) −0.0096 (17)
N2 0.029 (2) 0.026 (2) 0.026 (2) −0.0039 (18) −0.0058 (18) −0.0100 (18)
O1 0.036 (2) 0.032 (2) 0.0267 (19) 0.0013 (18) −0.0049 (16) −0.0137 (17)
O2 0.040 (2) 0.031 (2) 0.031 (2) −0.0118 (17) 0.0021 (17) −0.0139 (16)
O3 0.093 (4) 0.070 (3) 0.038 (3) −0.050 (3) 0.012 (2) −0.030 (2)
O4 0.034 (2) 0.0286 (19) 0.0270 (19) 0.0040 (16) −0.0075 (16) −0.0095 (16)
O5 0.049 (2) 0.034 (2) 0.044 (2) −0.0013 (19) −0.0081 (19) −0.0224 (19)
C1 0.028 (3) 0.035 (3) 0.024 (3) −0.003 (2) −0.003 (2) −0.012 (2)
C2 0.031 (3) 0.046 (3) 0.032 (3) 0.003 (3) −0.007 (2) −0.018 (3)
C3 0.036 (3) 0.037 (3) 0.043 (3) 0.009 (2) −0.019 (3) −0.019 (3)
C4 0.034 (3) 0.027 (3) 0.037 (3) −0.001 (2) −0.019 (2) −0.013 (2)
C5 0.031 (3) 0.022 (2) 0.025 (2) −0.002 (2) −0.014 (2) −0.009 (2)
C6 0.025 (3) 0.025 (3) 0.025 (2) 0.000 (2) −0.010 (2) −0.010 (2)
C7 0.035 (3) 0.029 (3) 0.030 (3) −0.011 (2) −0.013 (2) −0.006 (2)
C8 0.040 (3) 0.042 (3) 0.032 (3) −0.020 (3) −0.010 (2) −0.005 (2)
C9 0.031 (3) 0.049 (4) 0.032 (3) −0.010 (3) −0.001 (2) −0.016 (3)
C10 0.032 (3) 0.038 (3) 0.031 (3) −0.002 (2) −0.002 (2) −0.017 (2)
C11 0.055 (4) 0.024 (3) 0.051 (4) −0.013 (3) −0.025 (3) −0.001 (3)
C12 0.042 (3) 0.025 (3) 0.050 (4) −0.002 (2) −0.022 (3) −0.010 (3)
C13 0.033 (3) 0.030 (3) 0.031 (3) −0.010 (2) −0.001 (2) −0.010 (2)
C14 0.071 (5) 0.048 (4) 0.039 (4) −0.034 (4) 0.013 (3) −0.022 (3)
C15 0.029 (3) 0.024 (3) 0.028 (3) −0.007 (2) −0.002 (2) −0.007 (2)
C16 0.040 (3) 0.034 (3) 0.033 (3) −0.003 (2) −0.015 (3) −0.010 (2)

Geometric parameters (Å, °)

