Abstract
The title compound, C13H16N4O4, is a new hydrazone. An intramolecular N—H⋯O hydrogen bond generates a six-membered ring, producing an S(6) ring motif. The nitro groups in the ortho and para positions are almost coplanar with the benzene ring to which they are bound, making dihedral angles of 0.60 (11) and 3.18 (11)°, respectively. Pairs of intermolecular C—H⋯O hydrogen bonds link neighbouring molecules into inversion dimers with R 2 2(10) motifs. The crystal structure is further stabilized by intermolecular π–π interactions, with a benzene centroid-to-centroid distance of 3.6601 (4) Å.
Related literature
For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related literature on the applications of hydrazone, see, for example: Niknam et al., (2005 ▶); Guillaumont & Nakamura (2000 ▶); Raj & Kurup (2006 ▶); Okabe et al. (1993 ▶).
Experimental
Crystal data
C13H16N4O4
M r = 292.30
Monoclinic,
a = 6.9721 (1) Å
b = 23.7359 (5) Å
c = 8.2274 (2) Å
β = 102.351 (1)°
V = 1330.03 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.11 mm−1
T = 100.0 (1) K
0.51 × 0.45 × 0.08 mm
Data collection
Bruker SMART APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.946, T max = 0.991
26146 measured reflections
5824 independent reflections
4916 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.113
S = 1.04
5824 reflections
194 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.43 e Å−3
Δρmin = −0.30 e Å−3
Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809002657/kj2114sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002657/kj2114Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1N1⋯O2 | 0.888 (14) | 1.947 (14) | 2.6225 (9) | 131.7 (12) |
| C2—H2A⋯O3i | 0.95 | 2.52 | 3.3165 (10) | 142 |
Symmetry code: (i)
.
Acknowledgments
HKF and RK thank the Malaysian Government and Universiti Sains Malaysia for Science Fund grant No. 305/PFIZIK/613312. RK thanks Universiti Sains Malaysia for a postdoctoral research fellowship. HK thanks PNU for financial support. HKF also thanks Universiti Sains Malaysia for Research University Golden Goose grant No. 1001/PFIZIK/811012.
supplementary crystallographic information
Comment
2,4-Dinitrophenylhydrazones play an important role as stabilizers for the detection and protection of the carbonyl group (Niknam et al., 2005). 2,4-Dinitrophenylhydrazone derivatives are widely used in as dyes (Guillaumont & Nakamura, 2000). They are also found to have versatile coordinating abilities towards different metal ions (Raj & Kurup, 2006). In addition, some phenylhydrazone derivatives have been shown to be potentially DNA-damaging and mutagenic agents (Okabe et al., 1993).
The title compound (Fig. 1) is a new hydrazone. An intramolecular N—H···O hydrogen bond generates a six-membered ring, producing an S(6) ring motif (Bernstein et al., 1995). The nitro groups in the ortho and para positions are almost coplanar with the benzene ring to which they are bound, making dihedral angles of 0.60 (11)° and 3.18 (11)°, respectively. The cycloheptanone ring is puckered with a total puckering amplitude, Q = 0.7820 (8) Å. Pairs of intermolecular C—H···O hydrogen bonds link neighbouring molecules into dimers with R22(10) motifs (Table 1, Fig. 2). The crystal structure is further stabilized by intermolecular π–π interactions [Cg1···Cg1(1 - x, -y, 1 - z) = 3.6601 (4) Å, with Cg the centroid of the benzene ring].
Experimental
The title compound was synthesized based on the reported procedure (Okabe et al. 1993). Single crystals suitable for X-ray diffraction analysis were grown by slow evaporation of a saturated solution of the resulted compound in DMF.
Refinement
The H atom bound to N1 was located from the difference Fourier map and refined freely, see Table 1. The rest of the H atoms were positioned geometrically and refined in a riding model approximation with C—H = 0.95–0.99 Å and Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
View of the molecular structure of the title compound with atom labels and 50% probability ellipsoids for non-H atoms. Intramolecular hydrogen bond is shown as dash lines.
Fig. 2.
The crystal packing of the title compound, viewed down the c-axis showing dimer formation. Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
| C13H16N4O4 | F(000) = 616 |
| Mr = 292.30 | Dx = 1.460 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 9967 reflections |
| a = 6.9721 (1) Å | θ = 2.7–40.2° |
| b = 23.7359 (5) Å | µ = 0.11 mm−1 |
| c = 8.2274 (2) Å | T = 100 K |
| β = 102.351 (1)° | Plate, yellow |
| V = 1330.03 (5) Å3 | 0.51 × 0.45 × 0.08 mm |
| Z = 4 |
Data collection
| Bruker SMART APEXII CCD area-detector diffractometer | 5824 independent reflections |
| Radiation source: fine-focus sealed tube | 4916 reflections with I > 2σ(I) |
| graphite | Rint = 0.026 |
| φ and ω scans | θmax = 35.0°, θmin = 1.7° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −11→11 |
| Tmin = 0.946, Tmax = 0.991 | k = −38→38 |
| 26146 measured reflections | l = −12→13 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0637P)2 + 0.2167P] where P = (Fo2 + 2Fc2)/3 |
| 5824 reflections | (Δ/σ)max < 0.001 |
| 194 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
Special details
| Experimental. The low-temperature data was collected with the Oxford Cryosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.71910 (9) | −0.13041 (2) | 0.17783 (8) | 0.02285 (12) | |
| O2 | 0.81378 (8) | −0.04726 (2) | 0.11828 (8) | 0.02030 (12) | |
| O3 | 0.01157 (8) | −0.08982 (3) | 0.49098 (7) | 0.02059 (12) | |
| O4 | 0.17434 (9) | −0.16037 (2) | 0.41905 (8) | 0.02340 (13) | |
| N1 | 0.62623 (9) | 0.04321 (3) | 0.18111 (8) | 0.01434 (11) | |
| N2 | 0.58494 (9) | 0.10007 (2) | 0.19219 (8) | 0.01495 (11) | |
| N3 | 0.70085 (9) | −0.07900 (3) | 0.17430 (8) | 0.01533 (11) | |
| N4 | 0.14350 (9) | −0.10960 (3) | 0.42854 (8) | 0.01614 (12) | |
| C1 | 0.34898 (10) | 0.02454 (3) | 0.30373 (9) | 0.01400 (12) | |
| H1A | 0.3228 | 0.0638 | 0.3054 | 0.017* | |
| C2 | 0.23044 (10) | −0.01240 (3) | 0.36477 (9) | 0.01428 (12) | |
| H2A | 0.1231 | 0.0012 | 0.4077 | 0.017* | |
| C3 | 0.26847 (10) | −0.07040 (3) | 0.36355 (8) | 0.01365 (12) | |
| C4 | 0.42249 (10) | −0.09135 (3) | 0.30138 (8) | 0.01385 (12) | |
| H4A | 0.4470 | −0.1307 | 0.3017 | 0.017* | |
| C5 | 0.54189 (9) | −0.05386 (3) | 0.23798 (8) | 0.01284 (11) | |
| C6 | 0.51047 (9) | 0.00541 (3) | 0.23793 (8) | 0.01249 (11) | |
| C7 | 0.71332 (10) | 0.13537 (3) | 0.16026 (9) | 0.01369 (12) | |
| C8 | 0.90306 (10) | 0.11873 (3) | 0.11327 (9) | 0.01459 (12) | |