Cu2—O2 1.940 (4) C3—C4 1.402 (8)
Cu2—O4 2.000 (4) C3—H3 0.9300
Cu2—O5 2.775 (4) C4—C5 1.402 (7)
Cu2—N2 2.013 (4) C4—C12 1.433 (8)
Cu2—N1 2.024 (4) C5—C6 1.416 (7)
Cu2—O1 2.261 (4) C6—C7 1.404 (7)
I1—C16 2.134 (6) C7—C8 1.403 (8)
I2—I2i 3.6772 (9) C7—C11 1.434 (8)
I2—C14 2.117 (6) C8—C9 1.352 (8)
N1—C1 1.322 (6) C8—H8 0.9300
N1—C5 1.357 (6) C9—C10 1.394 (8)
N2—C10 1.325 (7) C9—H9 0.9300
N2—C6 1.349 (6) C10—H10 0.9300
O1—H1C 0.8500 C11—C12 1.348 (9)
O1—H1B 0.8500 C11—H11 0.9300
O2—C13 1.262 (7) C12—H12 0.9300
O3—C13 1.230 (7) C13—C14 1.511 (8)
O4—C15 1.282 (6) C14—H14A 0.9700
O5—C15 1.221 (6) C14—H14B 0.9700
C1—C2 1.399 (8) C15—C16 1.510 (7)
C1—H1A 0.9300 C16—H16A 0.9700
C2—C3 1.359 (9) C16—H16B 0.9700
C2—H2 0.9300
Cg1···Cg3ii 3.505 (6) Cg2···Cg4iii 3.634 (6)
Cg1···Cg4iii 3.584 (6) I2···I2i 3.6772 (9)
Cg2···Cg3ii 3.625 (6)
O2—Cu2—O4 92.78 (16) C7—C6—C5 120.1 (4)
O2—Cu2—N2 170.83 (17) C8—C7—C6 116.6 (5)
O4—Cu2—N2 96.04 (17) C8—C7—C11 125.3 (5)
O2—Cu2—N1 89.71 (17) C6—C7—C11 118.1 (5)
O4—Cu2—N1 153.55 (16) C9—C8—C7 119.8 (5)
N2—Cu2—N1 81.29 (17) C9—C8—H8 120.1
O2—Cu2—O1 93.26 (15) C7—C8—H8 120.1
O4—Cu2—O1 92.60 (14) C8—C9—C10 119.7 (5)
N2—Cu2—O1 88.81 (16) C8—C9—H9 120.2
N1—Cu2—O1 113.56 (15) C10—C9—H9 120.2
C1—N1—C5 118.9 (4) N2—C10—C9 122.7 (5)
C1—N1—Cu2 128.7 (4) N2—C10—H10 118.7
C5—N1—Cu2 112.3 (3) C9—C10—H10 118.7
C10—N2—C6 117.8 (5) C12—C11—C7 122.0 (5)
C10—N2—Cu2 129.0 (4) C12—C11—H11 119.0
C6—N2—Cu2 113.1 (3) C7—C11—H11 119.0
Cu2—O1—H1C 109.3 C11—C12—C4 120.6 (5)
Cu2—O1—H1B 99.7 C11—C12—H12 119.7
H1C—O1—H1B 106.6 C4—C12—H12 119.7
C13—O2—Cu2 130.1 (3) O3—C13—O2 126.2 (5)
C15—O4—Cu2 108.2 (3) O3—C13—C14 122.0 (5)
N1—C1—C2 121.5 (5) O2—C13—C14 111.7 (5)
N1—C1—H1A 119.2 C13—C14—I2 113.9 (4)
C2—C1—H1A 119.2 C13—C14—H14A 108.8
C3—C2—C1 120.4 (5) I2—C14—H14A 108.8
C3—C2—H2 119.8 C13—C14—H14B 108.8
C1—C2—H2 119.8 I2—C14—H14B 108.8
C2—C3—C4 119.3 (5) H14A—C14—H14B 107.7
C2—C3—H3 120.4 O5—C15—O4 125.0 (5)
C4—C3—H3 120.4 O5—C15—C16 118.5 (5)
C5—C4—C3 117.3 (5) O4—C15—C16 116.5 (4)
C5—C4—C12 118.6 (5) C15—C16—I1 109.7 (4)
C3—C4—C12 124.1 (5) C15—C16—H16A 109.7
N1—C5—C4 122.6 (5) I1—C16—H16A 109.7
N1—C5—C6 116.8 (4) C15—C16—H16B 109.7
C4—C5—C6 120.6 (5) I1—C16—H16B 109.7
N2—C6—C7 123.4 (5) H16A—C16—H16B 108.2
N2—C6—C5 116.5 (4)

Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+2, −y+2, −z; (iii) −x+1, −y+2, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1B···O3 0.85 1.84 2.639 (6) 156
O1—H1C···O4iv 0.85 1.97 2.785 (5) 161
C3—H3···O1iii 0.93 2.44 3.240 (7) 144
C11—H11···O5ii 0.93 2.71 3.508 (8) 144
C10—H10···O3iv 0.93 2.68 3.431 (8) 138
C14—H14B···O2v 0.97 2.59 3.436 (8) 146
C14—H14A···O5v 0.97 2.64 3.219 (8) 119

Symmetry codes: (iv) −x+2, −y+1, −z; (iii) −x+1, −y+2, −z; (ii) −x+2, −y+2, −z; (v) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CV2511).

References

  1. Liu, J.-W., Zhu, B., Tian, Y. & Gu, C.-S. (2006). Acta Cryst. E62, m2030–m2032.
  2. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  4. Siemens (1996). SMART and SAINT Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809002682/cv2511sup1.cif

e-65-0m241-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002682/cv2511Isup2.hkl

e-65-0m241-Isup2.hkl (162.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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