| H8A | 0.8734 | 0.1078 | −0.0056 | 0.018* | |
| H8B | 0.9549 | 0.0849 | 0.1784 | 0.018* | |
| C9 | 1.06529 (10) | 0.16349 (3) | 0.13962 (9) | 0.01612 (13) | |
| H9A | 1.0778 | 0.1796 | 0.2524 | 0.019* | |
| H9B | 1.1911 | 0.1447 | 0.1362 | 0.019* | |
| C10 | 1.03488 (12) | 0.21200 (3) | 0.01374 (11) | 0.02085 (15) | |
| H10A | 1.1629 | 0.2307 | 0.0187 | 0.025* | |
| H10B | 0.9920 | 0.1959 | −0.0993 | 0.025* | |
| C11 | 0.88606 (11) | 0.25661 (3) | 0.03869 (10) | 0.01808 (13) | |
| H11A | 0.9336 | 0.2747 | 0.1483 | 0.022* | |
| H11B | 0.8801 | 0.2860 | −0.0475 | 0.022* | |
| C12 | 0.67896 (11) | 0.23445 (3) | 0.03073 (10) | 0.01820 (14) | |
| H12A | 0.6359 | 0.2131 | −0.0741 | 0.022* | |
| H12B | 0.5890 | 0.2669 | 0.0276 | 0.022* | |
| C13 | 0.66109 (11) | 0.19625 (3) | 0.17764 (10) | 0.01816 (13) | |
| H13A | 0.7471 | 0.2115 | 0.2797 | 0.022* | |
| H13B | 0.5242 | 0.1982 | 0.1930 | 0.022* | |
| H1N1 | 0.727 (2) | 0.0296 (6) | 0.1432 (17) | 0.036 (3)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0256 (3) | 0.0139 (2) | 0.0313 (3) | 0.0047 (2) | 0.0112 (2) | −0.0015 (2) |
| O2 | 0.0173 (2) | 0.0201 (2) | 0.0264 (3) | −0.00068 (19) | 0.0112 (2) | −0.0007 (2) |
| O3 | 0.0189 (2) | 0.0239 (3) | 0.0216 (3) | −0.0013 (2) | 0.0100 (2) | 0.0012 (2) |
| O4 | 0.0262 (3) | 0.0139 (2) | 0.0317 (3) | −0.0030 (2) | 0.0096 (2) | 0.0025 (2) |
| N1 | 0.0135 (2) | 0.0119 (2) | 0.0186 (3) | −0.00005 (18) | 0.00577 (19) | 0.00008 (19) |
| N2 | 0.0142 (2) | 0.0117 (2) | 0.0198 (3) | 0.00064 (18) | 0.0055 (2) | 0.0012 (2) |
| N3 | 0.0145 (2) | 0.0153 (3) | 0.0166 (3) | 0.00157 (19) | 0.00412 (19) | −0.0017 (2) |
| N4 | 0.0161 (3) | 0.0163 (3) | 0.0162 (3) | −0.0022 (2) | 0.0037 (2) | 0.0015 (2) |
| C1 | 0.0132 (3) | 0.0127 (3) | 0.0166 (3) | 0.0010 (2) | 0.0045 (2) | 0.0005 (2) |
| C2 | 0.0133 (3) | 0.0144 (3) | 0.0158 (3) | 0.0007 (2) | 0.0045 (2) | 0.0008 (2) |
| C3 | 0.0139 (3) | 0.0132 (3) | 0.0141 (3) | −0.0011 (2) | 0.0036 (2) | 0.0009 (2) |
| C4 | 0.0145 (3) | 0.0128 (3) | 0.0140 (3) | −0.0004 (2) | 0.0025 (2) | −0.0003 (2) |
| C5 | 0.0122 (3) | 0.0128 (3) | 0.0138 (3) | 0.0008 (2) | 0.0036 (2) | −0.0014 (2) |
| C6 | 0.0119 (3) | 0.0127 (3) | 0.0127 (3) | −0.00011 (19) | 0.00235 (19) | 0.0000 (2) |
| C7 | 0.0131 (3) | 0.0125 (3) | 0.0160 (3) | 0.0006 (2) | 0.0043 (2) | 0.0009 (2) |
| C8 | 0.0133 (3) | 0.0130 (3) | 0.0184 (3) | 0.0002 (2) | 0.0054 (2) | −0.0004 (2) |
| C9 | 0.0125 (3) | 0.0149 (3) | 0.0210 (3) | −0.0004 (2) | 0.0037 (2) | 0.0026 (2) |
| C10 | 0.0200 (3) | 0.0173 (3) | 0.0284 (4) | 0.0029 (2) | 0.0121 (3) | 0.0069 (3) |
| C11 | 0.0199 (3) | 0.0137 (3) | 0.0218 (3) | 0.0009 (2) | 0.0071 (2) | 0.0032 (2) |
| C12 | 0.0170 (3) | 0.0142 (3) | 0.0233 (3) | 0.0029 (2) | 0.0040 (2) | 0.0029 (2) |
| C13 | 0.0191 (3) | 0.0128 (3) | 0.0256 (3) | 0.0016 (2) | 0.0115 (3) | 0.0003 (2) |
Geometric parameters (Å, °)
| O1—N3 | 1.2265 (8) | C7—C13 | 1.5044 (10) |
| O2—N3 | 1.2471 (8) | C7—C8 | 1.5080 (10) |
| O3—N4 | 1.2380 (9) | C8—C9 | 1.5330 (10) |
| O4—N4 | 1.2296 (8) | C8—H8A | 0.9900 |
| N1—C6 | 1.3551 (9) | C8—H8B | 0.9900 |
| N1—N2 | 1.3871 (8) | C9—C10 | 1.5328 (10) |
| N1—H1N1 | 0.887 (14) | C9—H9A | 0.9900 |
| N2—C7 | 1.2934 (9) | C9—H9B | 0.9900 |
| N3—C5 | 1.4517 (9) | C10—C11 | 1.5269 (11) |
| N4—C3 | 1.4525 (9) | C10—H10A | 0.9900 |
| C1—C2 | 1.3717 (10) | C10—H10B | 0.9900 |
| C1—C6 | 1.4241 (10) | C11—C12 | 1.5249 (11) |
| C1—H1A | 0.9500 | C11—H11A | 0.9900 |
| C2—C3 | 1.4026 (10) | C11—H11B | 0.9900 |
| C2—H2A | 0.9500 | C12—C13 | 1.5373 (11) |
| C3—C4 | 1.3772 (10) | C12—H12A | 0.9900 |
| C4—C5 | 1.3938 (10) | C12—H12B | 0.9900 |
| C4—H4A | 0.9500 | C13—H13A | 0.9900 |
| C5—C6 | 1.4237 (9) | C13—H13B | 0.9900 |
| C6—N1—N2 | 118.31 (6) | C7—C8—H8B | 108.2 |
| C6—N1—H1N1 | 117.1 (9) | C9—C8—H8B | 108.2 |
| N2—N1—H1N1 | 124.6 (9) | H8A—C8—H8B | 107.4 |
| C7—N2—N1 | 117.04 (6) | C10—C9—C8 | 115.71 (6) |
| O1—N3—O2 | 122.64 (6) | C10—C9—H9A | 108.4 |
| O1—N3—C5 | 118.93 (6) | C8—C9—H9A | 108.4 |
| O2—N3—C5 | 118.43 (6) | C10—C9—H9B | 108.4 |
| O4—N4—O3 | 123.61 (7) | C8—C9—H9B | 108.4 |
| O4—N4—C3 | 118.53 (6) | H9A—C9—H9B | 107.4 |
| O3—N4—C3 | 117.86 (6) | C11—C10—C9 | 115.46 (6) |
| C2—C1—C6 | 121.51 (6) | C11—C10—H10A | 108.4 |
| C2—C1—H1A | 119.2 | C9—C10—H10A | 108.4 |
| C6—C1—H1A | 119.2 | C11—C10—H10B | 108.4 |
| C1—C2—C3 | 119.69 (6) | C9—C10—H10B | 108.4 |
| C1—C2—H2A | 120.2 | H10A—C10—H10B | 107.5 |
| C3—C2—H2A | 120.2 | C12—C11—C10 | 114.80 (6) |
| C4—C3—C2 | 121.37 (6) | C12—C11—H11A | 108.6 |
| C4—C3—N4 | 118.83 (6) | C10—C11—H11A | 108.6 |
| C2—C3—N4 | 119.79 (6) | C12—C11—H11B | 108.6 |
| C3—C4—C5 | 118.95 (6) | C10—C11—H11B | 108.6 |
| C3—C4—H4A | 120.5 | H11A—C11—H11B | 107.5 |
| C5—C4—H4A | 120.5 | C11—C12—C13 | 113.89 (6) |
| C4—C5—C6 | 121.79 (6) | C11—C12—H12A | 108.8 |
| C4—C5—N3 | 115.84 (6) | C13—C12—H12A | 108.8 |
| C6—C5—N3 | 122.37 (6) | C11—C12—H12B | 108.8 |
| N1—C6—C5 | 123.46 (6) | C13—C12—H12B | 108.8 |
| N1—C6—C1 | 119.84 (6) | H12A—C12—H12B | 107.7 |
| C5—C6—C1 | 116.69 (6) | C7—C13—C12 | 115.46 (6) |
| N2—C7—C13 | 114.26 (6) | C7—C13—H13A | 108.4 |
| N2—C7—C8 | 124.44 (6) | C12—C13—H13A | 108.4 |
| C13—C7—C8 | 121.29 (6) | C7—C13—H13B | 108.4 |
| C7—C8—C9 | 116.32 (6) | C12—C13—H13B | 108.4 |
| C7—C8—H8A | 108.2 | H13A—C13—H13B | 107.5 |
| C9—C8—H8A | 108.2 | ||
| C6—N1—N2—C7 | 170.12 (6) | C4—C5—C6—N1 | 178.35 (6) |
| C6—C1—C2—C3 | 0.28 (10) | N3—C5—C6—N1 | −0.87 (10) |
| C1—C2—C3—C4 | −0.32 (10) | C4—C5—C6—C1 | −0.89 (9) |
| C1—C2—C3—N4 | 179.83 (6) | N3—C5—C6—C1 | 179.89 (6) |
| O4—N4—C3—C4 | −3.17 (10) | C2—C1—C6—N1 | −178.97 (6) |
| O3—N4—C3—C4 | 176.68 (6) | C2—C1—C6—C5 | 0.30 (10) |
| O4—N4—C3—C2 | 176.69 (7) | N1—N2—C7—C13 | −178.94 (6) |
| O3—N4—C3—C2 | −3.46 (10) | N1—N2—C7—C8 | −0.34 (10) |
| C2—C3—C4—C5 | −0.26 (10) | N2—C7—C8—C9 | −159.23 (7) |
| N4—C3—C4—C5 | 179.60 (6) | C13—C7—C8—C9 | 19.27 (10) |
| C3—C4—C5—C6 | 0.88 (10) | C7—C8—C9—C10 | −74.34 (8) |
| C3—C4—C5—N3 | −179.85 (6) | C8—C9—C10—C11 | 76.57 (9) |
| O1—N3—C5—C4 | 0.89 (9) | C9—C10—C11—C12 | −59.37 (9) |
| O2—N3—C5—C4 | −179.00 (6) | C10—C11—C12—C13 | 68.70 (9) |
| O1—N3—C5—C6 | −179.84 (6) | N2—C7—C13—C12 | −131.11 (7) |
| O2—N3—C5—C6 | 0.26 (10) | C8—C7—C13—C12 | 50.25 (9) |
| N2—N1—C6—C5 | −177.98 (6) | C11—C12—C13—C7 | −84.10 (8) |
| N2—N1—C6—C1 | 1.24 (10) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N1···O2 | 0.888 (14) | 1.947 (14) | 2.6225 (9) | 131.7 (12) |
| C2—H2A···O3i | 0.95 | 2.52 | 3.3165 (10) | 142 |
Symmetry codes: (i) −x, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KJ2114).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl.34, 1555–1573.
- Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Guillaumont, D. & Nakamura, S. (2000). Dyes Pigm.46, 85–92.
- Niknam, K., Kiasat, A. R. & Karimi, S. (2005). Synth. Commun.35, 2231–2236.
- Okabe, N., Nakamura, T. & Fukuda, H. (1993). Acta Cryst. C49, 1678–1680.
- Raj, B. N. B. & Kurup, M. R. P. (2006). Spectrochim. Acta Part A, 66, 898–903. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2003). J. Appl. Cryst.36, 7–13.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809002657/kj2114sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002657/kj2114Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


